Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Reverse (-)

24480612 .. 24482488

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACGTACGAGCCGAATCGGACGAACATGCTCGACGAATCCGACACCATTTTAAAGCCTCTTACGACGAGTCGTCGTCGACTTTTGACGCTTTACGACCAATGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGCGCCCATTCCCTCCAGCGTTGCCAGACCGGCGTGCGTCAAGGTCGGAGAAACCACCTCGAGGATCGTGCTCTGTGCGCTCTCGACCTTCGCATTCCGTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATGGGCATAATGTGGTAGCTGTTGTCGTTCCATTGATATCTACTAGTGTTGTTGTAATGGATCTTGTGGATGGTCAAGACATGCTGGAATGTTGCATATATGATCGAGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

6.19

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	79
AccII	CGCG	2 cut(s)	116, 153
AciI	CCGC	3 cut(s)	105, 114, 116
AclWI	GGATC	2 cut(s)	222, 456
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	211, 254
AgsI	TTSAA	1 cut(s)	342
AhdI	GACNNNNNGTC	1 cut(s)	72
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	346, 407
AluI	AGCT	2 cut(s)	346, 407
Alw21I	GWGCWC	2 cut(s)	112, 223
AlwI	GGATC	2 cut(s)	222, 456
Ama87I	CYCGRG	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	153, 155, 230
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	112, 223
BccI	CCATC	3 cut(s)	299, 383, 452
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	255
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 254
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	211, 254
BsePI	GCGCGC	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	116, 153
BsiHKAI	GWGCWC	2 cut(s)	112, 223
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	180
BsiWI	CGTACG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	211, 254
BsmI	GAATGC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	112, 223
Bsp143I	GATC	3 cut(s)	214, 448, 490
BspACI	CCGC	3 cut(s)	105, 114, 116
BspFNI	CGCG	2 cut(s)	116, 153
BspPI	GGATC	2 cut(s)	222, 456
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	114
BssHII	GCGCGC	1 cut(s)	151
BssMI	GATC	3 cut(s)	214, 448, 490
Bst2UI	CCWGG	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	153, 185
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	2 cut(s)	116, 153
BstHHI	GCGC	3 cut(s)	153, 155, 230
BstKTI	GATC	3 cut(s)	217, 451, 493
BstMBI	GATC	3 cut(s)	214, 448, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 180, 227
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	31, 472
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	2 cut(s)	116, 153
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	153, 185
CfoI	GCGC	3 cut(s)	153, 155, 230
Cfr10I	RCCGGY	1 cut(s)	179
Cfr42I	CCGCGG	1 cut(s)	117
CseI	GACGC	2 cut(s)	97, 176
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	28, 469
CviJI	RGCY	6 cut(s)	13, 58, 296, 338, 346, 407
CviKI_1	RGCY	6 cut(s)	13, 58, 296, 338, 346, 407
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	3 cut(s)	216, 450, 492
DpnII	GATC	3 cut(s)	214, 448, 490
DraI	TTTAAA	1 cut(s)	54
DriI	GACNNNNNGTC	1 cut(s)	72
Eam1105I	GACNNNNNGTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	426
FaeI	CATG	2 cut(s)	31, 472
FaiI	YATR	9 cut(s)	29, 312, 335, 372, 396, 470, 485, 487, 489
FatI	CATG	2 cut(s)	27, 468
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	79
FokI	GGATG	1 cut(s)	470
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	3 cut(s)	152, 154, 229
GsuI	CTGGAG	1 cut(s)	149
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	2 cut(s)	97, 176
HhaI	GCGC	3 cut(s)	153, 155, 230
Hin1II	CATG	2 cut(s)	31, 472
Hin6I	GCGC	3 cut(s)	151, 153, 228
HinP1I	GCGC	3 cut(s)	151, 153, 228
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	16, 38, 70
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	21, 43, 198
Hpy188III	TCNNGA	4 cut(s)	233, 386, 464, 494
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	4 cut(s)	38, 70, 78, 81
HpyAV	CCTTC	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	370, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 180, 227
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	31, 472
HspAI	GCGC	3 cut(s)	151, 153, 228
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	214, 448, 490
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	130, 179, 188, 193, 240, 267, 458
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	5
MalI	GATC	3 cut(s)	216, 450, 492
MboI	GATC	3 cut(s)	214, 448, 490
MboII	GAAGA	1 cut(s)	374
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	112, 223
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	66, 176
MnlI	CCTC	6 cut(s)	69, 150, 173, 205, 218, 268
MseI	TTAA	3 cut(s)	53, 270, 279
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	116, 153
MwoI	GCNNNNNNNGC	3 cut(s)	150, 180, 227
NdeII	GATC	3 cut(s)	214, 448, 490
NlaIII	CATG	2 cut(s)	31, 472
NspI	RCATGY	2 cut(s)	31, 472
PaeR7I	CTCGAG	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 39
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	16, 38
Pfl23II	CGTACG	1 cut(s)	6
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspLI	CGTACG	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	448
PteI	GCGCGC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	315
SacII	CCGCGG	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	53, 270, 279
Sau3AI	GATC	3 cut(s)	214, 448, 490
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	112, 223
SetI	ASST	8 cut(s)	8, 196, 210, 240, 279, 348, 377, 409
Sfr274I	CTCGAG	1 cut(s)	209
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	3 cut(s)	105, 114, 116
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	253
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	33, 79, 210, 234, 493
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	16, 38
Tru1I	TTAA	3 cut(s)	53, 270, 279
Tru9I	TTAA	3 cut(s)	53, 270, 279
TspGWI	ACGGA	1 cut(s)	237
XceI	RCATGY	2 cut(s)	31, 472
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.