Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

13212777 .. 13213169

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACATGGTTAATACATTTTTGTCCTTATTCTTGGCCAAGGGAAAGCTGAGCATAGCATGCAAATTGTTTGAGATTTTCAGTGACCTTGGTGAAAACCCCGGCTACTTCAATGAGGCATGGGGTGTACTCAATGAAATGGGAGGAAATGTTTGCCCGCCATGTGATAATTCAGGCTTGGGGAAGATGGGTAGAGCGGATCTGGCAAGTTCTGTACTGGATAAGCTAATGAAGCAGGGTCGTTATCTTGACGTGGTTATGTACAGAACCTTGATTAATGCACTAGGGAAGGCTAGCAGGATTGATGAAGTAAACAAGCTCTTTAATCAGATGAAAGTAGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

116

Amino Acids

12.72

Weight (kDa)

6.26

Isoelectric Point (pI)

19.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	83 - 112	6e-06	PPR repeat
PPR_2	PF13041	84 - 112	8.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	2 cut(s)	158, 197
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	3 cut(s)	129, 216, 263
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	253
AluBI	AGCT	3 cut(s)	49, 226, 319
AluI	AGCT	3 cut(s)	49, 226, 319
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	36
AseI	ATTAAT	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	38
BccI	CCATC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	2 cut(s)	284, 294
BlpI	GCTNAGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	102
BmgBI	CACGTC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	102
BmtI	GCTAGC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	39, 88, 100
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	39, 88, 100
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	2 cut(s)	158, 197
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	3 cut(s)	39, 88, 100
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	2 cut(s)	39, 88
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	61, 158, 295
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 203, 232
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	61, 158, 295
Csp6I	GTAC	3 cut(s)	128, 215, 262
CviAII	CATG	4 cut(s)	7, 60, 120, 162
CviJI	RGCY	7 cut(s)	38, 49, 105, 177, 226, 293, 319
CviKI_1	RGCY	7 cut(s)	38, 49, 105, 177, 226, 293, 319
CviQI	GTAC	3 cut(s)	128, 215, 262
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	39, 88
EcoT14I	CCWWGG	2 cut(s)	39, 88
ErhI	CCWWGG	2 cut(s)	39, 88
FaeI	CATG	4 cut(s)	10, 63, 123, 165
FaiI	YATR	6 cut(s)	8, 56, 61, 121, 163, 260
FatI	CATG	4 cut(s)	6, 59, 119, 161
FauI	CCCGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	284, 294
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	4 cut(s)	10, 63, 123, 165
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	128, 313
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	128, 313
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	63, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 203, 232
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	10, 63, 123, 165
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	115, 159, 188, 203, 221, 283
MaeI	CTAG	2 cut(s)	284, 294
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	201
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	65, 169
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	2 cut(s)	109, 137
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	3 cut(s)	12, 276, 324
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	60, 203, 232
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	199
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	4 cut(s)	10, 63, 123, 165
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	3 cut(s)	129, 216, 263
RsaNI	GTAC	3 cut(s)	128, 215, 262
SaqAI	TTAA	3 cut(s)	12, 276, 324
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	6 cut(s)	51, 90, 228, 255, 272, 321
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	2 cut(s)	65, 169
SsiI	CCGC	2 cut(s)	158, 197
SspMI	CTAG	2 cut(s)	284, 294
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	39, 88
TaiI	ACGT	1 cut(s)	255
TasI	AATT	2 cut(s)	65, 169
TatI	WGTACW	3 cut(s)	127, 214, 261
Tru1I	TTAA	3 cut(s)	12, 276, 324
Tru9I	TTAA	3 cut(s)	12, 276, 324
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	4 cut(s)	150, 245, 321, 347
TspRI	CASTG	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	1 cut(s)	63
XspI	CTAG	2 cut(s)	284, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.