Rh1DG294900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003384
Physical Location & Seq
Forward (+)
52104461 .. 52106506
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG294900.1

Sequence Viewer

Length: 2046 bp
ATGAAACAGCATGCTGTAATAGTCGATTCCGGAACCTTCAAGTCTTTGCTGGACGCCTTCATAAGGGCAGGTAAGTTTGACATGGCAATCGAAATTTTAGACATTATGCAAGAACTGGGTGCTGAGCTGAGTACGGATATGTACAACTCGGTGTTGGTTGCTTTGGTTAGGAAGGGTCAGTTGGGTTTGGCTATGTCTATTTTGGTTAAGCTTCTAGAAGGTGGGTCTTCTCAAGTACCCAATTGCATTGCCTGTAATGAATTGCTGGTGGGTCTTAGGAAAGGTGACATGAGGGTAGAGTTTAAGCAGGTGTTTGATAAGCTTAGGGGGAATGAGTGGTTTGAGATGGATACTTGGGGTTATAATATTTGTATTCATGCGTTTGGGTGTTGGGGTGATCTGGGTACTAGTTTGAGTTTATTTAAGGAGATGAAAGACTTGAATTCGGACTCGGTTTTTCCTGATTTGTCTACTTATAATAGCCTCATTCATGTGCTGTGTTTGGTTGGGAAGGTGGATGATGCAGTTACTGTGTGGGAGGAGTTGAAGTGTTCTGGTCATGAGCCGGATGCCATTACATACCGGATTCTTATTCAGGGCTGTTGTAAGTGTTATCGAATAGAGGAAGCTACCAAGATTTTTAGTGAAATGCAGAACAATGGGTACAATCCGGATACGGTTGTTTATAATTCGTTGATGGATGGGTTGTTCAAGGCGAGGAAAGTTAATGAAGGGTGTCAGATGTTTGAGAGGATGGTTCAGTATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTGATTGATGGGTTGTTTAGGAATGCAAGGGCCGAGGCTGCTTACACTATATTTTGTGACTTGAAGAAGAAAGGTCAGTTTGTGGATGGTGTTACGTATAGCATTGTTGCTCTGCAACTTTGTAGGGAGGGTCTGCTCGAGGAGGCGCTAGAATTGGTGGAAGAAATGGAAATGCGAGGCCTTACTGTTGATTTGGTTACTACATCAACACTCATGATTGGGCTGTATAAGCATAGTCGATGGGATTGGACAGACAAGCTCATGAAGCGTATTAGGGATGGTAATCTGCTGCCTAGTGTTCTTAGATGGAAAGTCGATATGGAAGCTACAATGAAAGCTCCACAGAGCAAGAAAAAGGACCTTACACCACTGTTCCCAAGTAAAGGTGATTTCAGCGACGTTTTGAGTCTAATAAGTTCTGCCGCCTCGAAAATGGATGGAGTCATTGAATCAGATGATGCTGGGGTTAAAGATGATAATAATTCATCTACAGATATTGATCAGTGGTCATCATCTCCACATATGGATCACTTAGCCAATCAATTGAAGTCCACTGACCAAGCCTCTCAGCTGTTTTCGCTATCTAGAGGGCAACGAGTTCAAGCCAAAGGAGAAAGCACTTTTGATATTGATATGGTAAATACTTTCTTATCCCTATTTTTAGCCAAGGGGAAGCTGAGCATAGCTTGCAAATTGTTTGAGATTTTCAGTGATGCGGGTGCAAACCCTGTGAGTTACACTTATAATTCCATCTTGAGTTCGTTTGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTGCTCAGTGAAATGGGAGAAAAAGTTTGCCCCACAGATATAGCAACATACAATATGATAATTCAAGGCTTGGGGAAGATGGGAAGGGCCGATCTAGCCAGTAGTGTTCTGGATAAGCTAATGAAGCAGGGTGGTTATCTTGATGTTGTCATGTACAACACCTTGATTAATGCGCTGGGGAAGGCTAACCGAATTGACGAAGTAAACAAGCTATTTAAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTCAATACGCTTATTGAAGTTCATAGTAAAGCAGGTCGACTGAAAGATGCATATAAATTTCTGAAAATGATGCTGGATTCAGGCTGCACACCAAACCATGTTACTGACACCACTTTGGATTTTCTGGGGAAGGAGATTGAGAAATCGAGGTACCAAAAGGCATCATTTGTACGAAATAAGGATGACTCCTGA

Protein Analysis

681

Amino Acids

76.17

Weight (kDa)

5.61

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 132 - 267 9.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 145 - 201 5.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 152 - 182 5e-09 PPR repeat
PPR_2 PF13041 154 - 203 3.4e-16 PPR repeat family
PPR_1 PF12854 186 - 218 5.9e-10 PPR repeat
PPR PF01535 192 - 221 1.3e-06 PPR repeat
PPR_2 PF13041 196 - 227 4.1e-06 PPR repeat family
PPR_3 PF13812 212 - 269 9.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 220 - 253 1.1e-07 PPR repeat
PPR_2 PF13041 224 - 272 2.2e-14 PPR repeat family
PPR PF01535 227 - 257 1e-05 PPR repeat
PPR_2 PF13041 262 - 302 4.4e-09 PPR repeat family
PPR_2 PF13041 306 - 343 3.8e-06 PPR repeat family
PPR_2 PF13041 510 - 558 8.9e-12 PPR repeat family
PPR_3 PF13812 567 - 625 1.6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 579 - 608 4.2e-07 PPR repeat
PPR_2 PF13041 580 - 623 1.5e-15 PPR repeat family
PPR PF01535 582 - 612 2.5e-08 PPR repeat
PPR_3 PF13812 602 - 653 1.6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 611 - 642 4.3e-10 PPR repeat
PPR_2 PF13041 614 - 657 2.8e-12 PPR repeat family
PPR PF01535 617 - 647 2.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 363, 477, 687, 1542
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 3 cut(s) 59, 298, 1877
Acc65I GGTACC 1 cut(s) 2004
AccB1I GGYRCC 1 cut(s) 2004
AccI GTMKAC 2 cut(s) 470, 1891
AccIII TCCGGA 2 cut(s) 29, 670
AciI CCGC 2 cut(s) 1221, 1514
AclWI GGATC 1 cut(s) 1332
AcsI RAATTY 3 cut(s) 93, 442, 1910
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 8 cut(s) 133, 143, 237, 406, 665, 1751, 2006, 2025
AfiI CCNNNNNNNGG 3 cut(s) 63, 783, 1181
AhlI ACTAGT 1 cut(s) 407
AjiI CACGTC 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
Alw21I GWGCWC 1 cut(s) 1602
AlwI GGATC 1 cut(s) 1332
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 935
Aor13HI TCCGGA 2 cut(s) 29, 670
AoxI GGCC 3 cut(s) 828, 976, 1683
ApeKI GCWGC 3 cut(s) 836, 1087, 1938
ApoI RAATTY 3 cut(s) 93, 442, 1910
AseI ATTAAT 1 cut(s) 1764
Asp718I GGTACC 1 cut(s) 2004
AspLEI GCGC 2 cut(s) 946, 1771
AspS9I GGNCC 3 cut(s) 828, 1156, 1683
AsuHPI GGTGA 4 cut(s) 296, 407, 781, 1196
AvaI CYCGRG 1 cut(s) 935
AvaII GGWCC 1 cut(s) 1156
BaeI ACNNNNGTAYC 2 cut(s) 666, 699
BanI GGYRCC 1 cut(s) 2004
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 1602
BbvI GCAGC 3 cut(s) 823, 1074, 1925
BciVI GTATCC 2 cut(s) 343, 667
BclI TGATCA 1 cut(s) 1297
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 6 cut(s) 215, 408, 947, 1092, 1383, 1691
BfmI CTRYAG 1 cut(s) 1287
BfoI RGCGCY 1 cut(s) 947
BfuAI ACCTGC 3 cut(s) 59, 298, 1877
BfuI GTATCC 2 cut(s) 343, 667
BisI GCNGC 4 cut(s) 837, 1088, 1221, 1939
BlpI GCTNAGC 2 cut(s) 123, 1475
BlsI GCNGC 4 cut(s) 838, 1089, 1222, 1940
Bme18I GGWCC 1 cut(s) 1156
BmeT110I CYCGRG 1 cut(s) 935
BmgBI CACGTC 1 cut(s) 783
BmgT120I GGNCC 3 cut(s) 828, 1156, 1683
BmiI GGNNCC 2 cut(s) 34, 2006
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 7 cut(s) 511, 559, 1246, 1501, 1891, 1914, 2024
BmuI ACTGGG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 323
Bpu1102I GCTNAGC 2 cut(s) 123, 1475
BpuEI CTTGAG 2 cut(s) 216, 1573
BsaAI YACGTR 1 cut(s) 894
BsaBI GATNNNNATC 2 cut(s) 1080, 1296
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 831, 1464
BsaWI WCCGGW 3 cut(s) 29, 582, 670
BsaXI ACNNNNNCTCC 4 cut(s) 533, 563, 1605, 1635
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 783, 1181
Bse1I ACTGG 2 cut(s) 120, 1695
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 2 cut(s) 1080, 1296
BseAI TCCGGA 2 cut(s) 29, 670
BseDI CCNNGG 2 cut(s) 831, 1464
BseGI GGATG 8 cut(s) 523, 574, 706, 759, 889, 1081, 1240, 2041
BseJI GATNNNNATC 2 cut(s) 1080, 1296
BseLI CCNNNNNNNGG 3 cut(s) 63, 783, 1181
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 5 cut(s) 114, 119, 1379, 1466, 1615
BseNI ACTGG 2 cut(s) 120, 1695
BseRI GAGGAG 2 cut(s) 554, 953
BseXI GCAGC 3 cut(s) 823, 1074, 1925
BseYI CCCAGC 2 cut(s) 1259, 1771
BsgI GTGCAG 1 cut(s) 1924
BshFI GGCC 3 cut(s) 830, 978, 1685
BshNI GGYRCC 1 cut(s) 2004
BsiHKAI GWGCWC 1 cut(s) 1602
BsiHKCI CYCGRG 1 cut(s) 935
BsiSI CCGG 4 cut(s) 30, 566, 583, 671
BslI CCNNNNNNNGG 3 cut(s) 63, 783, 1181
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 3 cut(s) 830, 978, 1685
BsoBI CYCGRG 1 cut(s) 935
Bsp1286I GDGCHC 1 cut(s) 1602
Bsp13I TCCGGA 2 cut(s) 29, 670
Bsp1407I TGTACA 2 cut(s) 141, 1749
Bsp143I GATC 4 cut(s) 397, 1297, 1324, 1687
Bsp1720I GCTNAGC 2 cut(s) 123, 1475
BspACI CCGC 2 cut(s) 1221, 1514
BspANI GGCC 3 cut(s) 830, 978, 1685
BspCNI CTCAG 5 cut(s) 115, 120, 1378, 1467, 1614
BspEI TCCGGA 2 cut(s) 29, 670
BspHI TCATGA 3 cut(s) 559, 1011, 1059
BspLI GGNNCC 2 cut(s) 34, 2006
BspMI ACCTGC 3 cut(s) 59, 298, 1877
BspPI GGATC 1 cut(s) 1332
BspT107I GGYRCC 1 cut(s) 2004
BsrDI GCAATG 1 cut(s) 246
BsrGI TGTACA 2 cut(s) 141, 1749
BsrI ACTGG 2 cut(s) 120, 1695
BssECI CCNNGG 2 cut(s) 831, 1464
BssMI GATC 4 cut(s) 397, 1297, 1324, 1687
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 1464
Bst4CI ACNGT 4 cut(s) 532, 679, 985, 1170
Bst6I CTCTTC 1 cut(s) 1817
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 1485
BstAUI TGTACA 2 cut(s) 141, 1749
BstBAI YACGTR 1 cut(s) 894
BstC8I GCNNGC 2 cut(s) 12, 1486
BstDEI CTNAG 9 cut(s) 123, 128, 275, 323, 1100, 1330, 1365, 1475, 1601
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 8 cut(s) 523, 574, 706, 759, 889, 1081, 1240, 2041
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 2 cut(s) 946, 1771
BstKTI GATC 4 cut(s) 400, 1300, 1327, 1690
BstMBI GATC 4 cut(s) 397, 1297, 1324, 1687
BstMWI GCNNNNNNNGC 8 cut(s) 836, 1027, 1063, 1375, 1485, 1691, 1720, 1813
BstNSI RCATGY 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 1287
BstSNI TACGTA 1 cut(s) 894
BstV1I GCAGC 3 cut(s) 823, 1074, 1925
BstV2I GAAGAC 1 cut(s) 219
BsuI GTATCC 2 cut(s) 343, 667
BsuRI GGCC 3 cut(s) 830, 978, 1685
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 8 cut(s) 523, 574, 706, 759, 889, 1081, 1240, 2041
BtsIMutI CAGTG 5 cut(s) 1166, 1307, 1350, 1513, 1609
BveI ACCTGC 3 cut(s) 59, 298, 1877
Cac8I GCNNGC 2 cut(s) 12, 1486
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 3 cut(s) 559, 1011, 1059
CfoI GCGC 2 cut(s) 946, 1771
Cfr13I GGNCC 3 cut(s) 828, 1156, 1683
CseI GACGC 1 cut(s) 62
Csp6I GTAC 8 cut(s) 132, 142, 236, 405, 664, 1750, 2005, 2024
CviQI GTAC 8 cut(s) 132, 142, 236, 405, 664, 1750, 2005, 2024
DdeI CTNAG 9 cut(s) 123, 128, 275, 323, 1100, 1330, 1365, 1475, 1601
DpnI GATC 4 cut(s) 399, 1299, 1326, 1689
DpnII GATC 4 cut(s) 397, 1297, 1324, 1687
Eam1104I CTCTTC 1 cut(s) 1817
EarI CTCTTC 1 cut(s) 1817
Eco105I TACGTA 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 1464
Eco147I AGGCCT 1 cut(s) 978
Eco47I GGWCC 1 cut(s) 1156
Eco88I CYCGRG 1 cut(s) 935
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 1156
EcoRI GAATTC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 1464
EcoT22I ATGCAT 1 cut(s) 1906
ErhI CCWWGG 1 cut(s) 1464
FalI AAGNNNNNCTT 2 cut(s) 1562, 1594
FauI CCCGC 1 cut(s) 1507
FauNDI CATATG 1 cut(s) 1320
FbaI TGATCA 1 cut(s) 1297
FblI GTMKAC 2 cut(s) 470, 1891
Fnu4HI GCNGC 4 cut(s) 837, 1088, 1221, 1939
FokI GGATG 7 cut(s) 530, 581, 713, 766, 896, 1088, 1247
Fsp4HI GCNGC 4 cut(s) 837, 1088, 1221, 1939
FspBI CTAG 6 cut(s) 215, 408, 947, 1092, 1383, 1691
GlaI GCGC 2 cut(s) 945, 1770
GluI GCNGC 4 cut(s) 837, 1088, 1221, 1939
GsaI CCCAGC 2 cut(s) 1263, 1775
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 3 cut(s) 830, 978, 1685
HapII CCGG 4 cut(s) 30, 566, 583, 671
HgaI GACGC 1 cut(s) 62
HhaI GCGC 2 cut(s) 946, 1771
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 2 cut(s) 944, 1769
HinP1I GCGC 2 cut(s) 944, 1769
HincII GTYRAC 1 cut(s) 1892
HindII GTYRAC 1 cut(s) 1892
HindIII AAGCTT 2 cut(s) 209, 320
HinfI GANTC 8 cut(s) 26, 449, 586, 1204, 1239, 1247, 1931, 2039
HpaII CCGG 4 cut(s) 30, 566, 583, 671
HphI GGTGA 4 cut(s) 296, 407, 781, 1196
Hpy166II GTNNAC 5 cut(s) 471, 786, 1350, 1801, 1892
Hpy188I TCNGA 5 cut(s) 448, 741, 801, 1252, 1917
Hpy8I GTNNAC 5 cut(s) 471, 786, 1350, 1801, 1892
Hpy99I CGWCG 2 cut(s) 784, 1199
HpyCH4III ACNGT 4 cut(s) 532, 679, 985, 1170
HpyCH4IV ACGT 4 cut(s) 782, 788, 893, 1197
HpyF10VI GCNNNNNNNGC 8 cut(s) 836, 1027, 1063, 1375, 1485, 1691, 1720, 1813
HpyF3I CTNAG 9 cut(s) 123, 128, 275, 323, 1100, 1330, 1365, 1475, 1601
HpySE526I ACGT 4 cut(s) 782, 788, 893, 1197
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 2 cut(s) 944, 1769
Kpn2I TCCGGA 2 cut(s) 29, 670
KpnI GGTACC 1 cut(s) 2008
Ksp22I TGATCA 1 cut(s) 1297
Kzo9I GATC 4 cut(s) 397, 1297, 1324, 1687
LmnI GCTCC 1 cut(s) 1141
Lsp1109I GCAGC 3 cut(s) 823, 1074, 1925
LweI GCATC 7 cut(s) 511, 559, 1246, 1501, 1891, 1914, 2024
MaeI CTAG 6 cut(s) 215, 408, 947, 1092, 1383, 1691
MaeII ACGT 4 cut(s) 782, 788, 893, 1197
MaeIII GTNAC 8 cut(s) 284, 526, 854, 889, 994, 1532, 1849, 1954
MalI GATC 4 cut(s) 399, 1299, 1326, 1689
MboI GATC 4 cut(s) 397, 1297, 1324, 1687
MboII GAAGA 6 cut(s) 219, 874, 877, 971, 1684, 1834
MfeI CAATTG 2 cut(s) 241, 1340
MhlI GDGCHC 1 cut(s) 1602
MlyI GAGTC 4 cut(s) 443, 1213, 1248, 2033
Mph1103I ATGCAT 1 cut(s) 1906
MroI TCCGGA 2 cut(s) 29, 670
MseI TTAA 7 cut(s) 207, 303, 423, 726, 1266, 1764, 1812
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 1369
MspI CCGG 4 cut(s) 30, 566, 583, 671
MunI CAATTG 2 cut(s) 241, 1340
Mva1269I GAATGC 1 cut(s) 826
MwoI GCNNNNNNNGC 8 cut(s) 836, 1027, 1063, 1375, 1485, 1691, 1720, 1813
NdeI CATATG 1 cut(s) 1320
NdeII GATC 4 cut(s) 397, 1297, 1324, 1687
NlaIV GGNNCC 2 cut(s) 34, 2006
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 3 cut(s) 284, 854, 1849
NsiI ATGCAT 1 cut(s) 1906
NspI RCATGY 1 cut(s) 14
PaeI GCATGC 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 935
PagI TCATGA 3 cut(s) 559, 1011, 1059
PaqCI CACCTGC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 978
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 4 cut(s) 26, 586, 1247, 1931
PkrI GCNGC 4 cut(s) 838, 1089, 1222, 1940
PleI GAGTC 4 cut(s) 443, 1212, 1247, 2033
PpsI GAGTC 4 cut(s) 443, 1212, 1247, 2033
Ppu21I YACGTR 1 cut(s) 894
PpuMI RGGWCCY 1 cut(s) 1156
PshBI ATTAAT 1 cut(s) 1764
PsiI TTATAA 4 cut(s) 363, 477, 687, 1542
Psp5II RGGWCCY 1 cut(s) 1156
PspFI CCCAGC 2 cut(s) 1259, 1771
PspN4I GGNNCC 2 cut(s) 34, 2006
PspPI GGNCC 3 cut(s) 828, 1156, 1683
PspPPI RGGWCCY 1 cut(s) 1156
PspXI VCTCGAGB 1 cut(s) 935
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
PstNI CAGNNNCTG 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 1369
RsaI GTAC 8 cut(s) 133, 143, 237, 406, 665, 1751, 2006, 2025
RsaNI GTAC 8 cut(s) 132, 142, 236, 405, 664, 1750, 2005, 2024
RseI CAYNNNNRTG 1 cut(s) 491
SalI GTCGAC 1 cut(s) 1890
SaqAI TTAA 7 cut(s) 207, 303, 423, 726, 1266, 1764, 1812
SatI GCNGC 4 cut(s) 837, 1088, 1221, 1939
Sau3AI GATC 4 cut(s) 397, 1297, 1324, 1687
Sau96I GGNCC 3 cut(s) 828, 1156, 1683
SchI GAGTC 4 cut(s) 443, 1213, 1248, 2033
SduI GDGCHC 1 cut(s) 1602
SfaNI GCATC 7 cut(s) 511, 559, 1246, 1501, 1891, 1914, 2024
SfcI CTRYAG 1 cut(s) 1287
Sfr274I CTCGAG 1 cut(s) 935
SinI GGWCC 1 cut(s) 1156
SlaI CTCGAG 1 cut(s) 935
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 3 cut(s) 231, 935, 1552
SmoI CTYRAG 3 cut(s) 231, 935, 1552
SnaBI TACGTA 1 cut(s) 894
SpeI ACTAGT 1 cut(s) 407
SphI GCATGC 1 cut(s) 14
SseBI AGGCCT 1 cut(s) 978
SsiI CCGC 2 cut(s) 1221, 1514
SspI AATATT 2 cut(s) 367, 796
SspMI CTAG 6 cut(s) 215, 408, 947, 1092, 1383, 1691
StuI AGGCCT 1 cut(s) 978
StyI CCWWGG 1 cut(s) 1464
TaaI ACNGT 4 cut(s) 532, 679, 985, 1170
TaiI ACGT 4 cut(s) 785, 791, 896, 1200
TatI WGTACW 2 cut(s) 141, 1749
TauI GCSGC 1 cut(s) 1223
TfiI GAWTC 4 cut(s) 26, 586, 1247, 1931
Tru1I TTAA 7 cut(s) 207, 303, 423, 726, 1266, 1764, 1812
Tru9I TTAA 7 cut(s) 207, 303, 423, 726, 1266, 1764, 1812
TscAI CASTG 5 cut(s) 1173, 1307, 1357, 1513, 1609
TseFI GTSAC 3 cut(s) 284, 854, 1849
TseI GCWGC 3 cut(s) 836, 1087, 1938
Tsp45I GTSAC 3 cut(s) 284, 854, 1849
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 5 cut(s) 1173, 1307, 1357, 1513, 1609
VpaK11BI GGWCC 1 cut(s) 1156
VspI ATTAAT 1 cut(s) 1764
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 3 cut(s) 93, 442, 1910
XbaI TCTAGA 2 cut(s) 214, 1382
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 1702
XhoI CTCGAG 1 cut(s) 935
XmiI GTMKAC 2 cut(s) 470, 1891
XspI CTAG 6 cut(s) 215, 408, 947, 1092, 1383, 1691
Zsp2I ATGCAT 1 cut(s) 1906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.