Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

17833906 .. 17835400

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATAAATGAACTCCAAAAAACTAGCTTTGCACCGGTACGCAGCGGCTCTTCAGTAATTACTCCTCGCCCCGAAACTGTGACGGTGAAAGCTGAGCGCGAGCGCGCATACGCGGATAGAGTTGGAATAGTTGCTGTTTTTGATGGTCATAATGGTAGTGAAGCTAATGATATGGCTTCCAAGCTGTTACGTATTTCGCTTTGCATATGCATTTTCTTGTCGGTGCTTCGTATTCTGCTATGTTGGAGAATGCAGCCTCAAGAACAGATTGAGCATTCATTGCAACCCCACTTTGATGCATTTTTCCAGTCGGACATTTTGACAGAAGCTTTGTTGAGGGCAATTCATGATATTGATGCAAAATTTTCCAAAGAAGCATCTGCAAAAAATATTAGTTCGGGTTCTACAGCCACGATTGTACTACTAGCTGATGGTCAAATTTTAGTTGCCAATATTGGAGACTCGAAGCCTTTTTTGTGCTCGGAAAAATCTATGTATCCTGCTGAGTCTGAAGGTCAGAGGGGTTCTATCTCGTATCTTAGGCATAAATGTAATAATGGTCCTGATTCATGTCCAAGAAACTATGGAATGTTCGAATTGGCCAACCCTGAGGTAATGACTTTTTCTGCCAAGGAATTGACAAGAGACCATCATCCAGGCAGAGATGATGAAAATCATATTTCACAAGCAATTGGTCAAGTCTCAATTAAAAGGTTTGGCGTTCTCTCTGCACCAGAGTTGACAGATTGGCAACCCCTGACTGTAAATGATACCGACCTTGTAGCTGCATCTGCTGGAGTTTCCAGGAAACTGAGCGTGCAGGATGTTTGTGACTTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

281

Amino Acids

30.82

Weight (kDa)

5.63

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	99, 105, 113
AciI	CCGC	2 cut(s)	45, 113
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	2 cut(s)	362, 438
AcuI	CTGAAG	2 cut(s)	36, 531
AfaI	GTAC	2 cut(s)	39, 420
AgeI	ACCGGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	655, 803
AluBI	AGCT	7 cut(s)	27, 92, 164, 184, 329, 428, 785
AluI	AGCT	7 cut(s)	27, 92, 164, 184, 329, 428, 785
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	3 cut(s)	453, 639, 706
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	42, 253, 785
ApoI	RAATTY	2 cut(s)	362, 438
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AsiGI	ACCGGT	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	99, 105, 107
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	54, 265, 772
BccI	CCATC	3 cut(s)	137, 425, 657
BciT130I	CCWGG	2 cut(s)	657, 805
BciVI	GTATCC	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	453, 639, 706
BfaI	CTAG	2 cut(s)	24, 425
BfmI	CTRYAG	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	4 cut(s)	43, 46, 254, 786
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	44, 47, 255, 787
Bme1390I	CCNGG	2 cut(s)	657, 805
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmrFI	CCNGG	2 cut(s)	657, 805
BmsI	GCATC	4 cut(s)	286, 346, 386, 797
BpmI	CTGGAG	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	2 cut(s)	657, 805
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	2 cut(s)	652, 829
BseJI	GATNNNNATC	1 cut(s)	672
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	4 cut(s)	84, 495, 600, 803
BseNI	ACTGG	1 cut(s)	307
BsePI	GCGCGC	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	54, 265, 772
BsgI	GTGCAG	2 cut(s)	714, 839
Bsh1236I	CGCG	3 cut(s)	99, 105, 113
BshFI	GGCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	3 cut(s)	453, 639, 706
BsmI	GAATGC	2 cut(s)	255, 274
BsnI	GGCC	1 cut(s)	602
Bso31I	GGTCTC	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	2 cut(s)	45, 113
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	4 cut(s)	85, 496, 601, 804
BspFNI	CGCG	3 cut(s)	99, 105, 113
BspHI	TCATGA	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	630
BssHII	GCGCGC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	657, 805
Bst4CI	ACNGT	3 cut(s)	79, 85, 763
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	101, 105, 818
BstDEI	CTNAG	5 cut(s)	93, 504, 539, 609, 812
BstF5I	GGATG	2 cut(s)	652, 829
BstFNI	CGCG	3 cut(s)	99, 105, 113
BstHHI	GCGC	3 cut(s)	99, 105, 107
BstMAI	GTCTC	3 cut(s)	453, 639, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 791
BstNI	CCWGG	2 cut(s)	657, 805
BstSCI	CCNGG	2 cut(s)	655, 803
BstSFI	CTRYAG	1 cut(s)	405
BstSNI	TACGTA	1 cut(s)	191
BstUI	CGCG	3 cut(s)	99, 105, 113
BstV1I	GCAGC	3 cut(s)	54, 265, 772
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	652, 829
Cac8I	GCNNGC	3 cut(s)	101, 105, 818
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	3 cut(s)	99, 105, 107
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	38, 419
CspAI	ACCGGT	1 cut(s)	34
CviAII	CATG	2 cut(s)	347, 570
CviQI	GTAC	2 cut(s)	38, 419
DdeI	CTNAG	5 cut(s)	93, 504, 539, 609, 812
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco105I	TACGTA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	2 cut(s)	36, 531
Eco81I	CCTNAGG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	655, 803
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	2 cut(s)	212, 301
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	350, 573
FatI	CATG	2 cut(s)	346, 569
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	4 cut(s)	43, 46, 254, 786
FokI	GGATG	2 cut(s)	639, 836
Fsp4HI	GCNGC	4 cut(s)	43, 46, 254, 786
FspBI	CTAG	2 cut(s)	24, 425
GlaI	GCGC	3 cut(s)	98, 104, 106
GluI	GCNGC	4 cut(s)	43, 46, 254, 786
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	3 cut(s)	99, 105, 107
Hin1II	CATG	2 cut(s)	350, 573
Hin6I	GCGC	3 cut(s)	97, 103, 105
HinP1I	GCGC	3 cut(s)	97, 103, 105
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	3 cut(s)	461, 506, 566
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	741
Hpy188I	TCNGA	4 cut(s)	313, 484, 511, 519
Hpy188III	TCNNGA	3 cut(s)	260, 347, 563
Hpy8I	GTNNAC	1 cut(s)	741
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	3 cut(s)	79, 85, 763
HpyCH4IV	ACGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 791
HpyF3I	CTNAG	5 cut(s)	93, 504, 539, 609, 812
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	350, 573
HspAI	GCGC	3 cut(s)	97, 103, 105
LguI	GCTCTTC	1 cut(s)	55
Lsp1109I	GCAGC	3 cut(s)	54, 265, 772
LweI	GCATC	4 cut(s)	286, 346, 386, 797
MaeI	CTAG	2 cut(s)	24, 425
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	3 cut(s)	79, 186, 830
MboII	GAAGA	1 cut(s)	42
MfeI	CAATTG	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	482
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	8 cut(s)	57, 342, 362, 438, 596, 635, 690, 705
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	2 cut(s)	455, 515
MmeI	TCCRAC	3 cut(s)	103, 224, 291
MnlI	CCTC	5 cut(s)	75, 267, 330, 513, 604
Mox20I	TGGCCA	1 cut(s)	602
Mph1103I	ATGCAT	2 cut(s)	212, 301
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	2 cut(s)	708, 836
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	657, 805
MunI	CAATTG	1 cut(s)	690
Mva1269I	GAATGC	2 cut(s)	255, 274
MvaI	CCWGG	2 cut(s)	657, 805
MvnI	CGCG	3 cut(s)	99, 105, 113
MwoI	GCNNNNNNNGC	2 cut(s)	280, 791
NdeI	CATATG	1 cut(s)	206
NlaIII	CATG	2 cut(s)	350, 573
NmuCI	GTSAC	2 cut(s)	79, 830
NsiI	ATGCAT	2 cut(s)	212, 301
NspV	TTCGAA	1 cut(s)	594
PagI	TCATGA	1 cut(s)	346
PauI	GCGCGC	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	55
PctI	GAATGC	2 cut(s)	255, 274
PfeI	GAWTC	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	803
PinAI	ACCGGT	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	44, 47, 255, 787
PleI	GAGTC	2 cut(s)	455, 514
PpsI	GAGTC	2 cut(s)	455, 514
Ppu21I	YACGTR	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	655, 803
PspGI	CCWGG	2 cut(s)	655, 803
PspPI	GGNCC	1 cut(s)	560
PteI	GCGCGC	1 cut(s)	103
RsaI	GTAC	2 cut(s)	39, 420
RsaNI	GTAC	2 cut(s)	38, 419
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	708, 836
SatI	GCNGC	4 cut(s)	43, 46, 254, 786
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	455, 515
ScrFI	CCNGG	2 cut(s)	657, 805
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	4 cut(s)	286, 346, 386, 797
SfcI	CTRYAG	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	594
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SnaBI	TACGTA	1 cut(s)	191
Sse9I	AATT	8 cut(s)	57, 342, 362, 438, 596, 635, 690, 705
SsiI	CCGC	2 cut(s)	45, 113
SspI	AATATT	2 cut(s)	391, 454
SspMI	CTAG	2 cut(s)	24, 425
StyD4I	CCNGG	2 cut(s)	655, 803
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	3 cut(s)	79, 85, 763
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	464, 594
TasI	AATT	8 cut(s)	57, 342, 362, 438, 596, 635, 690, 705
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	708, 836
Tru9I	TTAA	2 cut(s)	708, 836
TseFI	GTSAC	2 cut(s)	79, 830
TseI	GCWGC	3 cut(s)	42, 253, 785
Tsp45I	GTSAC	2 cut(s)	79, 830
TspDTI	ATGAA	5 cut(s)	24, 267, 335, 558, 684
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	362, 438
XspI	CTAG	2 cut(s)	24, 425
Zsp2I	ATGCAT	2 cut(s)	212, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.