Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12920738 .. 12921130

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGACATGGTTAATACATTTTTGTCCTTATTCTTGGCCAAGGGAAAGCTGAGCATAGCATGCAAATTGTTTGAGATTTTCAGTGACCTTGGTGAAAACTCCGTGAGTTATACTTATAATTCCATGATGAGTTTGTTCGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTACTCAATGAAATGGGAGGAAATGTTTGCCCGCAATGTGATAATTCAGGCTTGGGGAAGATGGGTAGATCGGATCTGGCAAGTTCTGTCCTGGATAAGCTAATGAAGCAGGGTGGTTATCTTGACGTGGTTATGTACAGCACCTTGATTAATGCACTAGGGAAGGCTAGCAGGATTGATGAAGTAAACAAGCTCTTTAATCAGATGAAGGTAGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

131

Amino Acids

14.37

Weight (kDa)

6.26

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	37 - 63	1.8e-06	PPR repeat family
PPR	PF01535	37 - 63	1.4e-06	PPR repeat
PPR_1	PF12854	98 - 127	9.8e-07	PPR repeat
PPR_2	PF13041	99 - 127	2.8e-06	PPR repeat family
PPR	PF01535	101 - 127	3.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	2 cut(s)	174, 308
AgsI	TTSAA	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	49, 271, 364
AluI	AGCT	3 cut(s)	49, 271, 364
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	36
AseI	ATTAAT	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	38
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	2 cut(s)	329, 339
BlpI	GCTNAGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	263
BmtI	GCTAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	39, 88
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	39, 88
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	239, 244
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	39, 88
BssMI	GATC	2 cut(s)	239, 244
BssT1I	CCWWGG	2 cut(s)	39, 88
Bst2UI	CCWGG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	61, 203, 340
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	242, 247
BstMBI	GATC	2 cut(s)	239, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 277
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	61, 203, 340
Csp6I	GTAC	2 cut(s)	173, 307
CviAII	CATG	4 cut(s)	7, 60, 124, 165
CviJI	RGCY	7 cut(s)	38, 49, 150, 222, 271, 338, 364
CviKI_1	RGCY	7 cut(s)	38, 49, 150, 222, 271, 338, 364
CviQI	GTAC	2 cut(s)	173, 307
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	241, 246
DpnII	GATC	2 cut(s)	239, 244
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	39, 88
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	39, 88
ErhI	CCWWGG	2 cut(s)	39, 88
FaeI	CATG	4 cut(s)	10, 63, 127, 168
FaiI	YATR	8 cut(s)	8, 56, 61, 111, 117, 125, 166, 305
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	4 cut(s)	6, 59, 123, 164
FauI	CCCGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	329, 339
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	10, 63, 127, 168
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	173, 358
Hpy188I	TCNGA	2 cut(s)	244, 375
Hpy188III	TCNNGA	2 cut(s)	142, 293
Hpy8I	GTNNAC	2 cut(s)	173, 358
HpyAV	CCTTC	3 cut(s)	139, 328, 373
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	63, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 277
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	10, 63, 127, 168
Kzo9I	GATC	2 cut(s)	239, 244
LpnPI	CCDG	6 cut(s)	204, 233, 248, 266, 275, 328
MaeI	CTAG	2 cut(s)	329, 339
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	241, 246
MboI	GATC	2 cut(s)	239, 244
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	3 cut(s)	65, 118, 214
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	2 cut(s)	154, 182
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	3 cut(s)	12, 321, 369
Msp20I	TGGCCA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	60, 277
NdeII	GATC	2 cut(s)	239, 244
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	4 cut(s)	10, 63, 127, 168
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	174, 308
RsaNI	GTAC	2 cut(s)	173, 307
SaqAI	TTAA	3 cut(s)	12, 321, 369
Sau3AI	GATC	2 cut(s)	239, 244
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	7 cut(s)	51, 90, 273, 300, 317, 366, 384
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	3 cut(s)	65, 118, 214
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	329, 339
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	39, 88
TaiI	ACGT	1 cut(s)	300
TasI	AATT	3 cut(s)	65, 118, 214
TatI	WGTACW	2 cut(s)	172, 306
Tru1I	TTAA	3 cut(s)	12, 321, 369
Tru9I	TTAA	3 cut(s)	12, 321, 369
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	4 cut(s)	195, 290, 366, 392
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	321
XceI	RCATGY	1 cut(s)	63
XspI	CTAG	2 cut(s)	329, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.