Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

25284787 .. 25287787

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG260800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAGAAGACAGCTCCTCCGGAGTTCGCCTAATCAGTTTTTCCTTCATACTAGCCCTAATTACGACGATGACGGCAGCATCTTACGACGAGCCGTCGTCGACGTGTTTGACGCTTTACGAACAAGGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGCGCCGATTCCCTCCGGCGTTGCCAAACCGCCGTGCGTCAAGGCCGGAGAAACCGCCTCGAGGATCGTGCTCTGTGCGCTCTCGAACTTCGCATTCCGTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATGGGCATAATGTGGCAGCTGTTGTCGTTCCATTGATATCTACTATGTTTTTTGAAAGTTTTCTGATCGAAAGATCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

164

Amino Acids

18.18

Weight (kDa)

5.92

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	101
AccII	CGCG	2 cut(s)	140, 177
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	5 cut(s)	129, 138, 140, 204, 229
AclWI	GGATC	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	235, 278
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	366, 467
AhdI	GACNNNNNGTC	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	15, 370, 431
AluI	AGCT	3 cut(s)	15, 370, 431
Alw21I	GWGCWC	2 cut(s)	136, 247
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	77, 428
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	3 cut(s)	177, 179, 254
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	136, 247
BbvI	GCAGC	2 cut(s)	89, 440
BccI	CCATC	2 cut(s)	323, 407
BceAI	ACGGC	3 cut(s)	79, 90, 191
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	78, 429
BlsI	GCNGC	2 cut(s)	79, 430
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 278
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	235, 278
BsePI	GCGCGC	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	89, 440
Bsh1236I	CGCG	2 cut(s)	140, 177
BshFI	GGCC	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	136, 247
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	21, 190, 220
BslI	CCNNNNNNNGG	2 cut(s)	235, 278
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	136, 247
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	238, 477, 485
BspACI	CCGC	5 cut(s)	129, 138, 140, 204, 229
BspANI	GGCC	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	20
BspFNI	CGCG	2 cut(s)	140, 177
BspPI	GGATC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	138
BssHII	GCGCGC	1 cut(s)	175
BssMI	GATC	3 cut(s)	238, 477, 485
Bst2UI	CCWGG	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	140, 177
BstHHI	GCGC	3 cut(s)	177, 179, 254
BstKTI	GATC	3 cut(s)	241, 480, 488
BstMBI	GATC	3 cut(s)	238, 477, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 251
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	2 cut(s)	140, 177
BstV1I	GCAGC	2 cut(s)	89, 440
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	3 cut(s)	177, 179, 254
Cfr42I	CCGCGG	1 cut(s)	141
CseI	GACGC	2 cut(s)	121, 200
CviJI	RGCY	8 cut(s)	15, 56, 94, 219, 320, 362, 370, 431
CviKI_1	RGCY	8 cut(s)	15, 56, 94, 219, 320, 362, 370, 431
DpnI	GATC	3 cut(s)	240, 479, 487
DpnII	GATC	3 cut(s)	238, 477, 485
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	450
FaiI	YATR	6 cut(s)	50, 336, 359, 396, 420, 458
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	78, 429
Fsp4HI	GCNGC	2 cut(s)	78, 429
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	3 cut(s)	176, 178, 253
GluI	GCNGC	2 cut(s)	78, 429
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	21, 190, 220
HgaI	GACGC	2 cut(s)	121, 200
HhaI	GCGC	3 cut(s)	177, 179, 254
Hin6I	GCGC	3 cut(s)	175, 177, 252
HinP1I	GCGC	3 cut(s)	175, 177, 252
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	3 cut(s)	21, 190, 220
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	3 cut(s)	21, 257, 410
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	5 cut(s)	70, 92, 100, 103, 106
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 251
HpySE526I	ACGT	1 cut(s)	104
HspAI	GCGC	3 cut(s)	175, 177, 252
Kpn2I	TCCGGA	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	238, 477, 485
LmnI	GCTCC	2 cut(s)	20, 139
LpnPI	CCDG	6 cut(s)	34, 154, 203, 233, 264, 291
Lsp1109I	GCAGC	2 cut(s)	89, 440
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	104
MalI	GATC	3 cut(s)	240, 479, 487
MboI	GATC	3 cut(s)	238, 477, 485
MboII	GAAGA	3 cut(s)	17, 20, 398
MhlI	GDGCHC	2 cut(s)	136, 247
MluCI	AATT	2 cut(s)	60, 284
MnlI	CCTC	6 cut(s)	28, 174, 197, 229, 242, 292
MroI	TCCGGA	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	3 cut(s)	294, 303, 493
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	2 cut(s)	140, 431
MspI	CCGG	3 cut(s)	21, 190, 220
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	140, 177
MwoI	GCNNNNNNNGC	2 cut(s)	174, 251
NdeII	GATC	3 cut(s)	238, 477, 485
PaeR7I	CTCGAG	1 cut(s)	233
PauI	GCGCGC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	79, 430
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	233
PteI	GCGCGC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	339
SacII	CCGCGG	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	294, 303, 493
SatI	GCNGC	2 cut(s)	78, 429
Sau3AI	GATC	3 cut(s)	238, 477, 485
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	136, 247
SetI	ASST	6 cut(s)	17, 107, 303, 372, 401, 433
SfaNI	GCATC	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	233
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SgrDI	CGTCGACG	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	60, 284
SsiI	CCGC	5 cut(s)	129, 138, 140, 204, 229
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	4 cut(s)	101, 234, 258, 480
TasI	AATT	2 cut(s)	60, 284
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	3 cut(s)	294, 303, 493
Tru9I	TTAA	3 cut(s)	294, 303, 493
TseI	GCWGC	2 cut(s)	77, 428
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	261
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.