Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

13255834 .. 13256443

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCATTTGGGTGATTTCGGTACTAGTCTGAGTCTGTTCAGAGAGATGAAAGACTCTAACTTGGATTACGTCGTGCCGGATTTGTCTACATATTATAGCCTCATTCATGTGCTCTGTTTGGTGGGGAAGTTGAATGATGCACTTACTGTGTGGGAGGAATTGAAGGGCCCCGGCCATGAGCCCGACACAATTACCTATAGAATTCTTATTCAGGTGTGTTGTAAGTGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCGGATACCATTGTTTATAATTCTCTACTAGATGGGTTATTCAAGGCTAGGAAGGTTAATGATGGCTGCCAGTTATTTGAGAAAATGGTTCAGATTGGAGTGAGAGCCTCGACGTGCACGTATAATATTCTCATGGATGGTTTGTTGAGGAATGGAAGGGCAGATGCTGCGTACACGCTATTTTGTGACTTAAAGAAGAAGGGTCAGTTTGTTGATGGTGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

183

Amino Acids

20.75

Weight (kDa)

5.91

Isoelectric Point (pI)

14.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	2 cut(s)	22, 458
AgsI	TTSAA	3 cut(s)	133, 163, 328
AhlI	ACTAGT	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	399
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	2 cut(s)	114, 404
Alw44I	GTGCAC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	166, 172
ApaI	GGGCCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	3 cut(s)	268, 351, 452
ApoI	RAATTY	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	166, 167
AsuC2I	CCSGG	2 cut(s)	171, 287
AsuHPI	GGTGA	2 cut(s)	23, 515
BaeGI	GKGCMC	2 cut(s)	170, 404
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BanII	GRGCYC	2 cut(s)	170, 183
Bbv12I	GWGCWC	2 cut(s)	114, 404
BbvI	GCAGC	3 cut(s)	280, 338, 439
BccI	CCATC	4 cut(s)	311, 341, 416, 494
BciVI	GTATCC	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	171, 287
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	3 cut(s)	24, 314, 333
BfmI	CTRYAG	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	3 cut(s)	269, 352, 453
BlsI	GCNGC	3 cut(s)	270, 353, 454
Bme1390I	CCNGG	2 cut(s)	171, 287
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	166, 167
BmiI	GGNNCC	2 cut(s)	168, 169
BmrFI	CCNGG	2 cut(s)	171, 287
BmsI	GCATC	3 cut(s)	127, 232, 439
BpuMI	CCSGG	2 cut(s)	171, 287
BsaAI	YACGTR	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	2 cut(s)	170, 404
BseXI	GCAGC	3 cut(s)	280, 338, 439
BshFI	GGCC	2 cut(s)	168, 174
BsiHKAI	GWGCWC	2 cut(s)	114, 404
BsiSI	CCGG	3 cut(s)	77, 171, 287
BsnI	GGCC	2 cut(s)	168, 174
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	4 cut(s)	114, 170, 183, 404
BspANI	GGCC	2 cut(s)	168, 174
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	168, 169
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	148, 540
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	29, 249
BstF5I	GGATG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	169, 285
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	2 cut(s)	170, 404
BstV1I	GCAGC	3 cut(s)	280, 338, 439
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	168, 174
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	166, 167
Csp6I	GTAC	2 cut(s)	21, 457
CviAII	CATG	3 cut(s)	107, 176, 418
CviJI	RGCY	9 cut(s)	99, 168, 174, 181, 271, 332, 351, 392, 533
CviKI_1	RGCY	9 cut(s)	99, 168, 174, 181, 271, 332, 351, 392, 533
CviQI	GTAC	2 cut(s)	21, 457
DdeI	CTNAG	2 cut(s)	29, 249
EaeI	YGGCCR	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	170, 183
EcoO109I	RGGNCCY	2 cut(s)	166, 167
EcoRI	GAATTC	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	170, 183
FaeI	CATG	3 cut(s)	110, 179, 421
FaiI	YATR	9 cut(s)	91, 96, 108, 177, 198, 282, 303, 408, 419
FatI	CATG	3 cut(s)	106, 175, 417
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	269, 352, 453
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	2 cut(s)	170, 183
Fsp4HI	GCNGC	3 cut(s)	269, 352, 453
FspBI	CTAG	3 cut(s)	24, 314, 333
GluI	GCNGC	3 cut(s)	269, 352, 453
HaeIII	GGCC	2 cut(s)	168, 174
HapII	CCGG	3 cut(s)	77, 171, 287
Hin1II	CATG	3 cut(s)	110, 179, 421
HinfI	GANTC	2 cut(s)	31, 53
HpaII	CCGG	3 cut(s)	77, 171, 287
HphI	GGTGA	2 cut(s)	23, 515
Hpy166II	GTNNAC	3 cut(s)	87, 402, 459
Hpy188I	TCNGA	3 cut(s)	30, 41, 378
Hpy8I	GTNNAC	3 cut(s)	87, 402, 459
Hpy99I	CGWCG	2 cut(s)	74, 400
HpyAV	CCTTC	4 cut(s)	157, 331, 435, 478
HpyCH4III	ACNGT	2 cut(s)	148, 540
HpyCH4IV	ACGT	3 cut(s)	69, 398, 404
HpyCH4V	TGCA	4 cut(s)	4, 140, 268, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	29, 249
HpySE526I	ACGT	3 cut(s)	69, 398, 404
Hsp92II	CATG	3 cut(s)	110, 179, 421
LpnPI	CCDG	5 cut(s)	90, 184, 197, 300, 368
Lsp1109I	GCAGC	3 cut(s)	280, 338, 439
LweI	GCATC	3 cut(s)	127, 232, 439
MaeI	CTAG	3 cut(s)	24, 314, 333
MaeII	ACGT	3 cut(s)	69, 398, 404
MaeIII	GTNAC	1 cut(s)	470
MboII	GAAGA	2 cut(s)	493, 526
MhlI	GDGCHC	4 cut(s)	114, 170, 183, 404
MluCI	AATT	4 cut(s)	158, 189, 201, 304
MlyI	GAGTC	2 cut(s)	40, 47
MnlI	CCTC	5 cut(s)	110, 148, 403, 426, 523
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	342, 476, 547
MslI	CAYNNNNRTG	2 cut(s)	9, 107
MspI	CCGG	3 cut(s)	77, 171, 287
MspR9I	CCNGG	2 cut(s)	171, 287
MwoI	GCNNNNNNNGC	1 cut(s)	452
NciI	CCSGG	2 cut(s)	171, 287
NlaIII	CATG	3 cut(s)	110, 179, 421
NlaIV	GGNNCC	2 cut(s)	168, 169
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	270, 353, 454
PleI	GAGTC	2 cut(s)	39, 47
PpsI	GAGTC	2 cut(s)	39, 47
Ppu21I	YACGTR	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	168, 169
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	166, 167
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	22, 458
RsaNI	GTAC	2 cut(s)	21, 457
RseI	CAYNNNNRTG	2 cut(s)	9, 107
SaqAI	TTAA	3 cut(s)	342, 476, 547
SatI	GCNGC	3 cut(s)	269, 352, 453
Sau96I	GGNCC	2 cut(s)	166, 167
SchI	GAGTC	2 cut(s)	40, 47
ScrFI	CCNGG	2 cut(s)	171, 287
SduI	GDGCHC	4 cut(s)	114, 170, 183, 404
SetI	ASST	7 cut(s)	72, 197, 216, 273, 342, 401, 407
SfaNI	GCATC	3 cut(s)	127, 232, 439
SfcI	CTRYAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	9, 107
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	4 cut(s)	158, 189, 201, 304
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	3 cut(s)	24, 314, 333
StyD4I	CCNGG	2 cut(s)	169, 285
TaaI	ACNGT	2 cut(s)	148, 540
TaiI	ACGT	3 cut(s)	72, 401, 407
TaqI	TCGA	2 cut(s)	232, 395
TasI	AATT	4 cut(s)	158, 189, 201, 304
Tru1I	TTAA	3 cut(s)	342, 476, 547
Tru9I	TTAA	3 cut(s)	342, 476, 547
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	3 cut(s)	268, 351, 452
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	62, 95
VneI	GTGCAC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	3 cut(s)	24, 314, 333
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.