Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

13111233 .. 13114444

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12360.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGTTTCATGCAATCATTGCTGAAAAAATATCGAAATTGAAACCATATTTTATAGATTACTTGGATTTCTTGATGAATATTGTGAACGGCTTTATAGTAAACAAGAGAAAGAGAGTGGTGCAGCTACATAAAGAGAAAAGATGGCTTGGGAATTATTGTGATGATATTTCTCCATACCTTGTGCCTTTTTTAAGAAAAATAATGGGGTTACTTGCCCTACAAGTAAAACAAAGTTGTGCCTTTTTGTTTTTTAAATACTCAAGTAATGATTTCTGTTGTGAAATTGGTGTGAATAAGTCAAAATTATATTGCTTAAATAGTAAAAGTTTGGTTTTTATTGTTTTTGTGTGTAAGCTTTTTACATGCATTAAAAGAGACGTATGCTTGTATCGTATAGGTAGTACAAAAAATGAAAAGCAGAAAGTAATAATCATGTTTTCCTCATTTGTCCCTCTTTACGTTCATTTCTCTTATCTGATACTAGTGAAGAAAATAAACAGAATAATACATGACTCCTGTTTCACTTCAATCTCTAACAACTCTAATTATATATATATAGATACGCATCATCTGATAATAACATGTTTCTCAATGCTCAAGGTAATCATTATCTTGAATTGGTTAAAGTTTTACAACTATATTTTTCTCTCAAGTGAGGCATATATATATGTATATATATATGAAACTTTTTTTTATTTTAGTTTTACATATATTAAAAATAAACAGTTAAATGAGTACCCTTCACGGGTAACCGTTTATTTATCTAAACGGTTACCCATAACCGAAACTATCAAATTTAAATGGCCCTATCCCCACCCACATCATAATCCCACCCACCACAAAAAAAAGTTAAAAATTAAAATATTTAAATTCTTTAGAAGAATAGATATTAGAGTGCTCATAAACCCAACTAAGCCTTCACTAATCACCAAGATCGTTCTTTCCGATTTTTATTCTAATCAAAATTCCAAAAATATGATTGAAATGAGGGATAAGCGAACTCATTCTCTATTGAAGTCCTTTCCTTCACCCTCCCTTGCATCTTACTCTAGAAACTACACTGATCCCTGCCCACAACCACCTCTCCTTCTCCTCTTCTCTGTCAGTCTCCCTTGTCTACTCTTTGACCACCCCCATGTCAAAGAACACAAAATACAGACACAAAGAAAAAAAAAAGAAAAAAAGAAAAACAAATCATTAATAAATCACCCATACGCAGCCACACAATTTGTTCTTACGATAACAAACACCAAATACAATTTCGTTTTGACAGACCCAAAATATCCACTCCTTCATCTGCATCTACACCACTCAAAAAAATCCCACACCATAATCAAATGCACTGTACCAAAGCAAAAATTAAAACCTACCTCAAAGGTTTTGTTGGTTAAATGTGAAAATTTGCAACTTTTATTACAAAACAGTGACATTGATTTAAGAGCCACTAGAGGATGCAGAGATAAGACAATGAGTAAAATTGATACAACCATTCTTTTTTTTTCTTTTCTTTCCATTGGTCTTTATATGTCATTTTTTACGAGGATAAAATTATTTGAAGTGAATTTGTTAGCACTCGGATTATATTGGATGAAATTGGAGGATTTGGGCCTGACTAACAACGAAAAAAGGAGTATCCAACCAAGTTTAAGCCCAACTCCAAGTAAAACCTGTCAAACAGTTAATACGAGGAGAATTATCTCGTTTCTTATGCTTATCCCCTTTCCCTGCCTCTCTTACATATTGTATTTTATGTTAAACCCTAATCATTCAAATAAAAGAGGGAAGAAAGGGAAGAAAAATTTGGAGGGAGAGAATCCTCCTCCCAGTGAATATAGTTTCTGCATCTGCTTCTCAGTTGTGAACTCAAAATCTCAGAATCTGTGTGTTTTTGGAAATGCAATGCGCCATGGAAGGCCTTTCCTGGTCAAAGACCACCACCACGACGGCGCCTCCCAGCTGGGAGACATACTGGCCACCATCACCAAGACCCTCTCAACCTCCGGCACCCGCAACCTCCCGGACCCCCACACCGTTCCGCTCTCCGAGCCCATCCTCTTCCAAATCCTCCGCGCCCAGTCCCTCCACCCCTCCAAAAAACTCGACTTTTTCAAATGGTGCTCTCTCACGCATAACATCAAACACTCGGCGCGCACCTACTCCCACATCCTCCGCACCGCCTCCCGCTCGGGATTCCTCCACGAGGTCCCTCAATTGCTTCACTCCATGAAGGAGGACGGCGTCGTGGTCGATTCCCAGACCTTCAAAGCCCTGCTCGACGCGTTTATCCGGTCCGGTAAGTTCGATTACGCGCTTGAAATTTTGGATATTATGGAAGATGTTGGTGCTGGGTTGAACACCGATATGTATAACTCGGTTCTTGTTGCTCTGGTTAGGAAAAACCGGGTGGGTTTGGCCATGGCCATTTTGTTTAAGCTTCTGGAGGGGGGGATTCGACCCAGGTGCCGAATTCGATTGCCTGCAATGAGTTGCTGGTTGCTCTTAGAAAATCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

839

Amino Acids

97.36

Weight (kDa)

9.75

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	1946, 2003, 2460
AccBSI	CCGCTC	2 cut(s)	2038, 2184
AccI	GTMKAC	1 cut(s)	1117
AccII	CGCG	4 cut(s)	2070, 2149, 2279, 2309
AciI	CCGC	6 cut(s)	2008, 2036, 2068, 2170, 2175, 2182
AclWI	GGATC	1 cut(s)	1058
AcoI	YGGCCR	3 cut(s)	1971, 2412, 2418
AcsI	RAATTY	8 cut(s)	794, 869, 964, 1399, 1561, 1798, 2316, 2466
AcyI	GRCGYC	2 cut(s)	1947, 2238
AfaI	GTAC	3 cut(s)	403, 737, 1347
AfiI	CCNNNNNNNGG	2 cut(s)	745, 2200
AflIII	ACRYGT	2 cut(s)	581, 2277
AhlI	ACTAGT	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	1920, 2456
AjuI	GAANNNNNNNTTGG	6 cut(s)	901, 933, 1244, 1276, 1784, 1816
AluBI	AGCT	4 cut(s)	124, 355, 1957, 2434
AluI	AGCT	4 cut(s)	124, 355, 1957, 2434
Alw21I	GWGCWC	2 cut(s)	900, 2120
Alw26I	GTCTC	3 cut(s)	369, 1112, 1956
AlwI	GGATC	1 cut(s)	1058
AlwNI	CAGNNNCTG	1 cut(s)	1879
Ama87I	CYCGRG	1 cut(s)	2185
AoxI	GGCC	6 cut(s)	803, 1606, 1913, 1971, 2412, 2418
ApeKI	GCWGC	2 cut(s)	121, 1217
ApoI	RAATTY	8 cut(s)	794, 869, 964, 1399, 1561, 1798, 2316, 2466
AseI	ATTAAT	1 cut(s)	1199
Asp700I	GAANNNNTTC	1 cut(s)	1003
AspLEI	GCGC	6 cut(s)	1905, 1949, 2072, 2149, 2151, 2311
AspS9I	GGNCC	5 cut(s)	804, 1606, 2020, 2203, 2289
AsuC2I	CCSGG	2 cut(s)	2018, 2402
AsuHPI	GGTGA	4 cut(s)	919, 1020, 1199, 1972
AvaI	CYCGRG	1 cut(s)	2185
AvaII	GGWCC	3 cut(s)	2020, 2203, 2289
BalI	TGGCCA	3 cut(s)	1973, 2414, 2420
BanI	GGYRCC	3 cut(s)	1946, 2003, 2460
BanII	GRGCYC	1 cut(s)	2049
BauI	CACGAG	1 cut(s)	2198
Bbv12I	GWGCWC	2 cut(s)	900, 2120
BbvI	GCAGC	2 cut(s)	133, 1229
BccI	CCATC	3 cut(s)	135, 1985, 2057
BceAI	ACGGC	3 cut(s)	103, 1960, 2251
BcgI	CGANNNNNNTGC	2 cut(s)	2442, 2476
BciT130I	CCWGG	2 cut(s)	1922, 2458
BciVI	GTATCC	1 cut(s)	1643
BcnI	CCSGG	2 cut(s)	2018, 2402
BcoDI	GTCTC	3 cut(s)	369, 1112, 1956
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	3 cut(s)	482, 1050, 1446
BfoI	RGCGCY	1 cut(s)	1950
BfuI	GTATCC	1 cut(s)	1643
BisI	GCNGC	2 cut(s)	122, 1218
BlsI	GCNGC	2 cut(s)	123, 1219
Bme1390I	CCNGG	4 cut(s)	1922, 2018, 2402, 2458
Bme18I	GGWCC	3 cut(s)	2020, 2203, 2289
BmeT110I	CYCGRG	1 cut(s)	2185
BmgT120I	GGNCC	5 cut(s)	804, 1606, 2020, 2203, 2289
BmiI	GGNNCC	5 cut(s)	1948, 2005, 2022, 2205, 2462
BmrFI	CCNGG	4 cut(s)	1922, 2018, 2402, 2458
BmrI	ACTGGG	2 cut(s)	1818, 2068
BmsI	GCATC	5 cut(s)	574, 1049, 1309, 1442, 1851
BmuI	ACTGGG	2 cut(s)	1818, 2068
BpmI	CTGGAG	1 cut(s)	2459
BpuEI	CTTGAG	3 cut(s)	244, 581, 634
BpuMI	CCSGG	2 cut(s)	2018, 2402
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	2 cut(s)	1947, 2238
BsaJI	CCNNGG	3 cut(s)	1906, 2415, 2456
BsaWI	WCCGGW	2 cut(s)	2286, 2291
BsaXI	ACNNNNNCTCC	4 cut(s)	1068, 1098, 1934, 1964
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 2200
Bse1I	ACTGG	3 cut(s)	1824, 1974, 2074
Bse3DI	GCAATG	3 cut(s)	15, 1905, 2487
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	1922, 2458
BseDI	CCNNGG	3 cut(s)	1906, 2415, 2456
BseGI	GGATG	4 cut(s)	1457, 1593, 2049, 2163
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	2 cut(s)	745, 2200
BseMI	GCAATG	3 cut(s)	15, 1905, 2487
BseMII	CTCAG	2 cut(s)	1866, 1886
BseNI	ACTGG	3 cut(s)	1824, 1974, 2074
BsePI	GCGCGC	1 cut(s)	2147
BseRI	GAGGAG	3 cut(s)	1082, 1702, 1809
BseXI	GCAGC	2 cut(s)	133, 1229
BseYI	CCCAGC	3 cut(s)	1953, 1957, 2345
BsgI	GTGCAG	1 cut(s)	140
Bsh1236I	CGCG	4 cut(s)	2070, 2149, 2279, 2309
BshFI	GGCC	6 cut(s)	805, 1608, 1915, 1973, 2414, 2420
BshNI	GGYRCC	3 cut(s)	1946, 2003, 2460
BsiHKAI	GWGCWC	2 cut(s)	900, 2120
BsiHKCI	CYCGRG	1 cut(s)	2185
BsiSI	CCGG	5 cut(s)	2001, 2018, 2287, 2292, 2401
BslFI	GGGAC	3 cut(s)	434, 2062, 2189
BslI	CCNNNNNNNGG	2 cut(s)	745, 2200
BsmAI	GTCTC	3 cut(s)	369, 1112, 1956
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	3 cut(s)	434, 2062, 2189
BsnI	GGCC	6 cut(s)	805, 1608, 1915, 1973, 2414, 2420
BsoBI	CYCGRG	1 cut(s)	2185
Bsp1286I	GDGCHC	3 cut(s)	900, 2049, 2120
Bsp143I	GATC	2 cut(s)	933, 1063
Bsp19I	CCATGG	2 cut(s)	1906, 2415
BspACI	CCGC	6 cut(s)	2008, 2036, 2068, 2170, 2175, 2182
BspANI	GGCC	6 cut(s)	805, 1608, 1915, 1973, 2414, 2420
BspCNI	CTCAG	2 cut(s)	1865, 1885
BspFNI	CGCG	4 cut(s)	2070, 2149, 2279, 2309
BspLI	GGNNCC	5 cut(s)	1948, 2005, 2022, 2205, 2462
BspPI	GGATC	1 cut(s)	1058
BspT107I	GGYRCC	3 cut(s)	1946, 2003, 2460
BsrBI	CCGCTC	2 cut(s)	2038, 2184
BsrDI	GCAATG	3 cut(s)	15, 1905, 2487
BsrI	ACTGG	3 cut(s)	1824, 1974, 2074
BssECI	CCNNGG	3 cut(s)	1906, 2415, 2456
BssHII	GCGCGC	1 cut(s)	2147
BssMI	GATC	2 cut(s)	933, 1063
BssNI	GRCGYC	2 cut(s)	1947, 2238
BssSI	CACGAG	1 cut(s)	2198
BssT1I	CCWWGG	2 cut(s)	1906, 2415
Bst2BI	CACGAG	1 cut(s)	2198
Bst2UI	CCWGG	2 cut(s)	1922, 2458
Bst4CI	ACNGT	7 cut(s)	726, 754, 771, 1345, 1424, 1678, 2032
Bst6I	CTCTTC	2 cut(s)	1100, 2060
BstACI	GRCGYC	2 cut(s)	1947, 2238
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	2149, 2478
BstDEI	CTNAG	4 cut(s)	912, 1852, 1872, 2500
BstDSI	CCRYGG	2 cut(s)	1906, 2415
BstEII	GGTNACC	2 cut(s)	748, 771
BstENI	CCTNNNNNAGG	1 cut(s)	2198
BstF5I	GGATG	4 cut(s)	1457, 1593, 2049, 2163
BstFNI	CGCG	4 cut(s)	2070, 2149, 2279, 2309
BstH2I	RGCGCY	1 cut(s)	1950
BstHHI	GCGC	6 cut(s)	1905, 1949, 2072, 2149, 2151, 2311
BstKTI	GATC	2 cut(s)	936, 1066
BstMAI	GTCTC	3 cut(s)	369, 1112, 1956
BstMBI	GATC	2 cut(s)	933, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 2044
BstNI	CCWGG	2 cut(s)	1922, 2458
BstNSI	RCATGY	2 cut(s)	366, 585
BstPI	GGTNACC	2 cut(s)	748, 771
BstSCI	CCNGG	4 cut(s)	1920, 2016, 2400, 2456
BstUI	CGCG	4 cut(s)	2070, 2149, 2279, 2309
BstV1I	GCAGC	2 cut(s)	133, 1229
BsuI	GTATCC	1 cut(s)	1643
BsuRI	GGCC	6 cut(s)	805, 1608, 1915, 1973, 2414, 2420
BtgI	CCRYGG	2 cut(s)	1906, 2415
BtsCI	GGATG	4 cut(s)	1457, 1593, 2049, 2163
BtsIMutI	CAGTG	4 cut(s)	1059, 1341, 1429, 1831
Cac8I	GCNNGC	2 cut(s)	2149, 2478
CaiI	CAGNNNCTG	1 cut(s)	1879
CfoI	GCGC	6 cut(s)	1905, 1949, 2072, 2149, 2151, 2311
Cfr13I	GGNCC	5 cut(s)	804, 1606, 2020, 2203, 2289
CpoI	CGGWCCG	1 cut(s)	2289
CseI	GACGC	2 cut(s)	2227, 2285
Csp6I	GTAC	3 cut(s)	402, 736, 1346
CspCI	CAANNNNNGTGG	2 cut(s)	1210, 1245
CspI	CGGWCCG	1 cut(s)	2289
CviAII	CATG	9 cut(s)	8, 363, 433, 509, 582, 1136, 1907, 2224, 2416
CviQI	GTAC	3 cut(s)	402, 736, 1346
DdeI	CTNAG	4 cut(s)	912, 1852, 1872, 2500
DinI	GGCGCC	1 cut(s)	1948
DpnI	GATC	2 cut(s)	935, 1065
DpnII	GATC	2 cut(s)	933, 1063
DraI	TTTAAA	3 cut(s)	253, 799, 868
EaeI	YGGCCR	3 cut(s)	1971, 2412, 2418
Eam1104I	CTCTTC	2 cut(s)	1100, 2060
EarI	CTCTTC	2 cut(s)	1100, 2060
Eco130I	CCWWGG	2 cut(s)	1906, 2415
Eco147I	AGGCCT	1 cut(s)	1915
Eco24I	GRGCYC	1 cut(s)	2049
Eco47I	GGWCC	3 cut(s)	2020, 2203, 2289
Eco88I	CYCGRG	1 cut(s)	2185
Eco91I	GGTNACC	2 cut(s)	748, 771
EcoNI	CCTNNNNNAGG	1 cut(s)	2198
EcoO109I	RGGNCCY	1 cut(s)	2203
EcoO65I	GGTNACC	2 cut(s)	748, 771
EcoRI	GAATTC	1 cut(s)	2466
EcoRII	CCWGG	2 cut(s)	1920, 2456
EcoT14I	CCWWGG	2 cut(s)	1906, 2415
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	2049
EgeI	GGCGCC	1 cut(s)	1948
EheI	GGCGCC	1 cut(s)	1948
ErhI	CCWWGG	2 cut(s)	1906, 2415
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	9 cut(s)	11, 366, 436, 512, 585, 1139, 1910, 2227, 2419
FaqI	GGGAC	3 cut(s)	434, 2062, 2189
FatI	CATG	9 cut(s)	7, 362, 432, 508, 581, 1135, 1906, 2223, 2415
FauI	CCCGC	2 cut(s)	2015, 2189
FblI	GTMKAC	1 cut(s)	1117
Fnu4HI	GCNGC	2 cut(s)	122, 1218
FokI	GGATG	4 cut(s)	1464, 1600, 2036, 2150
FriOI	GRGCYC	1 cut(s)	2049
Fsp4HI	GCNGC	2 cut(s)	122, 1218
FspBI	CTAG	3 cut(s)	482, 1050, 1446
GlaI	GCGC	6 cut(s)	1904, 1948, 2071, 2148, 2150, 2310
GluI	GCNGC	2 cut(s)	122, 1218
GsaI	CCCAGC	3 cut(s)	1957, 1961, 2349
GsuI	CTGGAG	1 cut(s)	2459
HaeII	RGCGCY	1 cut(s)	1950
HaeIII	GGCC	6 cut(s)	805, 1608, 1915, 1973, 2414, 2420
HapII	CCGG	5 cut(s)	2001, 2018, 2287, 2292, 2401
HgaI	GACGC	2 cut(s)	2227, 2285
HhaI	GCGC	6 cut(s)	1905, 1949, 2072, 2149, 2151, 2311
Hin1I	GRCGYC	2 cut(s)	1947, 2238
Hin1II	CATG	9 cut(s)	11, 366, 436, 512, 585, 1139, 1910, 2227, 2419
Hin6I	GCGC	6 cut(s)	1903, 1947, 2070, 2147, 2149, 2309
HinP1I	GCGC	6 cut(s)	1903, 1947, 2070, 2147, 2149, 2309
HindIII	AAGCTT	2 cut(s)	353, 2432
HinfI	GANTC	6 cut(s)	512, 1813, 1876, 2190, 2249, 2449
HpaII	CCGG	5 cut(s)	2001, 2018, 2287, 2292, 2401
HphI	GGTGA	4 cut(s)	919, 1020, 1199, 1972
Hpy166II	GTNNAC	4 cut(s)	85, 100, 1118, 1861
Hpy188I	TCNGA	7 cut(s)	477, 573, 946, 1577, 1875, 2044, 2511
Hpy188III	TCNNGA	5 cut(s)	70, 613, 1050, 2187, 2438
Hpy8I	GTNNAC	4 cut(s)	85, 100, 1118, 1861
Hpy99I	CGWCG	3 cut(s)	1946, 2243, 2279
HpyAV	CCTTC	8 cut(s)	750, 927, 1035, 1097, 1301, 1905, 2221, 2269
HpyCH4III	ACNGT	7 cut(s)	726, 754, 771, 1345, 1424, 1678, 2032
HpyCH4IV	ACGT	2 cut(s)	378, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 2044
HpyF3I	CTNAG	4 cut(s)	912, 1852, 1872, 2500
HpySE526I	ACGT	2 cut(s)	378, 459
Hsp92I	GRCGYC	2 cut(s)	1947, 2238
Hsp92II	CATG	9 cut(s)	11, 366, 436, 512, 585, 1139, 1910, 2227, 2419
HspAI	GCGC	6 cut(s)	1903, 1947, 2070, 2147, 2149, 2309
KasI	GGCGCC	1 cut(s)	1946
Kzo9I	GATC	2 cut(s)	933, 1063
Lsp1109I	GCAGC	2 cut(s)	133, 1229
LweI	GCATC	5 cut(s)	574, 1049, 1309, 1442, 1851
MaeI	CTAG	3 cut(s)	482, 1050, 1446
MaeII	ACGT	2 cut(s)	378, 459
MaeIII	GTNAC	4 cut(s)	207, 748, 771, 1424
MalI	GATC	2 cut(s)	935, 1065
MbiI	CCGCTC	2 cut(s)	2038, 2184
MboI	GATC	2 cut(s)	933, 1063
MboII	GAAGA	7 cut(s)	499, 891, 1087, 1795, 1804, 2047, 2345
MfeI	CAATTG	1 cut(s)	2210
MhlI	GDGCHC	3 cut(s)	900, 2049, 2120
MlsI	TGGCCA	3 cut(s)	1973, 2414, 2420
MluI	ACGCGT	1 cut(s)	2277
MluNI	TGGCCA	3 cut(s)	1973, 2414, 2420
Mly113I	GGCGCC	1 cut(s)	1947
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	1660
Mox20I	TGGCCA	3 cut(s)	1973, 2414, 2420
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	1003
MscI	TGGCCA	3 cut(s)	1973, 2414, 2420
MslI	CAYNNNNRTG	2 cut(s)	1134, 2360
Msp20I	TGGCCA	3 cut(s)	1973, 2414, 2420
MspA1I	CMGCKG	1 cut(s)	1957
MspI	CCGG	5 cut(s)	2001, 2018, 2287, 2292, 2401
MspR9I	CCNGG	4 cut(s)	1922, 2018, 2402, 2458
MunI	CAATTG	1 cut(s)	2210
MvaI	CCWGG	2 cut(s)	1922, 2458
MvnI	CGCG	4 cut(s)	2070, 2149, 2279, 2309
MwoI	GCNNNNNNNGC	2 cut(s)	17, 2044
NarI	GGCGCC	1 cut(s)	1947
NciI	CCSGG	2 cut(s)	2018, 2402
NcoI	CCATGG	2 cut(s)	1906, 2415
NdeII	GATC	2 cut(s)	933, 1063
NlaIII	CATG	9 cut(s)	11, 366, 436, 512, 585, 1139, 1910, 2227, 2419
NlaIV	GGNNCC	5 cut(s)	1948, 2005, 2022, 2205, 2462
NmeAIII	GCCGAG	1 cut(s)	2123
NmuCI	GTSAC	1 cut(s)	1424
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	2 cut(s)	366, 585
PauI	GCGCGC	1 cut(s)	2147
PceI	AGGCCT	1 cut(s)	1915
PciI	ACATGT	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	1003
PfeI	GAWTC	5 cut(s)	1813, 1876, 2190, 2249, 2449
PflFI	GACNNNGTC	1 cut(s)	2237
PfoI	TCCNGGA	1 cut(s)	2016
PkrI	GCNGC	2 cut(s)	123, 1219
PleI	GAGTC	1 cut(s)	506
PluTI	GGCGCC	1 cut(s)	1950
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	2203
PscI	ACATGT	1 cut(s)	581
PshBI	ATTAAT	1 cut(s)	1199
Psp5II	RGGWCCY	1 cut(s)	2203
Psp6I	CCWGG	2 cut(s)	1920, 2456
PspEI	GGTNACC	2 cut(s)	748, 771
PspFI	CCCAGC	3 cut(s)	1953, 1957, 2345
PspGI	CCWGG	2 cut(s)	1920, 2456
PspN4I	GGNNCC	5 cut(s)	1948, 2005, 2022, 2205, 2462
PspPI	GGNCC	5 cut(s)	804, 1606, 2020, 2203, 2289
PspPPI	RGGWCCY	1 cut(s)	2203
PsrI	GAACNNNNNNTAC	2 cut(s)	1137, 1169
PstNI	CAGNNNCTG	1 cut(s)	1879
PsyI	GACNNNGTC	1 cut(s)	2237
PteI	GCGCGC	1 cut(s)	2147
PvuII	CAGCTG	1 cut(s)	1957
RsaI	GTAC	3 cut(s)	403, 737, 1347
RsaNI	GTAC	3 cut(s)	402, 736, 1346
RseI	CAYNNNNRTG	2 cut(s)	1134, 2360
Rsr2I	CGGWCCG	1 cut(s)	2289
RsrII	CGGWCCG	1 cut(s)	2289
SatI	GCNGC	2 cut(s)	122, 1218
Sau3AI	GATC	2 cut(s)	933, 1063
Sau96I	GGNCC	5 cut(s)	804, 1606, 2020, 2203, 2289
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	4 cut(s)	1922, 2018, 2402, 2458
SduI	GDGCHC	3 cut(s)	900, 2049, 2120
SfaNI	GCATC	5 cut(s)	574, 1049, 1309, 1442, 1851
SfoI	GGCGCC	1 cut(s)	1948
SinI	GGWCC	3 cut(s)	2020, 2203, 2289
SmiI	ATTTAAAT	2 cut(s)	799, 868
SmiMI	CAYNNNNRTG	2 cut(s)	1134, 2360
SmlI	CTYRAG	3 cut(s)	259, 596, 649
SmoI	CTYRAG	3 cut(s)	259, 596, 649
SpeI	ACTAGT	1 cut(s)	481
SseBI	AGGCCT	1 cut(s)	1915
SsiI	CCGC	6 cut(s)	2008, 2036, 2068, 2170, 2175, 2182
SspDI	GGCGCC	1 cut(s)	1946
SspI	AATATT	2 cut(s)	79, 864
SspMI	CTAG	3 cut(s)	482, 1050, 1446
StuI	AGGCCT	1 cut(s)	1915
StyD4I	CCNGG	4 cut(s)	1920, 2016, 2400, 2456
StyI	CCWWGG	2 cut(s)	1906, 2415
SwaI	ATTTAAAT	2 cut(s)	799, 868
TaaI	ACNGT	7 cut(s)	726, 754, 771, 1345, 1424, 1678, 2032
TaiI	ACGT	2 cut(s)	381, 462
TaqI	TCGA	7 cut(s)	32, 2100, 2247, 2274, 2301, 2452, 2470
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	5 cut(s)	1813, 1876, 2190, 2249, 2449
TscAI	CASTG	4 cut(s)	1066, 1348, 1429, 1831
TseFI	GTSAC	1 cut(s)	1424
TseI	GCWGC	2 cut(s)	121, 1217
Tsp45I	GTSAC	1 cut(s)	1424
TspDTI	ATGAA	7 cut(s)	89, 426, 452, 696, 1283, 1604, 2240
TspRI	CASTG	4 cut(s)	1066, 1348, 1429, 1831
Tth111I	GACNNNGTC	1 cut(s)	2237
VpaK11BI	GGWCC	3 cut(s)	2020, 2203, 2289
VspI	ATTAAT	1 cut(s)	1199
XagI	CCTNNNNNAGG	1 cut(s)	2198
XapI	RAATTY	8 cut(s)	794, 869, 964, 1399, 1561, 1798, 2316, 2466
XbaI	TCTAGA	1 cut(s)	1049
XceI	RCATGY	2 cut(s)	366, 585
XmiI	GTMKAC	1 cut(s)	1117
XmnI	GAANNNNTTC	1 cut(s)	1003
XspI	CTAG	3 cut(s)	482, 1050, 1446
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.