Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12836236 .. 12836847

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTTAATACCTTTTTGTCCTTATTCTTGGCCAAGGGAAAGCTGAGCATAGCATGCAAATTGTTTGAGATTTTCAGTGATCTTGGTGAAAATCCTGTGAGTTATACTTATAATTCCATGATGAGTTCGTTCGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTACTCAATGAAATGGGAGAAAAGGTCTGCCCCACAGACATAGCTACATACAATGTGATAATTCAAGGCTTGGGGAAGATGGGTAGAGCGGATCTAGCGAGTTCTGTCCTGGATAAGCTAATTAAGCAGGGTGGTTATCTTGACGTGGTTATGTACAACACCTTGATTAATGCACTAGGAAAGGCTAGCAGGATTGATGAAGTAAACAAGCTCTTTGAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTTAATACACTTATTGAAGTTCATAGCAAAGCAGGTCGGCTAAAAGATGCATATAAGTTTTTGAAAATGATGCTTGATGCAGGCTGCACCCCGAACCATGTTACTGACACGACTTTAGATTTTCTGGGCAAGGAGATTGAGAAAATGAGGTACCAGAAGGCATCCATGGTGCGCAATAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

204

Amino Acids

22.67

Weight (kDa)

8.31

Isoelectric Point (pI)

26.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	33 - 81	1.1e-13	PPR repeat family
PPR	PF01535	35 - 63	4.4e-07	PPR repeat
TPR_24	PF23276	80 - 142	6.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	90 - 149	3.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	102 - 131	3.1e-07	PPR repeat
PPR_2	PF13041	103 - 146	1e-15	PPR repeat family
PPR	PF01535	105 - 135	1.5e-08	PPR repeat
PPR_3	PF13812	125 - 176	2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	134 - 165	8.5e-11	PPR repeat
PPR_2	PF13041	137 - 180	9.2e-13	PPR repeat family
PPR	PF01535	140 - 170	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
Acc16I	TGCGCA	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	446
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	254
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	3 cut(s)	168, 320, 575
AgsI	TTSAA	4 cut(s)	151, 230, 440, 487
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	4 cut(s)	43, 209, 283, 376
AluI	AGCT	4 cut(s)	43, 209, 283, 376
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	507
AseI	ATTAAT	1 cut(s)	333
Asp718I	GGTACC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	275
BfaI	CTAG	3 cut(s)	260, 341, 351
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	4 cut(s)	460, 483, 490, 593
BmtI	GCTAGC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	33, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	33, 588
BseGI	GGATG	2 cut(s)	584, 610
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	79, 256
Bsp1720I	GCTNAGC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	446
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	573
BsrBI	CCGCTC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	33, 588
BssMI	GATC	2 cut(s)	79, 256
BssT1I	CCWWGG	2 cut(s)	33, 588
Bst2UI	CCWGG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	55, 352, 505
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	584, 610
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	2 cut(s)	82, 259
BstMBI	GATC	2 cut(s)	79, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 260, 289, 382
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	588
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	584, 610
BtsIMutI	CAGTG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	55, 352, 505
CfoI	GCGC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	167, 319, 574
CviAII	CATG	5 cut(s)	54, 118, 159, 521, 589
CviQI	GTAC	3 cut(s)	167, 319, 574
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	81, 258
DpnII	GATC	2 cut(s)	79, 256
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	33, 588
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	33, 588
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	2 cut(s)	33, 588
FaeI	CATG	5 cut(s)	57, 121, 162, 524, 592
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	5 cut(s)	53, 117, 158, 520, 588
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	3 cut(s)	260, 341, 351
FspI	TGCGCA	1 cut(s)	596
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	57, 121, 162, 524, 592
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	167, 370
Hpy188III	TCNNGA	3 cut(s)	136, 305, 410
Hpy8I	GTNNAC	2 cut(s)	167, 370
HpyAV	CCTTC	2 cut(s)	133, 574
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	5 cut(s)	57, 338, 473, 503, 510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 260, 289, 382
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	57, 121, 162, 524, 592
HspAI	GCGC	1 cut(s)	595
KpnI	GGTACC	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	79, 256
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	4 cut(s)	460, 483, 490, 593
MaeI	CTAG	3 cut(s)	260, 341, 351
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	418, 523
MalI	GATC	2 cut(s)	81, 258
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	2 cut(s)	79, 256
MboII	GAAGA	2 cut(s)	253, 403
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	4 cut(s)	59, 112, 225, 285
MluNI	TGGCCA	1 cut(s)	32
MnlI	CCTC	2 cut(s)	148, 564
Mox20I	TGGCCA	1 cut(s)	32
Mph1103I	ATGCAT	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	4 cut(s)	6, 288, 333, 426
Msp20I	TGGCCA	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	4 cut(s)	54, 260, 289, 382
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	2 cut(s)	79, 256
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	57, 121, 162, 524, 592
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	418
NsbI	TGCGCA	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	3 cut(s)	168, 320, 575
RsaNI	GTAC	3 cut(s)	167, 319, 574
SaqAI	TTAA	4 cut(s)	6, 288, 333, 426
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	2 cut(s)	79, 256
ScrFI	CCNGG	1 cut(s)	275
SfaNI	GCATC	4 cut(s)	460, 483, 490, 593
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	59, 112, 225, 285
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	260, 341, 351
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	2 cut(s)	33, 588
TaiI	ACGT	1 cut(s)	312
TasI	AATT	4 cut(s)	59, 112, 225, 285
TatI	WGTACW	2 cut(s)	166, 318
Tru1I	TTAA	4 cut(s)	6, 288, 333, 426
Tru9I	TTAA	4 cut(s)	6, 288, 333, 426
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	4 cut(s)	189, 378, 404, 434
TspRI	CASTG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	3 cut(s)	260, 341, 351
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.