Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

23483275 .. 23487266

Gene Structure 3992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCCTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATTCACCTTATTATTCTGATGCATCGAATAAATATTCAAGAACAGAAATATTGCAAACTGGTGGAGAACTTTATACTTCAAATGGTGTATTCCGATCGTATCAATTGGATGTTGCAAGGTTTAATCCTTCTTTGAAAGCAAAGTTTGATGATTCGCGTCATTTTGATATTTTGAAAGAAGCATTGTTGAGAGCAGTTCATGATATTGATGCAAAATTTTCTATGGAAGCATCTTGGAAAAATCTTGTATCTGGTACTACAGCCTCGATTATATTACTTGCTGATGGCCATATTTTAGTTGCCAATATTGGAGACTCAAAGGCTTTTCTGTGCTCAGAAAAATTTCAATCTCCTGCAGAGGCTAAAGCCGCTTATTTGAGATACAGGCGGGAAAGGCGTAATGGTGCCATATCATCTCCCTTAGGAAACTATAAGAAAAACTTTGAATTGGCTTCCTCCTCCTCTGGGTTGGTGCAGCTTTCTGTTAAGGAATTGACGAGAGATCATCATCCAGACAGAGATGATGAAAAATTCCGCGTGGAAACTGCTGGTGGCTATGTGGAATTGGGTGGTGTGCCTCGAGTAAATGGTCAGCTGGCTATTTCCAGATCTATTGGCGATATTTCCTTCAAAAGTTTCGGCGTTATATCTACACCAGAGTTGACCGACTGGCAACCCCTGACTGTAAACGATACCTATCTCGTTGCTGCATCTGATGGAGTTTTTGAGAAGCAGAGTCTGCAGGATGTTTGTGATTTATTGTGGGAAGCTCGGAGTTATGATTCTAGGAGATCGGAGTTCTCTTCCTCGCCTTGTTCATACTCATTAGCCAACTGCATCGTGAATGCTGCACTCGACAAGGGCAGCATGGATAATGTGGCAGCTGTTGTCGTTCCAATGATATCTACTTGGTTTTTTGAAAGTTTTTTCATGGAAGGATCAGTTTCAGAGAGGGACAGAAACTGTGAAGCATTAGGACTACAAAGTTCCACTGATGAGTGCACAGGTGAGTCTAAATCAAACTATAGAACAACTCAACATCATTGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

368

Amino Acids

41.0

Weight (kDa)

5.47

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	68 - 131	1.9e-06	Protein phosphatase 2C
PP2C	PF00481	181 - 311	6.8e-24	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccII	CGCG	2 cut(s)	211, 591
AciI	CCGC	3 cut(s)	423, 442, 589
AclWI	GGATC	1 cut(s)	1000
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	3 cut(s)	269, 395, 584
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	8 cut(s)	93, 135, 190, 229, 401, 500, 685, 974
AluBI	AGCT	5 cut(s)	13, 532, 649, 824, 938
AluI	AGCT	5 cut(s)	13, 532, 649, 824, 938
Alw21I	GWGCWC	2 cut(s)	389, 1058
Alw26I	GTCTC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	1054
AlwI	GGATC	1 cut(s)	1000
AlwNI	CAGNNNCTG	2 cut(s)	793, 1017
Ama87I	CYCGRG	1 cut(s)	633
AoxI	GGCC	2 cut(s)	3, 340
ApaLI	GTGCAC	1 cut(s)	1054
ApeKI	GCWGC	5 cut(s)	529, 761, 902, 918, 935
ApoI	RAATTY	3 cut(s)	269, 395, 584
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	51, 1073
AvaI	CYCGRG	1 cut(s)	633
AxyI	CCTNAGG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	1058
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	389, 1058
BbvI	GCAGC	5 cut(s)	541, 748, 889, 930, 947
BccI	CCATC	2 cut(s)	332, 764
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	4 cut(s)	312, 408, 794, 1078
BglII	AGATCT	1 cut(s)	662
BisI	GCNGC	6 cut(s)	423, 530, 762, 903, 919, 936
BlsI	GCNGC	6 cut(s)	424, 531, 763, 904, 920, 937
BmeT110I	CYCGRG	1 cut(s)	633
BmiI	GGNNCC	1 cut(s)	460
BmsI	GCATC	6 cut(s)	64, 86, 253, 293, 773, 900
BsaBI	GATNNNNATC	2 cut(s)	561, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse1I	ACTGG	2 cut(s)	118, 728
Bse21I	CCTNAGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	1096
Bse8I	GATNNNNATC	2 cut(s)	561, 750
BseGI	GGATG	3 cut(s)	169, 562, 805
BseJI	GATNNNNATC	2 cut(s)	561, 750
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	1096
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	118, 728
BseRI	GAGGAG	2 cut(s)	502, 505
BseSI	GKGCMC	1 cut(s)	1058
BseXI	GCAGC	5 cut(s)	541, 748, 889, 930, 947
BsgI	GTGCAG	2 cut(s)	548, 888
Bsh1236I	CGCG	2 cut(s)	211, 591
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	5, 342
BshNI	GGYRCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	389, 1058
BsiHKCI	CYCGRG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	1022
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	1022
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	2 cut(s)	5, 342
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	389, 1058
Bsp143I	GATC	5 cut(s)	149, 556, 662, 845, 992
BspACI	CCGC	3 cut(s)	423, 442, 589
BspANI	GGCC	2 cut(s)	5, 342
BspCNI	CTCAG	1 cut(s)	401
BspFNI	CGCG	2 cut(s)	211, 591
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	2 cut(s)	412, 798
BspPI	GGATC	1 cut(s)	1000
BspT107I	GGYRCC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	1096
BsrI	ACTGG	2 cut(s)	118, 728
BssMI	GATC	5 cut(s)	149, 556, 662, 845, 992
Bst4CI	ACNGT	2 cut(s)	739, 1019
Bst6I	CTCTTC	1 cut(s)	862
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	388, 475
BstF5I	GGATG	3 cut(s)	169, 562, 805
BstFNI	CGCG	2 cut(s)	211, 591
BstKTI	GATC	5 cut(s)	152, 559, 665, 848, 995
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	5 cut(s)	149, 556, 662, 845, 992
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 448, 793
BstSFI	CTRYAG	4 cut(s)	312, 408, 794, 1078
BstSLI	GKGCMC	1 cut(s)	1058
BstUI	CGCG	2 cut(s)	211, 591
BstV1I	GCAGC	5 cut(s)	541, 748, 889, 930, 947
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
Bsu36I	CCTNAGG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	5, 342
BtsCI	GGATG	3 cut(s)	169, 562, 805
BtsIMutI	CAGTG	1 cut(s)	1044
Cac8I	GCNNGC	1 cut(s)	651
CaiI	CAGNNNCTG	2 cut(s)	793, 1017
CciI	TCATGA	1 cut(s)	253
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	254, 922, 985
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	388, 475
DpnI	GATC	5 cut(s)	151, 558, 664, 847, 994
DpnII	GATC	5 cut(s)	149, 556, 662, 845, 992
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco32I	GATATC	1 cut(s)	957
Eco81I	CCTNAGG	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	633
EcoRV	GATATC	1 cut(s)	957
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	3 cut(s)	257, 925, 988
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	3 cut(s)	253, 921, 984
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	6 cut(s)	423, 530, 762, 903, 919, 936
FokI	GGATG	3 cut(s)	176, 549, 812
Fsp4HI	GCNGC	6 cut(s)	423, 530, 762, 903, 919, 936
FspBI	CTAG	1 cut(s)	840
GluI	GCNGC	6 cut(s)	423, 530, 762, 903, 919, 936
HaeIII	GGCC	2 cut(s)	5, 342
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	257, 925, 988
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	6 cut(s)	56, 206, 368, 790, 836, 1064
HphI	GGTGA	2 cut(s)	51, 1073
Hpy166II	GTNNAC	3 cut(s)	717, 742, 1056
Hpy188I	TCNGA	7 cut(s)	73, 149, 391, 769, 828, 850, 1003
Hpy188III	TCNNGA	6 cut(s)	53, 93, 254, 566, 660, 895
Hpy8I	GTNNAC	3 cut(s)	717, 742, 1056
HpyAV	CCTTC	3 cut(s)	192, 691, 983
HpyCH4III	ACNGT	2 cut(s)	739, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 448, 793
HpyF3I	CTNAG	2 cut(s)	388, 475
Hsp92II	CATG	3 cut(s)	257, 925, 988
Kzo9I	GATC	5 cut(s)	149, 556, 662, 845, 992
Lsp1109I	GCAGC	5 cut(s)	541, 748, 889, 930, 947
LweI	GCATC	6 cut(s)	64, 86, 253, 293, 773, 900
MaeI	CTAG	1 cut(s)	840
MalI	GATC	5 cut(s)	151, 558, 664, 847, 994
MboI	GATC	5 cut(s)	149, 556, 662, 845, 992
MboII	GAAGA	2 cut(s)	41, 849
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	2 cut(s)	389, 1058
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	7 cut(s)	158, 269, 395, 500, 545, 584, 617
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	362, 799, 1073
MnlI	CCTC	9 cut(s)	16, 328, 406, 520, 523, 526, 642, 871, 999
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	2 cut(s)	177, 540
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	649, 938
MunI	CAATTG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	904
MvnI	CGCG	2 cut(s)	211, 591
MwoI	GCNNNNNNNGC	3 cut(s)	422, 448, 793
NdeII	GATC	5 cut(s)	149, 556, 662, 845, 992
NlaIII	CATG	3 cut(s)	257, 925, 988
NlaIV	GGNNCC	1 cut(s)	460
NsiI	ATGCAT	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	633
PagI	TCATGA	1 cut(s)	253
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	56, 206, 836
PkrI	GCNGC	6 cut(s)	424, 531, 763, 904, 920, 937
Ple19I	CGATCG	1 cut(s)	152
PleI	GAGTC	3 cut(s)	362, 798, 1072
PpsI	GAGTC	3 cut(s)	362, 798, 1072
PspN4I	GGNNCC	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	633
PstI	CTGCAG	2 cut(s)	412, 798
PstNI	CAGNNNCTG	2 cut(s)	793, 1017
PsuI	RGATCY	1 cut(s)	662
PvuI	CGATCG	1 cut(s)	152
PvuII	CAGCTG	2 cut(s)	649, 938
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	177, 540
SatI	GCNGC	6 cut(s)	423, 530, 762, 903, 919, 936
Sau3AI	GATC	5 cut(s)	149, 556, 662, 845, 992
SchI	GAGTC	3 cut(s)	362, 799, 1073
SduI	GDGCHC	2 cut(s)	389, 1058
SfaNI	GCATC	6 cut(s)	64, 86, 253, 293, 773, 900
SfcI	CTRYAG	4 cut(s)	312, 408, 794, 1078
Sfr274I	CTCGAG	1 cut(s)	633
SlaI	CTCGAG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	7 cut(s)	158, 269, 395, 500, 545, 584, 617
SsiI	CCGC	3 cut(s)	423, 442, 589
SspI	AATATT	3 cut(s)	89, 105, 361
SspMI	CTAG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	739, 1019
TaqI	TCGA	4 cut(s)	80, 320, 634, 909
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	7 cut(s)	158, 269, 395, 500, 545, 584, 617
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	56, 206, 836
Tru1I	TTAA	2 cut(s)	177, 540
Tru9I	TTAA	2 cut(s)	177, 540
TscAI	CASTG	1 cut(s)	1051
TseI	GCWGC	5 cut(s)	529, 761, 902, 918, 935
TspDTI	ATGAA	4 cut(s)	242, 594, 861, 973
TspRI	CASTG	1 cut(s)	1051
VneI	GTGCAC	1 cut(s)	1054
XapI	RAATTY	3 cut(s)	269, 395, 584
XhoI	CTCGAG	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	840
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.