Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

21075017 .. 21076329

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1095900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTTCAGAATGGGGTGAGAGCCTCAACATGGACGTATAATATTCTCATTGATGGTTTGTTCAGGAATGGAAGGGCAGAGGCTGCATATACACTATTTTGTGACTTAAAGAAGAAGGGTCAGTTTGTCGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGAGGGCCTGCTTGAGGAAGCACTAGGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTGATTTAGTTACTATTTCGTCACTTGTGATTGGGCTGTATAAAGAAGGACGGTGGGATTGGACGGACAAGCTCATGAAGCACATTAGAGATGGTAACCTAGTGCCGAGTGTTCTTAAATGGAAGGTTGATATGGAGGCTTCGCTGAAAAATCCGCAGAGAAATAGAAAGGATTATACTCCTTTGTTCCCAAGTAAAGGCGACTTGAGCGAGATTATGAGTTTAATAAAGTCTGCTGAATCAACAATGGATGCAGACCTAGATTCAGAGGCTGCCAGGGTTAAAGAAGATGATAAGAATTTGTCCACCGATACTGGTCAGTGGTCATCATCTCCACATATGGATCAATTGGCTAATCAACTTAAGTCCACCGACCACTCCTCGCAGCTGTTTTCATTGTCCAGGGGGCAAAGAGTTCAAGCAAAAGGGGAAAACACTTTTGATATTGACATGGTTAATACCTTTTTGTCCTTATTCTTGGCCAAGGGAAAGCTGAGCATAGCATGCAAATTGTTTGAGATTTTCAGTGATCTTGGTGAAAATCCTGTGAGTTATACTTATAATTCCACGATGAGTTCGTTCGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTACTCAATGAAATGGGAGAAAGGGTCTGCCCCACAGACATAGCTACATACAATGTGATAATTCAAGGCTTGGGGAAGATGGGTAGAGCGGATCTAGCGAGTTCTGTCCTGGATAAGCTAATTGAGCAGGGTGGTTATCTTGACGTGGTTATGTACAACACCTTGATTAATGCACTAGGCAAGGCTAGCAGGATTGATGAAGTAAACAAGCTCTTTGAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTTAATACACTTATTGAAGTTCATAGCAAAGCAGGTCGGCTAAAAGATGCATATAAGTTTTTGAAAATGATGCTCGATGCAGGCTGCACCCCGAACCATGTTACTGACACGACTTTAGATTTTCTGGGCAAGGAGATTGAGAAAATGAGGTACCAGAAGGCATCCATGGTGCGCAATAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

431

Amino Acids

48.24

Weight (kDa)

5.75

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	5 - 34	1.2e-06	PPR repeat
PPR_2	PF13041	10 - 57	1.5e-12	PPR repeat family
PPR	PF01535	12 - 40	2.6e-06	PPR repeat
PPR_1	PF12854	40 - 72	1.5e-06	PPR repeat
PPR	PF01535	46 - 76	2.1e-06	PPR repeat
PPR_2	PF13041	55 - 92	2.6e-06	PPR repeat family
PPR_2	PF13041	260 - 308	7.4e-12	PPR repeat family
PPR_3	PF13812	317 - 376	1.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	329 - 358	8.8e-07	PPR repeat
PPR_2	PF13041	330 - 373	3.1e-15	PPR repeat family
PPR	PF01535	332 - 362	4.4e-08	PPR repeat
PPR_3	PF13812	352 - 403	6.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	361 - 392	2.4e-10	PPR repeat
PPR_2	PF13041	364 - 407	2.8e-12	PPR repeat family
PPR	PF01535	367 - 397	3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
Acc16I	TGCGCA	1 cut(s)	1277
Acc36I	ACCTGC	1 cut(s)	1127
Acc65I	GGTACC	1 cut(s)	1254
AccB1I	GGYRCC	1 cut(s)	1254
AccBSI	CCGCTC	1 cut(s)	935
AciI	CCGC	2 cut(s)	386, 935
AclWI	GGATC	2 cut(s)	582, 945
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	3 cut(s)	849, 1001, 1256
AfiI	CCNNNNNNNGG	3 cut(s)	30, 184, 428
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	650, 832, 911, 1121, 1168
AjiI	CACGTC	1 cut(s)	991
AjnI	CCWGG	3 cut(s)	506, 632, 954
AluBI	AGCT	6 cut(s)	304, 619, 724, 890, 964, 1057
AluI	AGCT	6 cut(s)	304, 619, 724, 890, 964, 1057
AlwI	GGATC	2 cut(s)	582, 945
AlwNI	CAGNNNCTG	2 cut(s)	83, 503
AoxI	GGCC	2 cut(s)	175, 711
ApeKI	GCWGC	4 cut(s)	83, 503, 616, 1188
ApoI	RAATTY	1 cut(s)	529
AseI	ATTAAT	1 cut(s)	1014
Asp718I	GGTACC	1 cut(s)	1254
AspLEI	GCGC	1 cut(s)	1278
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	28, 779
AsuNHI	GCTAGC	1 cut(s)	1031
BalI	TGGCCA	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	1254
BbvI	GCAGC	4 cut(s)	70, 490, 628, 1175
BccI	CCATC	4 cut(s)	47, 125, 317, 919
BciT130I	CCWGG	3 cut(s)	508, 634, 956
BfaI	CTAG	6 cut(s)	194, 332, 491, 941, 1022, 1032
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	1127
BisI	GCNGC	4 cut(s)	84, 504, 617, 1189
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	4 cut(s)	85, 505, 618, 1190
Bme1390I	CCNGG	3 cut(s)	508, 634, 956
BmgBI	CACGTC	1 cut(s)	991
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	1256
BmrFI	CCNGG	3 cut(s)	508, 634, 956
BmsI	GCATC	5 cut(s)	472, 1141, 1164, 1171, 1274
BmtI	GCTAGC	1 cut(s)	1035
Bpu1102I	GCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	2 cut(s)	203, 457
BsaJI	CCNNGG	4 cut(s)	507, 633, 714, 1269
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 184, 428
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	3 cut(s)	508, 634, 956
BseDI	CCNNGG	4 cut(s)	507, 633, 714, 1269
BseGI	GGATG	3 cut(s)	487, 1265, 1291
BseLI	CCNNNNNNNGG	3 cut(s)	30, 184, 428
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	4 cut(s)	70, 490, 628, 1175
BsgI	GTGCAG	1 cut(s)	1174
BshFI	GGCC	2 cut(s)	177, 713
BshNI	GGYRCC	1 cut(s)	1254
BslI	CCNNNNNNNGG	3 cut(s)	30, 184, 428
BsnI	GGCC	2 cut(s)	177, 713
Bsp1407I	TGTACA	1 cut(s)	999
Bsp143I	GATC	3 cut(s)	574, 760, 937
Bsp1720I	GCTNAGC	1 cut(s)	725
Bsp19I	CCATGG	1 cut(s)	1269
BspACI	CCGC	2 cut(s)	386, 935
BspANI	GGCC	2 cut(s)	177, 713
BspCNI	CTCAG	1 cut(s)	717
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	1256
BspMI	ACCTGC	1 cut(s)	1127
BspOI	GCTAGC	1 cut(s)	1035
BspPI	GGATC	2 cut(s)	582, 945
BspT107I	GGYRCC	1 cut(s)	1254
BspTI	CTTAAG	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	935
BsrGI	TGTACA	1 cut(s)	999
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	4 cut(s)	507, 633, 714, 1269
BssMI	GATC	3 cut(s)	574, 760, 937
BssT1I	CCWWGG	2 cut(s)	714, 1269
Bst2UI	CCWGG	3 cut(s)	508, 634, 956
Bst4CI	ACNGT	2 cut(s)	232, 285
Bst6I	CTCTTC	1 cut(s)	1067
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	2 cut(s)	83, 735
BstAUI	TGTACA	1 cut(s)	999
BstC8I	GCNNGC	4 cut(s)	179, 736, 1033, 1186
BstDEI	CTNAG	1 cut(s)	725
BstDSI	CCRYGG	1 cut(s)	1269
BstEII	GGTNACC	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	3 cut(s)	487, 1265, 1291
BstHHI	GCGC	1 cut(s)	1278
BstKTI	GATC	3 cut(s)	577, 763, 940
BstMBI	GATC	3 cut(s)	574, 760, 937
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 310, 438, 735, 941, 970, 1032, 1063
BstNI	CCWGG	3 cut(s)	508, 634, 956
BstNSI	RCATGY	1 cut(s)	738
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	506, 632, 954
BstV1I	GCAGC	4 cut(s)	70, 490, 628, 1175
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	177, 713
BtgI	CCRYGG	1 cut(s)	1269
BtrI	CACGTC	1 cut(s)	991
BtsCI	GGATG	3 cut(s)	487, 1265, 1291
BtsIMutI	CAGTG	2 cut(s)	557, 763
BveI	ACCTGC	1 cut(s)	1127
Cac8I	GCNNGC	4 cut(s)	179, 736, 1033, 1186
CaiI	CAGNNNCTG	2 cut(s)	83, 503
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	1 cut(s)	1278
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	848, 1000, 1255
CviAII	CATG	7 cut(s)	30, 307, 682, 735, 840, 1202, 1270
CviQI	GTAC	3 cut(s)	848, 1000, 1255
DdeI	CTNAG	1 cut(s)	725
DpnI	GATC	3 cut(s)	576, 762, 939
DpnII	GATC	3 cut(s)	574, 760, 937
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	1067
EarI	CTCTTC	1 cut(s)	1067
Eco130I	CCWWGG	2 cut(s)	714, 1269
Eco91I	GGTNACC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	506, 632, 954
EcoT14I	CCWWGG	2 cut(s)	714, 1269
EcoT22I	ATGCAT	1 cut(s)	1156
ErhI	CCWWGG	2 cut(s)	714, 1269
FaeI	CATG	7 cut(s)	33, 310, 685, 738, 843, 1205, 1273
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	7 cut(s)	29, 306, 681, 734, 839, 1201, 1269
FauNDI	CATATG	1 cut(s)	570
Fnu4HI	GCNGC	4 cut(s)	84, 504, 617, 1189
FokI	GGATG	2 cut(s)	494, 1252
Fsp4HI	GCNGC	4 cut(s)	84, 504, 617, 1189
FspBI	CTAG	6 cut(s)	194, 332, 491, 941, 1022, 1032
FspI	TGCGCA	1 cut(s)	1277
GlaI	GCGC	1 cut(s)	1277
GluI	GCNGC	4 cut(s)	84, 504, 617, 1189
HaeIII	GGCC	2 cut(s)	177, 713
HhaI	GCGC	1 cut(s)	1278
Hin1II	CATG	7 cut(s)	33, 310, 685, 738, 843, 1205, 1273
Hin6I	GCGC	1 cut(s)	1276
HinP1I	GCGC	1 cut(s)	1276
HinfI	GANTC	2 cut(s)	470, 494
HphI	GGTGA	2 cut(s)	28, 779
Hpy166II	GTNNAC	4 cut(s)	537, 600, 848, 1051
Hpy188I	TCNGA	2 cut(s)	9, 499
Hpy188III	TCNNGA	5 cut(s)	64, 307, 817, 986, 1091
Hpy8I	GTNNAC	4 cut(s)	537, 600, 848, 1051
HpyAV	CCTTC	6 cut(s)	66, 109, 272, 349, 814, 1255
HpyCH4III	ACNGT	2 cut(s)	232, 285
HpyCH4IV	ACGT	2 cut(s)	35, 990
HpyCH4V	TGCA	8 cut(s)	86, 160, 485, 738, 1019, 1154, 1184, 1191
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 310, 438, 735, 941, 970, 1032, 1063
HpyF3I	CTNAG	1 cut(s)	725
HpySE526I	ACGT	2 cut(s)	35, 990
Hsp92II	CATG	7 cut(s)	33, 310, 685, 738, 843, 1205, 1273
HspAI	GCGC	1 cut(s)	1276
KpnI	GGTACC	1 cut(s)	1258
Kzo9I	GATC	3 cut(s)	574, 760, 937
Lsp1109I	GCAGC	4 cut(s)	70, 490, 628, 1175
LweI	GCATC	5 cut(s)	472, 1141, 1164, 1171, 1274
MaeI	CTAG	6 cut(s)	194, 332, 491, 941, 1022, 1032
MaeII	ACGT	2 cut(s)	35, 990
MaeIII	GTNAC	7 cut(s)	101, 136, 241, 252, 326, 1099, 1204
MalI	GATC	3 cut(s)	576, 762, 939
MbiI	CCGCTC	1 cut(s)	935
MboI	GATC	3 cut(s)	574, 760, 937
MboII	GAAGA	5 cut(s)	124, 218, 530, 934, 1084
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	1 cut(s)	937
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	6 cut(s)	529, 578, 740, 793, 906, 966
MluNI	TGGCCA	1 cut(s)	713
Mox20I	TGGCCA	1 cut(s)	713
Mph1103I	ATGCAT	1 cut(s)	1156
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	8 cut(s)	107, 348, 455, 513, 594, 687, 1014, 1107
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	619
MspCI	CTTAAG	1 cut(s)	593
MspR9I	CCNGG	3 cut(s)	508, 634, 956
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	3 cut(s)	508, 634, 956
MwoI	GCNNNNNNNGC	8 cut(s)	83, 310, 438, 735, 941, 970, 1032, 1063
NcoI	CCATGG	1 cut(s)	1269
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	3 cut(s)	574, 760, 937
NheI	GCTAGC	1 cut(s)	1031
NlaIII	CATG	7 cut(s)	33, 310, 685, 738, 843, 1205, 1273
NlaIV	GGNNCC	1 cut(s)	1256
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	3 cut(s)	101, 252, 1099
NsbI	TGCGCA	1 cut(s)	1277
NsiI	ATGCAT	1 cut(s)	1156
NspI	RCATGY	1 cut(s)	738
PaeI	GCATGC	1 cut(s)	738
PagI	TCATGA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	470, 494
PfoI	TCCNGGA	1 cut(s)	954
PkrI	GCNGC	4 cut(s)	85, 505, 618, 1190
PshBI	ATTAAT	1 cut(s)	1014
PsiI	TTATAA	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	506, 632, 954
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	3 cut(s)	506, 632, 954
PspN4I	GGNNCC	1 cut(s)	1256
PspPI	GGNCC	1 cut(s)	175
PstNI	CAGNNNCTG	2 cut(s)	83, 503
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	3 cut(s)	849, 1001, 1256
RsaNI	GTAC	3 cut(s)	848, 1000, 1255
SaqAI	TTAA	8 cut(s)	107, 348, 455, 513, 594, 687, 1014, 1107
SatI	GCNGC	4 cut(s)	84, 504, 617, 1189
Sau3AI	GATC	3 cut(s)	574, 760, 937
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	3 cut(s)	508, 634, 956
SfaNI	GCATC	5 cut(s)	472, 1141, 1164, 1171, 1274
SmlI	CTYRAG	3 cut(s)	182, 436, 593
SmoI	CTYRAG	3 cut(s)	182, 436, 593
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	6 cut(s)	529, 578, 740, 793, 906, 966
SsiI	CCGC	2 cut(s)	386, 935
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	6 cut(s)	194, 332, 491, 941, 1022, 1032
StyD4I	CCNGG	3 cut(s)	506, 632, 954
StyI	CCWWGG	2 cut(s)	714, 1269
TaaI	ACNGT	2 cut(s)	232, 285
TaiI	ACGT	2 cut(s)	38, 993
TaqI	TCGA	2 cut(s)	129, 1179
TasI	AATT	6 cut(s)	529, 578, 740, 793, 906, 966
TatI	WGTACW	2 cut(s)	847, 999
TfiI	GAWTC	2 cut(s)	470, 494
Tru1I	TTAA	8 cut(s)	107, 348, 455, 513, 594, 687, 1014, 1107
Tru9I	TTAA	8 cut(s)	107, 348, 455, 513, 594, 687, 1014, 1107
TscAI	CASTG	2 cut(s)	557, 763
TseFI	GTSAC	3 cut(s)	101, 252, 1099
TseI	GCWGC	4 cut(s)	83, 503, 616, 1188
Tsp45I	GTSAC	3 cut(s)	101, 252, 1099
TspDTI	ATGAA	6 cut(s)	323, 615, 870, 1059, 1085, 1115
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	557, 763
Vha464I	CTTAAG	1 cut(s)	593
VspI	ATTAAT	1 cut(s)	1014
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	738
XspI	CTAG	6 cut(s)	194, 332, 491, 941, 1022, 1032
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.