Rorug06G0209100

Serine/threonine phosphatases, family 2C, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
33324580 .. 33325791
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0209100.1

Sequence Viewer

Length: 1212 bp
ATGGCATCATTGTTCACAGTGCACTGTAGAAACCCAAGACTTGTTGCCCGCAACTTTTCGCTGTGGTCAATGAAGAAGGACCCATCTCTTGAATCGGCATTGTCTAGGAACCGCCGGTGGGTGGTGAACAATCAACTTAAGAACATCATCCTTAGGTGCCCTCATCAGGTAGCAAAAGTGAGCTTCATTCAGACCAAGTTCAAGACTCTTGATCTCCAAGGAAAGGCTCTCAATTGGCTCAAGAAATACCCCTGCTGCTTTCAAGTCCATCTGCAGGGCGACGAGTACTACTGCCGGCTCACGAAACCGATGATGGCTTTGGTCGAAGAGGAAGAATGTGTCAAAGATATGCAGGAGCCTGTGTTTGTGGAGAGGTTGGCAAAGTTACTGATGATGAGCCGCAGTCAAAGACTGAATGTTGTCAAGCTTAATGAACTCAAGCGGAATTTTGGTTTTCCGGATGACTATCTGCTTAGACTTGTGCCAAAGTATCCTGACATGTTTCGAATTGTTAATTATAGCGGCCGAAGGAGTTCAATGGAGATTGAGCTGGTGGCTTGGAATCCGGATTTAGCGGTTTCTGCCATTGAAGATTCAGCTCAGAAGCAGGGAAGTGAGCCATGTTTCAGTTGCTCATTGCCTTCAACTTGGGTCAAGTCATGGGAAAGATTTCATGAGTTCAATGCGACTCCCTATATTTCTCCATACTTGGACACCAAAGGTTTATTGGAGGGATCAAAGGAGATGGAGAAGAGGACAGTCAGCTTGGTGCATGAGTTGTTGTCATTGACTCTATGGAAGAAAGCATCAATTGTAAAGCTCGGACATTTTCGGAGGGAATTTGTTTTGCCAGAGAGATTGAATGCTTTGCTGCTGAAGCACCCTGGTATATTTTATGTATCAAATAAGTATCAGATATATACTGTCCTTCTTAGAGAAGGCTATAATGGGCAAGAACTGGTTCATAAGGATCCACTTGTTGTCATAAAGGAGAAGTTTGGGGAACTTATGCAGGATGGGCTTCATGAATATAATCGCAGGCGCCATTTAGTAAATCTAGAAAAAAGGAGAAACAAAGGCATGGTTTTGGGTAGATCAGATGAAGGCAAGGATTTGTCTGACCTTGATGAGCAGGGAGACAGGGGAGGTTTGTTTGACCCAGAAGAAAGAAAAAGATTTTATAAAGTTCTCTTTGACGATGGTGCCCCATGA

Protein Analysis

403

Amino Acids

47.14

Weight (kDa)

9.24

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 25 - 340 7.2e-108 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1182
AccB1I GGYRCC 3 cut(s) 156, 1041, 1202
AccIII TCCGGA 2 cut(s) 457, 565
AciI CCGC 6 cut(s) 49, 112, 400, 442, 522, 575
AclWI GGATC 3 cut(s) 742, 965, 978
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 2 cut(s) 445, 839
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 1042
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 5 cut(s) 118, 121, 166, 223, 274
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 8 cut(s) 92, 202, 263, 537, 590, 645, 682, 862
AjnI CCWGG 1 cut(s) 883
AluBI AGCT 6 cut(s) 183, 427, 550, 599, 765, 820
AluI AGCT 6 cut(s) 183, 427, 550, 599, 765, 820
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 1131
Alw44I GTGCAC 1 cut(s) 20
AlwI GGATC 3 cut(s) 742, 965, 978
Aor13HI TCCGGA 2 cut(s) 457, 565
AoxI GGCC 1 cut(s) 523
ApaLI GTGCAC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 255, 871
ApoI RAATTY 2 cut(s) 445, 839
Asp700I GAANNNNTTC 3 cut(s) 532, 669, 960
AspLEI GCGC 1 cut(s) 1044
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 152
BaeGI GKGCMC 3 cut(s) 24, 161, 1207
BamHI GGATCC 1 cut(s) 970
BanI GGYRCC 3 cut(s) 156, 1041, 1202
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 242, 858
BccI CCATC 6 cut(s) 91, 276, 307, 739, 1010, 1193
BciT130I CCWGG 1 cut(s) 885
BciVI GTATCC 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 1131
BfaI CTAG 2 cut(s) 105, 1058
BfmI CTRYAG 2 cut(s) 25, 272
BfoI RGCGCY 1 cut(s) 1045
BfrI CTTAAG 1 cut(s) 137
BfuI GTATCC 1 cut(s) 501
BisI GCNGC 4 cut(s) 256, 400, 523, 872
BlsI GCNGC 4 cut(s) 257, 401, 524, 873
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 885
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 7 cut(s) 81, 110, 158, 357, 972, 1043, 1204
BmrFI CCNGG 1 cut(s) 885
BmsI GCATC 2 cut(s) 14, 815
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 2 cut(s) 224, 422
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 1042
BsaJI CCNNGG 2 cut(s) 217, 883
BsaWI WCCGGW 2 cut(s) 457, 565
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 121, 166, 223, 274
Bse118I RCCGGY 2 cut(s) 114, 294
Bse1I ACTGG 1 cut(s) 963
Bse21I CCTNAGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 635
Bse8I GATNNNNATC 1 cut(s) 465
BseAI TCCGGA 2 cut(s) 457, 565
BseBI CCWGG 1 cut(s) 885
BseDI CCNNGG 2 cut(s) 217, 883
BseGI GGATG 3 cut(s) 147, 466, 1021
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 5 cut(s) 118, 121, 166, 223, 274
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 963
BseSI GKGCMC 3 cut(s) 24, 161, 1207
BseX3I CGGCCG 1 cut(s) 523
BseXI GCAGC 2 cut(s) 242, 858
Bsh1285I CGRYCG 1 cut(s) 526
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 3 cut(s) 156, 1041, 1202
BsiEI CGRYCG 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 4 cut(s) 115, 295, 458, 566
BslI CCNNNNNNNGG 5 cut(s) 118, 121, 166, 223, 274
BsmAI GTCTC 1 cut(s) 1131
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 1 cut(s) 525
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 24, 161, 1207
Bsp13I TCCGGA 2 cut(s) 457, 565
Bsp143I GATC 4 cut(s) 211, 734, 970, 1094
BspACI CCGC 6 cut(s) 49, 112, 400, 442, 522, 575
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 1 cut(s) 613
BspEI TCCGGA 2 cut(s) 457, 565
BspHI TCATGA 2 cut(s) 673, 1024
BspLI GGNNCC 7 cut(s) 81, 110, 158, 357, 972, 1043, 1204
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 3 cut(s) 742, 965, 978
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 3 cut(s) 156, 1041, 1202
BspTI CTTAAG 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 635
BsrFI RCCGGY 2 cut(s) 114, 294
BsrI ACTGG 1 cut(s) 963
BssAI RCCGGY 2 cut(s) 114, 294
BssECI CCNNGG 2 cut(s) 217, 883
BssMI GATC 4 cut(s) 211, 734, 970, 1094
BssNI GRCGYC 1 cut(s) 1042
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 885
Bst4CI ACNGT 4 cut(s) 19, 26, 760, 925
Bst6I CTCTTC 2 cut(s) 321, 746
BstACI GRCGYC 1 cut(s) 1042
BstAFI CTTAAG 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 3 cut(s) 49, 296, 1040
BstDEI CTNAG 4 cut(s) 152, 473, 600, 932
BstF5I GGATG 3 cut(s) 147, 466, 1021
BstH2I RGCGCY 1 cut(s) 1045
BstHHI GCGC 1 cut(s) 1044
BstKTI GATC 4 cut(s) 214, 737, 973, 1097
BstMAI GTCTC 1 cut(s) 1131
BstMBI GATC 4 cut(s) 211, 734, 970, 1094
BstMCI CGRYCG 1 cut(s) 526
BstMWI GCNNNNNNNGC 3 cut(s) 581, 877, 1018
BstNI CCWGG 1 cut(s) 885
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 883
BstSFI CTRYAG 2 cut(s) 25, 272
BstSLI GKGCMC 3 cut(s) 24, 161, 1207
BstV1I GCAGC 2 cut(s) 242, 858
BstX2I RGATCY 1 cut(s) 970
BstYI RGATCY 1 cut(s) 970
BstZI CGGCCG 1 cut(s) 523
Bsu36I CCTNAGG 1 cut(s) 152
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 1 cut(s) 525
BtsCI GGATG 3 cut(s) 147, 466, 1021
BtsIMutI CAGTG 2 cut(s) 22, 24
Cac8I GCNNGC 3 cut(s) 49, 296, 1040
CciI TCATGA 2 cut(s) 673, 1024
CfoI GCGC 1 cut(s) 1044
Cfr10I RCCGGY 2 cut(s) 114, 294
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 286
CviAII CATG 8 cut(s) 499, 621, 660, 674, 773, 1025, 1081, 1209
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 4 cut(s) 152, 473, 600, 932
DinI GGCGCC 1 cut(s) 1043
DpnI GATC 4 cut(s) 213, 736, 972, 1096
DpnII GATC 4 cut(s) 211, 734, 970, 1094
EaeI YGGCCR 1 cut(s) 523
EagI CGGCCG 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 321, 746
EarI CTCTTC 2 cut(s) 321, 746
EclXI CGGCCG 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 79
Eco52I CGGCCG 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 896
Eco81I CCTNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 883
EcoT14I CCWWGG 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 1043
EheI GGCGCC 1 cut(s) 1043
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 8 cut(s) 502, 624, 663, 677, 776, 1028, 1084, 1212
FatI CATG 8 cut(s) 498, 620, 659, 673, 772, 1024, 1080, 1208
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 4 cut(s) 256, 400, 523, 872
FokI GGATG 3 cut(s) 134, 473, 1028
Fsp4HI GCNGC 4 cut(s) 256, 400, 523, 872
FspBI CTAG 2 cut(s) 105, 1058
GlaI GCGC 1 cut(s) 1043
GluI GCNGC 4 cut(s) 256, 400, 523, 872
HaeII RGCGCY 1 cut(s) 1045
HaeIII GGCC 1 cut(s) 525
HapII CCGG 4 cut(s) 115, 295, 458, 566
HhaI GCGC 1 cut(s) 1044
Hin1I GRCGYC 1 cut(s) 1042
Hin1II CATG 8 cut(s) 502, 624, 663, 677, 776, 1028, 1084, 1212
Hin6I GCGC 1 cut(s) 1042
HinP1I GCGC 1 cut(s) 1042
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 6 cut(s) 92, 205, 562, 593, 688, 790
HpaII CCGG 4 cut(s) 115, 295, 458, 566
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 15, 22, 127
Hpy188I TCNGA 7 cut(s) 192, 603, 824, 834, 915, 1099, 1120
Hpy8I GTNNAC 3 cut(s) 15, 22, 127
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 6 cut(s) 70, 522, 651, 932, 938, 1097
HpyCH4III ACNGT 4 cut(s) 19, 26, 760, 925
HpyCH4V TGCA 5 cut(s) 22, 274, 352, 772, 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 581, 877, 1018
HpyF3I CTNAG 4 cut(s) 152, 473, 600, 932
Hsp92I GRCGYC 1 cut(s) 1042
Hsp92II CATG 8 cut(s) 502, 624, 663, 677, 776, 1028, 1084, 1212
HspAI GCGC 1 cut(s) 1042
KasI GGCGCC 1 cut(s) 1041
Kpn2I TCCGGA 2 cut(s) 457, 565
KroI GCCGGC 1 cut(s) 294
KroNI GCCGGC 1 cut(s) 296
Kzo9I GATC 4 cut(s) 211, 734, 970, 1094
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 242, 858
LweI GCATC 2 cut(s) 14, 815
MaeI CTAG 2 cut(s) 105, 1058
MaeIII GTNAC 1 cut(s) 384
MalI GATC 4 cut(s) 213, 736, 972, 1096
MboI GATC 4 cut(s) 211, 734, 970, 1094
MboII GAAGA 7 cut(s) 85, 338, 344, 602, 763, 811, 1175
MfeI CAATTG 2 cut(s) 232, 810
MflI RGATCY 1 cut(s) 970
MhlI GDGCHC 3 cut(s) 24, 161, 1207
MluCI AATT 6 cut(s) 232, 445, 507, 514, 810, 839
Mly113I GGCGCC 1 cut(s) 1042
MlyI GAGTC 3 cut(s) 199, 682, 784
MnlI CCTC 7 cut(s) 171, 322, 366, 724, 747, 828, 1139
MroI TCCGGA 2 cut(s) 457, 565
MroNI GCCGGC 1 cut(s) 294
MroXI GAANNNNTTC 3 cut(s) 532, 669, 960
MseI TTAA 3 cut(s) 138, 429, 513
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 4 cut(s) 115, 295, 458, 566
MspR9I CCNGG 1 cut(s) 885
MunI CAATTG 2 cut(s) 232, 810
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 885
MwoI GCNNNNNNNGC 3 cut(s) 581, 877, 1018
NaeI GCCGGC 1 cut(s) 296
NarI GGCGCC 1 cut(s) 1042
NdeII GATC 4 cut(s) 211, 734, 970, 1094
NgoMIV GCCGGC 1 cut(s) 294
NlaIII CATG 8 cut(s) 502, 624, 663, 677, 776, 1028, 1084, 1212
NlaIV GGNNCC 7 cut(s) 81, 110, 158, 357, 972, 1043, 1204
NspI RCATGY 1 cut(s) 502
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 2 cut(s) 673, 1024
PciI ACATGT 1 cut(s) 498
PctI GAATGC 1 cut(s) 868
PdiI GCCGGC 1 cut(s) 296
PdmI GAANNNNTTC 3 cut(s) 532, 669, 960
PfeI GAWTC 3 cut(s) 92, 562, 593
PkrI GCNGC 4 cut(s) 257, 401, 524, 873
PleI GAGTC 3 cut(s) 199, 682, 784
PluTI GGCGCC 1 cut(s) 1045
PpsI GAGTC 3 cut(s) 199, 682, 784
PpuMI RGGWCCY 1 cut(s) 79
PscI ACATGT 1 cut(s) 498
PsiI TTATAA 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 883
PspGI CCWGG 1 cut(s) 883
PspN4I GGNNCC 7 cut(s) 81, 110, 158, 357, 972, 1043, 1204
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 1 cut(s) 970
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 138, 429, 513
SatI GCNGC 4 cut(s) 256, 400, 523, 872
Sau3AI GATC 4 cut(s) 211, 734, 970, 1094
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 3 cut(s) 199, 682, 784
ScrFI CCNGG 1 cut(s) 885
SduI GDGCHC 3 cut(s) 24, 161, 1207
SfaNI GCATC 2 cut(s) 14, 815
SfcI CTRYAG 2 cut(s) 25, 272
SfoI GGCGCC 1 cut(s) 1043
SfuI TTCGAA 1 cut(s) 505
SgrAI CRCCGGYG 1 cut(s) 114
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 3 cut(s) 137, 239, 437
SmoI CTYRAG 3 cut(s) 137, 239, 437
Sse9I AATT 6 cut(s) 232, 445, 507, 514, 810, 839
SsiI CCGC 6 cut(s) 49, 112, 400, 442, 522, 575
SspDI GGCGCC 1 cut(s) 1041
SspMI CTAG 2 cut(s) 105, 1058
StyD4I CCNGG 1 cut(s) 883
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 4 cut(s) 19, 26, 760, 925
TaqI TCGA 2 cut(s) 324, 505
TasI AATT 6 cut(s) 232, 445, 507, 514, 810, 839
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 402, 525
TfiI GAWTC 3 cut(s) 92, 562, 593
Tru1I TTAA 3 cut(s) 138, 429, 513
Tru9I TTAA 3 cut(s) 138, 429, 513
TscAI CASTG 2 cut(s) 24, 29
TseI GCWGC 2 cut(s) 255, 871
TspDTI ATGAA 8 cut(s) 86, 175, 447, 662, 953, 1013, 1041, 1116
TspRI CASTG 2 cut(s) 24, 29
Vha464I CTTAAG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 2 cut(s) 445, 839
XbaI TCTAGA 1 cut(s) 1057
XceI RCATGY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmnI GAANNNNTTC 3 cut(s) 532, 669, 960
XspI CTAG 2 cut(s) 105, 1058
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.