Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

17836160 .. 17838664

Gene Structure 2505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAACGTGCGGATTACATGTTGCAAGCAACAGACAAGCACAAAAGTCATCTGTATGACATGCCTCAGGTTCAATCAGATACCGCTGACCAACTGTTTGAAACTTTTACTGTTTCCTTTTGTTCTGATTTTAGGCGGACCTCTTATGCTGTTCCATAACCCGGATTTGTGTATGCACCTGCCAATGACTGGCGACAATGCTAAGAACCAATCTACAAATTCTGGAGGCTTTTCAACGTCCCTTCCCCTGTTTGATTCAATTTCATTCGACAAAACTGGTTTAAATAGTGAATCATTTGAATATTCAGAGCCTCAGAGGAGGTACAAATATTTTCTTTACTTGATTGTCTCTCGGGACGACTGGGAATTTGTTAATTATCTCACAGGTGGAGAGAGGGGCTTCTGTTTACTTAAGTGGTTTATGGGAAAAGCATTTTGGAGAATTTTTCCTAAAAGCCTCCTTGTGTTGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

159

Amino Acids

18.25

Weight (kDa)

9.02

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	3 cut(s)	10, 83, 135
AcsI	RAATTY	3 cut(s)	217, 365, 441
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	160, 188
AflII	CTTAAG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	73, 100, 234, 258, 299, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
Alw26I	GTCTC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	351
ApoI	RAATTY	3 cut(s)	217, 365, 441
ArsI	GACNNNNNNTTYG	4 cut(s)	79, 111, 350, 382
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 188
Bse1I	ACTGG	3 cut(s)	193, 280, 365
Bse21I	CCTNAGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	160, 188
BseMII	CTCAG	2 cut(s)	79, 326
BseNI	ACTGG	3 cut(s)	193, 280, 365
BseRI	GAGGAG	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	223, 368
BslI	CCNNNNNNNGG	2 cut(s)	160, 188
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	223, 368
BsoBI	CYCGRG	1 cut(s)	351
BspACI	CCGC	3 cut(s)	10, 83, 135
BspCNI	CTCAG	2 cut(s)	78, 325
BspMI	ACCTGC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	193, 280, 365
Bst4CI	ACNGT	2 cut(s)	95, 111
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	65, 201, 312
BstMAI	GTCTC	1 cut(s)	352
BstNSI	RCATGY	2 cut(s)	21, 63
BstSCI	CCNGG	1 cut(s)	159
Bsu36I	CCTNAGG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	18, 60
CviJI	RGCY	4 cut(s)	228, 310, 399, 456
CviKI_1	RGCY	4 cut(s)	228, 310, 399, 456
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	65, 201, 312
DraI	TTTAAA	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	351
FaeI	CATG	2 cut(s)	21, 63
FaiI	YATR	7 cut(s)	19, 56, 61, 146, 156, 173, 422
FaqI	GGGAC	2 cut(s)	223, 368
FatI	CATG	2 cut(s)	17, 59
GsuI	CTGGAG	1 cut(s)	243
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	2 cut(s)	21, 63
HinfI	GANTC	2 cut(s)	254, 290
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	78, 126, 307, 315
Hpy188III	TCNNGA	2 cut(s)	222, 353
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	251, 463
HpyCH4III	ACNGT	2 cut(s)	95, 111
HpyCH4IV	ACGT	2 cut(s)	6, 236
HpyCH4V	TGCA	2 cut(s)	24, 175
HpyF3I	CTNAG	3 cut(s)	65, 201, 312
HpySE526I	ACGT	2 cut(s)	6, 236
Hsp92II	CATG	2 cut(s)	21, 63
LpnPI	CCDG	9 cut(s)	52, 174, 174, 191, 207, 260, 261, 346, 369
MaeII	ACGT	2 cut(s)	6, 236
MluCI	AATT	5 cut(s)	217, 258, 365, 373, 441
MnlI	CCTC	8 cut(s)	74, 150, 218, 309, 312, 321, 387, 467
MseI	TTAA	4 cut(s)	281, 372, 411, 475
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
NciI	CCSGG	1 cut(s)	161
NlaIII	CATG	2 cut(s)	21, 63
NspI	RCATGY	2 cut(s)	21, 63
PaqCI	CACCTGC	1 cut(s)	186
PciI	ACATGT	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	254, 290
PflMI	CCANNNNNTGG	1 cut(s)	188
PscI	ACATGT	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	281, 372, 411, 475
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	8 cut(s)	9, 71, 142, 180, 239, 323, 388, 474
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	5 cut(s)	217, 258, 365, 373, 441
SsiI	CCGC	3 cut(s)	10, 83, 135
SspI	AATATT	2 cut(s)	302, 329
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	95, 111
TaiI	ACGT	2 cut(s)	9, 239
TaqI	TCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	217, 258, 365, 373, 441
TfiI	GAWTC	2 cut(s)	254, 290
Tru1I	TTAA	4 cut(s)	281, 372, 411, 475
Tru9I	TTAA	4 cut(s)	281, 372, 411, 475
TspDTI	ATGAA	2 cut(s)	17, 252
Van91I	CCANNNNNTGG	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	3 cut(s)	217, 365, 441
XceI	RCATGY	2 cut(s)	21, 63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.