Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12827402 .. 12828450

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCTAACTGTAATAGTTTTGTTTACAGCTCAGCCCAAACACGTAGTAGTATTTTAACTCTACTGAATTATTTTGGAATATTTTGGGTGAAATGTGAGGAGAGGCCCAAACAACAATCACCCCAAAATCTGGGCCTTCAACAAGAAAAGGAGTATAGTTTCTGCATCTTCTTCTCAGTTAATCCGTATGTTTTTGGAAATGCAATGCGCCATGGGAGGCCTTTCCTGGTCAAAGACCGCCACCACCACGGCGCCTCCCAGCTGGGAGACATACTCCTGGTGGCCGCCATCACCAATACCCTCTCAACCTCCGGTACCCGCAACCTCCCGGAACCCCACACCCTCCCGCTTTCCGAGCCCCTACTCCTCCAAATCCTCCGCGCCCAGTTCCTCCACCCCTCCAGAAAACTCGACTTCTTCATATGGTGCTCTCTCACGCATAACATCAAACACTCGGCGCGCACCTACTCCCACATCCTGCGCACCGCCTCCCGCTCTGGATTCCTCCACGAGGTCCCTCAATTGCTTCACTCCATGAAGGAGGACGGCGTCGTGGTCGATTCCCGGACCTTCAAAGCCCTGCTCGACGCGTTTATCCGGTCCAATGTTGGTGCTGGGTTGAACACCGATATTTATAACTCGGTTCTTGTTACTCTGGTTAGGAAAAACCAGGTGGGTTTGGCCATGGCCATTTTGCTTAAGCTTCTGGAGGGAGGGGATTCTTCCCAGGTGCCGAATTCGATTGCCTGCAACGAGTTACTGGTTGCTCTTAAAAAATCTGACATGAGGGTTGAGTTTAAGCAAGTTTTTGATGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

274

Amino Acids

30.73

Weight (kDa)

9.11

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc16I	TGCGCA	1 cut(s)	482
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	3 cut(s)	251, 314, 730
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	495
AccII	CGCG	3 cut(s)	381, 460, 590
AciI	CCGC	7 cut(s)	238, 285, 319, 347, 379, 486, 493
AcoI	YGGCCR	3 cut(s)	282, 681, 687
AcsI	RAATTY	1 cut(s)	736
AcyI	GRCGYC	2 cut(s)	252, 549
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	130, 511
AflII	CTTAAG	1 cut(s)	698
AflIII	ACRYGT	2 cut(s)	41, 588
AgsI	TTSAA	3 cut(s)	140, 574, 622
AjnI	CCWGG	4 cut(s)	225, 276, 669, 726
AluBI	AGCT	3 cut(s)	30, 262, 703
AluI	AGCT	3 cut(s)	30, 262, 703
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	261
AoxI	GGCC	6 cut(s)	104, 133, 218, 282, 681, 687
ApoI	RAATTY	1 cut(s)	736
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	6 cut(s)	210, 254, 383, 460, 462, 483
AspS9I	GGNCC	5 cut(s)	105, 133, 514, 567, 600
AsuC2I	CCSGG	2 cut(s)	329, 565
AsuHPI	GGTGA	3 cut(s)	100, 111, 283
AvaII	GGWCC	3 cut(s)	514, 567, 600
BalI	TGGCCA	2 cut(s)	683, 689
BanI	GGYRCC	3 cut(s)	251, 314, 730
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	431
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	2 cut(s)	265, 562
BciT130I	CCWGG	4 cut(s)	227, 278, 671, 728
BcnI	CCSGG	2 cut(s)	329, 565
BcoDI	GTCTC	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	698
BisI	GCNGC	1 cut(s)	285
BlpI	GCTNAGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	6 cut(s)	227, 278, 329, 565, 671, 728
Bme18I	GGWCC	3 cut(s)	514, 567, 600
BmgT120I	GGNCC	5 cut(s)	105, 133, 514, 567, 600
BmiI	GGNNCC	5 cut(s)	253, 316, 333, 516, 732
BmrFI	CCNGG	6 cut(s)	227, 278, 329, 565, 671, 728
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	2 cut(s)	385, 728
Bpu1102I	GCTNAGC	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	329, 565
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	252, 549
BsaJI	CCNNGG	4 cut(s)	211, 247, 684, 726
BsaWI	WCCGGW	2 cut(s)	311, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 511
Bse1I	ACTGG	2 cut(s)	385, 765
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	4 cut(s)	227, 278, 671, 728
BseDI	CCNNGG	4 cut(s)	211, 247, 684, 726
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	130, 511
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	45, 189
BseNI	ACTGG	2 cut(s)	385, 765
BsePI	GCGCGC	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	113, 356
BseYI	CCCAGC	3 cut(s)	258, 262, 614
Bsh1236I	CGCG	3 cut(s)	381, 460, 590
BshFI	GGCC	6 cut(s)	106, 135, 220, 284, 683, 689
BshNI	GGYRCC	3 cut(s)	251, 314, 730
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	4 cut(s)	312, 329, 565, 598
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	130, 511
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	6 cut(s)	106, 135, 220, 284, 683, 689
Bsp1286I	GDGCHC	2 cut(s)	360, 431
Bsp1720I	GCTNAGC	1 cut(s)	31
Bsp19I	CCATGG	2 cut(s)	211, 684
BspACI	CCGC	7 cut(s)	238, 285, 319, 347, 379, 486, 493
BspANI	GGCC	6 cut(s)	106, 135, 220, 284, 683, 689
BspCNI	CTCAG	2 cut(s)	44, 188
BspFNI	CGCG	3 cut(s)	381, 460, 590
BspLI	GGNNCC	5 cut(s)	253, 316, 333, 516, 732
BspT107I	GGYRCC	3 cut(s)	251, 314, 730
BspTI	CTTAAG	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	385, 765
BssECI	CCNNGG	4 cut(s)	211, 247, 684, 726
BssHII	GCGCGC	1 cut(s)	458
BssNI	GRCGYC	2 cut(s)	252, 549
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	211, 684
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	4 cut(s)	227, 278, 671, 728
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	2 cut(s)	252, 549
BstAFI	CTTAAG	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	460, 748
BstDEI	CTNAG	2 cut(s)	31, 175
BstDSI	CCRYGG	3 cut(s)	211, 247, 684
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	3 cut(s)	381, 460, 590
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	6 cut(s)	210, 254, 383, 460, 462, 483
BstMAI	GTCTC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	4 cut(s)	227, 278, 671, 728
BstSCI	CCNGG	6 cut(s)	225, 276, 327, 563, 669, 726
BstUI	CGCG	3 cut(s)	381, 460, 590
BsuRI	GGCC	6 cut(s)	106, 135, 220, 284, 683, 689
BtgI	CCRYGG	3 cut(s)	211, 247, 684
BtsCI	GGATG	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	460, 748
CfoI	GCGC	6 cut(s)	210, 254, 383, 460, 462, 483
Cfr13I	GGNCC	5 cut(s)	105, 133, 514, 567, 600
CseI	GACGC	2 cut(s)	538, 596
CsiI	ACCWGGT	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	4 cut(s)	212, 535, 685, 784
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	31, 175
DinI	GGCGCC	1 cut(s)	253
EaeI	YGGCCR	3 cut(s)	282, 681, 687
Eco130I	CCWWGG	2 cut(s)	211, 684
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	3 cut(s)	514, 567, 600
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	4 cut(s)	225, 276, 669, 726
EcoT14I	CCWWGG	2 cut(s)	211, 684
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	211, 684
FaeI	CATG	4 cut(s)	215, 538, 688, 787
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	4 cut(s)	211, 534, 684, 783
FauI	CCCGC	3 cut(s)	326, 354, 500
FauNDI	CATATG	1 cut(s)	422
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	285
FspI	TGCGCA	1 cut(s)	482
GlaI	GCGC	6 cut(s)	209, 253, 382, 459, 461, 482
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	3 cut(s)	262, 266, 618
GsuI	CTGGAG	2 cut(s)	385, 728
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	6 cut(s)	106, 135, 220, 284, 683, 689
HapII	CCGG	4 cut(s)	312, 329, 565, 598
HgaI	GACGC	2 cut(s)	538, 596
HhaI	GCGC	6 cut(s)	210, 254, 383, 460, 462, 483
Hin1I	GRCGYC	2 cut(s)	252, 549
Hin1II	CATG	4 cut(s)	215, 538, 688, 787
Hin6I	GCGC	6 cut(s)	208, 252, 381, 458, 460, 481
HinP1I	GCGC	6 cut(s)	208, 252, 381, 458, 460, 481
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	3 cut(s)	501, 560, 719
HpaII	CCGG	4 cut(s)	312, 329, 565, 598
HphI	GGTGA	3 cut(s)	100, 111, 283
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	355, 781
Hpy188III	TCNNGA	3 cut(s)	402, 498, 707
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	2 cut(s)	554, 590
HpyAV	CCTTC	3 cut(s)	146, 532, 580
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	165, 203, 750
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	31, 175
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	2 cut(s)	252, 549
Hsp92II	CATG	4 cut(s)	215, 538, 688, 787
HspAI	GCGC	6 cut(s)	208, 252, 381, 458, 460, 481
KasI	GGCGCC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	318
LweI	GCATC	1 cut(s)	174
MabI	ACCWGGT	1 cut(s)	669
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	2 cut(s)	649, 756
MbiI	CCGCTC	1 cut(s)	495
MboII	GAAGA	4 cut(s)	160, 163, 409, 714
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	360, 431
MlsI	TGGCCA	2 cut(s)	683, 689
MluCI	AATT	3 cut(s)	67, 521, 736
MluI	ACGCGT	1 cut(s)	588
MluNI	TGGCCA	2 cut(s)	683, 689
Mly113I	GGCGCC	1 cut(s)	252
Mox20I	TGGCCA	2 cut(s)	683, 689
MscI	TGGCCA	2 cut(s)	683, 689
MseI	TTAA	5 cut(s)	56, 180, 699, 771, 798
Msp20I	TGGCCA	2 cut(s)	683, 689
MspA1I	CMGCKG	1 cut(s)	262
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	4 cut(s)	312, 329, 565, 598
MspR9I	CCNGG	6 cut(s)	227, 278, 329, 565, 671, 728
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	4 cut(s)	227, 278, 671, 728
MvnI	CGCG	3 cut(s)	381, 460, 590
MwoI	GCNNNNNNNGC	1 cut(s)	355
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	329, 565
NcoI	CCATGG	2 cut(s)	211, 684
NdeI	CATATG	1 cut(s)	422
NlaIII	CATG	4 cut(s)	215, 538, 688, 787
NlaIV	GGNNCC	5 cut(s)	253, 316, 333, 516, 732
NmeAIII	GCCGAG	1 cut(s)	434
NsbI	TGCGCA	1 cut(s)	482
PauI	GCGCGC	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	501, 560, 719
PflFI	GACNNNGTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	130
PfoI	TCCNGGA	2 cut(s)	327, 563
PkrI	GCNGC	1 cut(s)	286
PluTI	GGCGCC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	4 cut(s)	225, 276, 669, 726
PspFI	CCCAGC	3 cut(s)	258, 262, 614
PspGI	CCWGG	4 cut(s)	225, 276, 669, 726
PspN4I	GGNNCC	5 cut(s)	253, 316, 333, 516, 732
PspPI	GGNCC	5 cut(s)	105, 133, 514, 567, 600
PspPPI	RGGWCCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	548
PteI	GCGCGC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	5 cut(s)	56, 180, 699, 771, 798
SatI	GCNGC	1 cut(s)	285
Sau96I	GGNCC	5 cut(s)	105, 133, 514, 567, 600
ScrFI	CCNGG	6 cut(s)	227, 278, 329, 565, 671, 728
SduI	GDGCHC	2 cut(s)	360, 431
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	174
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	3 cut(s)	514, 567, 600
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	3 cut(s)	67, 521, 736
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	7 cut(s)	238, 285, 319, 347, 379, 486, 493
SspDI	GGCGCC	1 cut(s)	251
SspI	AATATT	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	6 cut(s)	225, 276, 327, 563, 669, 726
StyI	CCWWGG	2 cut(s)	211, 684
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	4 cut(s)	411, 558, 585, 740
TasI	AATT	3 cut(s)	67, 521, 736
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	3 cut(s)	501, 560, 719
Tru1I	TTAA	5 cut(s)	56, 180, 699, 771, 798
Tru9I	TTAA	5 cut(s)	56, 180, 699, 771, 798
TspDTI	ATGAA	2 cut(s)	409, 551
TspGWI	ACGGA	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	3 cut(s)	514, 567, 600
XagI	CCTNNNNNAGG	1 cut(s)	509
XapI	RAATTY	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.