Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

25294908 .. 25298640

Gene Structure 3733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGAAGACAGCTCCTCCGGAGTTCGCCTAATCTGTTTTTGCTTAATACTAGCCCTAATTACGACGATGACGGCAGCCTCTTACGACGAGTCGTCGTCGACGTGTTTGACGCTTTACGAACAAGGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGGGCCGATTCCCTCCAGCGTTGCCAGACCGCCGTGCGTCGAGGTCGGAGAAACCACCTCGAGGATCGTGCTCTGTGCGCTCTCGACCTTCGCATTCCGTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATTCTTCTGATGCATCGAATAAATATTCAAGAACAGCAATATTGCAAACTGGTGGAGAACTTTATACTTCAAATGGCGTATTCCGATCGCATCAATTGGATATTTCAAGGTTTAATCCTTCTTTGAAAGCAAAGTTTGATGATTCGCGTCATTTTGATATTTTGAAAGAAGCATTGTTGAGAGCAGTTCATGATATTGATGCAAAATTTTCTATGGAAGCATCTTGGAAAAATCTTGTATCTGGTACTACAGCCTCGATTATATTACTTGCTGATGGTCATATTTTAGTTGCCAATATTGGAGACTCAAAGGCTTTTCTGTGCTCAGAAAAATTCCAATCTCCTGCAGAGGCTAAAGCCGCTTATTTGAGATACAGGCGGGAAAGGCGTAATGGTGCCATATCATCTCCCTTAGGAAACTATAAGAAAAACTTTGAATTGGCTTCCTCCTCCTCTGGGTTGGTGCAGCTTTCTGTTAAGGAATTGACGAGAGATCATCATCCAGACAGAGATGATGAAAAATTCCGCGTGGAAACTGCTGGTGGCTATGTGGAATTGGGTGGTGTGCCTCGAGTAAATGGTCAGCTGGCTATTTCCAGATCTATTGGCGATATTTCCTTCAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

346

Amino Acids

38.25

Weight (kDa)

8.39

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	171 - 247	8.8e-07	Protein phosphatase 2C
PP2C	PF00481	297 - 346	1.4e-13	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	101
AccII	CGCG	3 cut(s)	140, 559, 939
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	8 cut(s)	129, 138, 140, 175, 204, 771, 790, 937
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	3 cut(s)	617, 743, 932
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	4 cut(s)	235, 278, 867, 1035
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	8 cut(s)	366, 441, 483, 519, 538, 577, 848, 1033
AhdI	GACNNNNNGTC	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	4 cut(s)	15, 370, 880, 997
AluI	AGCT	4 cut(s)	15, 370, 880, 997
Alw21I	GWGCWC	3 cut(s)	136, 247, 737
Alw26I	GTCTC	1 cut(s)	708
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	2 cut(s)	233, 981
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	77, 877
ApoI	RAATTY	3 cut(s)	617, 743, 932
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	2 cut(s)	233, 981
AxyI	CCTNAGG	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	3 cut(s)	136, 247, 737
BbvI	GCAGC	2 cut(s)	89, 889
BccI	CCATC	2 cut(s)	323, 680
BceAI	ACGGC	2 cut(s)	90, 191
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	2 cut(s)	660, 756
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	3 cut(s)	78, 771, 878
BlsI	GCNGC	3 cut(s)	79, 772, 879
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	2 cut(s)	233, 981
BmgBI	CACGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	5 cut(s)	412, 434, 511, 601, 641
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	909
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 278, 867, 1035
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	823
Bse8I	GATNNNNATC	1 cut(s)	909
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	910
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	4 cut(s)	235, 278, 867, 1035
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	3 cut(s)	7, 850, 853
BseXI	GCAGC	2 cut(s)	89, 889
BsgI	GTGCAG	1 cut(s)	896
Bsh1236I	CGCG	3 cut(s)	140, 559, 939
Bsh1285I	CGRYCG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	806
BsiEI	CGRYCG	1 cut(s)	500
BsiHKAI	GWGCWC	3 cut(s)	136, 247, 737
BsiHKCI	CYCGRG	2 cut(s)	233, 981
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	4 cut(s)	235, 278, 867, 1035
BsmAI	GTCTC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	2 cut(s)	233, 981
Bsp1286I	GDGCHC	3 cut(s)	136, 247, 737
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	238, 497, 904, 1010
BspACI	CCGC	8 cut(s)	129, 138, 140, 175, 204, 771, 790, 937
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	749
BspEI	TCCGGA	1 cut(s)	20
BspFNI	CGCG	3 cut(s)	140, 559, 939
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	808
BspMAI	CTGCAG	1 cut(s)	760
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	806
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	238, 497, 904, 1010
Bst2UI	CCWGG	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	177, 999
BstDEI	CTNAG	2 cut(s)	736, 823
BstDSI	CCRYGG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	1033
BstF5I	GGATG	1 cut(s)	910
BstFNI	CGCG	3 cut(s)	140, 559, 939
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	241, 500, 907, 1013
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	4 cut(s)	238, 497, 904, 1010
BstMCI	CGRYCG	1 cut(s)	500
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 770, 796
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	2 cut(s)	660, 756
BstUI	CGCG	3 cut(s)	140, 559, 939
BstV1I	GCAGC	2 cut(s)	89, 889
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	1010
Bsu36I	CCTNAGG	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	910
Cac8I	GCNNGC	2 cut(s)	177, 999
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	177
Cfr42I	CCGCGG	1 cut(s)	141
CseI	GACGC	3 cut(s)	121, 200, 548
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	1 cut(s)	602
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	2 cut(s)	736, 823
DpnI	GATC	4 cut(s)	240, 499, 906, 1012
DpnII	GATC	4 cut(s)	238, 497, 904, 1010
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	823
Eco88I	CYCGRG	2 cut(s)	233, 981
EcoNI	CCTNNNNNAGG	1 cut(s)	1033
EcoRII	CCWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	1 cut(s)	605
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FatI	CATG	1 cut(s)	601
FauI	CCCGC	3 cut(s)	145, 168, 783
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	78, 771, 878
FokI	GGATG	1 cut(s)	897
Fsp4HI	GCNGC	3 cut(s)	78, 771, 878
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	78, 771, 878
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	3 cut(s)	121, 200, 548
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	605
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	5 cut(s)	92, 182, 413, 554, 716
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	4 cut(s)	222, 421, 497, 739
Hpy188III	TCNNGA	7 cut(s)	21, 257, 410, 441, 602, 914, 1008
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	6 cut(s)	70, 92, 100, 103, 106, 216
HpyAV	CCTTC	3 cut(s)	272, 540, 1039
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	6 cut(s)	394, 425, 457, 614, 758, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 770, 796
HpyF3I	CTNAG	2 cut(s)	736, 823
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	605
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	238, 497, 904, 1010
LmnI	GCTCC	2 cut(s)	20, 139
Lsp1109I	GCAGC	2 cut(s)	89, 889
LweI	GCATC	5 cut(s)	412, 434, 511, 601, 641
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	104
MalI	GATC	4 cut(s)	240, 499, 906, 1012
MboI	GATC	4 cut(s)	238, 497, 904, 1010
MboII	GAAGA	4 cut(s)	17, 20, 398, 408
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	1010
MhlI	GDGCHC	3 cut(s)	136, 247, 737
MluCI	AATT	9 cut(s)	60, 284, 506, 617, 743, 848, 893, 932, 965
MlyI	GAGTC	2 cut(s)	101, 710
MmeI	TCCRAC	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	20
MseI	TTAA	5 cut(s)	47, 294, 303, 525, 888
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	2 cut(s)	140, 997
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	3 cut(s)	140, 559, 939
MwoI	GCNNNNNNNGC	3 cut(s)	251, 770, 796
NdeII	GATC	4 cut(s)	238, 497, 904, 1010
NlaIII	CATG	1 cut(s)	605
NlaIV	GGNNCC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	427
PaeR7I	CTCGAG	2 cut(s)	233, 981
PagI	TCATGA	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	182, 413, 554
PkrI	GCNGC	3 cut(s)	79, 772, 879
Ple19I	CGATCG	1 cut(s)	500
PleI	GAGTC	2 cut(s)	100, 710
PpsI	GAGTC	2 cut(s)	100, 710
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	808
PspPI	GGNCC	1 cut(s)	177
PspXI	VCTCGAGB	2 cut(s)	233, 981
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	1 cut(s)	1010
PvuI	CGATCG	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	997
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	1 cut(s)	339
SacII	CCGCGG	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	100
SaqAI	TTAA	5 cut(s)	47, 294, 303, 525, 888
SatI	GCNGC	3 cut(s)	78, 771, 878
Sau3AI	GATC	4 cut(s)	238, 497, 904, 1010
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	101, 710
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	3 cut(s)	136, 247, 737
SfaNI	GCATC	5 cut(s)	412, 434, 511, 601, 641
SfcI	CTRYAG	2 cut(s)	660, 756
Sfr274I	CTCGAG	2 cut(s)	233, 981
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SgrDI	CGTCGACG	1 cut(s)	100
SlaI	CTCGAG	2 cut(s)	233, 981
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	233, 981
SmoI	CTYRAG	2 cut(s)	233, 981
Sse9I	AATT	9 cut(s)	60, 284, 506, 617, 743, 848, 893, 932, 965
SsiI	CCGC	8 cut(s)	129, 138, 140, 175, 204, 771, 790, 937
SspI	AATATT	3 cut(s)	437, 453, 709
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	7 cut(s)	101, 214, 234, 258, 428, 668, 982
TasI	AATT	9 cut(s)	60, 284, 506, 617, 743, 848, 893, 932, 965
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	3 cut(s)	182, 413, 554
Tru1I	TTAA	5 cut(s)	47, 294, 303, 525, 888
Tru9I	TTAA	5 cut(s)	47, 294, 303, 525, 888
TseI	GCWGC	2 cut(s)	77, 877
TspDTI	ATGAA	2 cut(s)	590, 942
TspGWI	ACGGA	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	1033
XapI	RAATTY	3 cut(s)	617, 743, 932
XhoI	CTCGAG	2 cut(s)	233, 981
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.