Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

13211780 .. 13212697

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAAGACTCTAACTTGGATTGCGTCCGGCCAGATTTGTCCACATATAATAGCCTCATTCATGTGCTCTGCTTGGTGGGGAAGTTGAATGATGCACTTACTGTATGGGAGGAATTGAAGGGCTCCGGCCACGAGCTGGACGCAATTACCTATGGAATTCTTGTTCAGGGGTGTTGTAAATGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCTGATACCATTGTTTATAATTCTCTACTAGATGGGCTATTCAAGGCCAGGAAGGTTAATGATGGCTGTCAGTTATTTGAGAATATGGTTCAGAATGGGGGTCAGTTTGTGGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGAGGGTTTGCTTGAGGAAGCACTAGGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTAATTTAGTTACTATTTTGTCACTTGTGATTGGGCTGTATAAAGGTCGGTGGGATTGGACGGACAAGCTCATGAAGCACATTAGAGATGGTAACCTAGTGGCAAGTGTTCTTAAATGGAAGGTTGATATGGAGGCTTCGCTGAAAAATCCACAGAGAAATAGCAAGGATTCTACATCATTGTTCCCAAGTAAAGGCGACTTGAGCAAGATTATGAGTTTAATAAAGTCTGCTGAATCAACTATGGATGCAGGCCTAGATTCAGAGGCTGCGAGGGTTAAGGAAAATAATAAGAATTTGTCCACCGATACTGATCAGTGCTCATCATCTGCACATATGGATCAATTGGCTAATCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

272

Amino Acids

30.13

Weight (kDa)

5.11

Isoelectric Point (pI)

19.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	8 - 39	1.9e-08	PPR repeat
PPR_2	PF13041	11 - 60	1.3e-13	PPR repeat family
PPR	PF01535	14 - 43	1e-05	PPR repeat
PPR_1	PF12854	43 - 75	4.6e-09	PPR repeat
PPR_1	PF12854	78 - 110	4.1e-07	PPR repeat
PPR_2	PF13041	81 - 131	2.2e-10	PPR repeat family
PPR_1	PF12854	117 - 146	1.5e-06	PPR repeat
PPR_2	PF13041	120 - 165	1.2e-07	PPR repeat family
PPR	PF01535	120 - 150	1.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	136
AclWI	GGATC	1 cut(s)	801
AcoI	YGGCCR	2 cut(s)	29, 127
AcsI	RAATTY	2 cut(s)	156, 748
AfiI	CCNNNNNNNGG	2 cut(s)	136, 647
AgsI	TTSAA	3 cut(s)	88, 118, 283
AjnI	CCWGG	1 cut(s)	287
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	3 cut(s)	136, 226, 523
AluI	AGCT	3 cut(s)	136, 226, 523
Alw21I	GWGCWC	2 cut(s)	69, 776
AlwI	GGATC	1 cut(s)	801
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	4 cut(s)	29, 127, 285, 706
ApeKI	GCWGC	2 cut(s)	223, 722
ApoI	RAATTY	2 cut(s)	156, 748
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	131
Bbv12I	GWGCWC	2 cut(s)	69, 776
BbvI	GCAGC	2 cut(s)	235, 709
BccI	CCATC	4 cut(s)	266, 296, 347, 536
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	766
BfaI	CTAG	4 cut(s)	269, 416, 551, 710
BisI	GCNGC	2 cut(s)	224, 723
BlsI	GCNGC	2 cut(s)	225, 724
Bme1390I	CCNGG	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	3 cut(s)	82, 187, 691
BpuEI	CTTGAG	2 cut(s)	425, 676
BsaBI	GATNNNNATC	1 cut(s)	765
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 647
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	358, 706
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	136, 647
BseXI	GCAGC	2 cut(s)	235, 709
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	4 cut(s)	31, 129, 287, 708
BsiHKAI	GWGCWC	2 cut(s)	69, 776
BsiSI	CCGG	2 cut(s)	28, 126
BslI	CCNNNNNNNGG	2 cut(s)	136, 647
BsnI	GGCC	4 cut(s)	31, 129, 287, 708
Bsp1286I	GDGCHC	3 cut(s)	69, 125, 776
Bsp143I	GATC	2 cut(s)	766, 793
BspANI	GGCC	4 cut(s)	31, 129, 287, 708
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	801
BssMI	GATC	2 cut(s)	766, 793
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	103, 454
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	358, 706
BstKTI	GATC	2 cut(s)	769, 796
BstMBI	GATC	2 cut(s)	766, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 657
BstNI	CCWGG	1 cut(s)	289
BstPI	GGTNACC	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	235, 709
BsuRI	GGCC	4 cut(s)	31, 129, 287, 708
BtsCI	GGATG	2 cut(s)	358, 706
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	1 cut(s)	706
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	1 cut(s)	525
CseI	GACGC	2 cut(s)	13, 149
CviAII	CATG	2 cut(s)	62, 526
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	768, 795
DpnII	GATC	2 cut(s)	766, 793
EaeI	YGGCCR	2 cut(s)	29, 127
Eco147I	AGGCCT	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	2 cut(s)	65, 529
FatI	CATG	2 cut(s)	61, 525
FauNDI	CATATG	1 cut(s)	789
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	224, 723
FokI	GGATG	2 cut(s)	365, 713
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	224, 723
FspBI	CTAG	4 cut(s)	269, 416, 551, 710
GluI	GCNGC	2 cut(s)	224, 723
HaeIII	GGCC	4 cut(s)	31, 129, 287, 708
HapII	CCGG	2 cut(s)	28, 126
HgaI	GACGC	2 cut(s)	13, 149
Hin1II	CATG	2 cut(s)	65, 529
HinfI	GANTC	4 cut(s)	8, 623, 689, 713
HpaII	CCGG	2 cut(s)	28, 126
Hpy166II	GTNNAC	2 cut(s)	42, 756
Hpy188I	TCNGA	2 cut(s)	333, 718
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	2 cut(s)	42, 756
HpyAV	CCTTC	3 cut(s)	112, 286, 568
HpyCH4III	ACNGT	2 cut(s)	103, 454
HpyCH4V	TGCA	5 cut(s)	95, 223, 382, 704, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 657
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	65, 529
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	2 cut(s)	766, 793
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	9 cut(s)	41, 45, 122, 139, 152, 255, 274, 301, 690
Lsp1109I	GCAGC	2 cut(s)	235, 709
LweI	GCATC	3 cut(s)	82, 187, 691
MaeI	CTAG	4 cut(s)	269, 416, 551, 710
MaeIII	GTNAC	4 cut(s)	358, 463, 474, 545
MalI	GATC	2 cut(s)	768, 795
MboI	GATC	2 cut(s)	766, 793
MboII	GAAGA	1 cut(s)	440
MfeI	CAATTG	1 cut(s)	797
MhlI	GDGCHC	3 cut(s)	69, 125, 776
MluCI	AATT	7 cut(s)	113, 144, 156, 259, 457, 748, 797
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	8 cut(s)	65, 103, 388, 400, 437, 580, 712, 720
MseI	TTAA	6 cut(s)	297, 456, 567, 674, 732, 814
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	28, 126
MspR9I	CCNGG	1 cut(s)	289
MunI	CAATTG	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	529, 657
NdeI	CATATG	1 cut(s)	789
NdeII	GATC	2 cut(s)	766, 793
NlaIII	CATG	2 cut(s)	65, 529
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	474
PagI	TCATGA	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	708
PfeI	GAWTC	3 cut(s)	623, 689, 713
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	225, 724
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	6 cut(s)	297, 456, 567, 674, 732, 814
SatI	GCNGC	2 cut(s)	224, 723
Sau3AI	GATC	2 cut(s)	766, 793
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	3 cut(s)	69, 125, 776
SetI	ASST	8 cut(s)	138, 152, 228, 297, 502, 525, 552, 579
SfaNI	GCATC	3 cut(s)	82, 187, 691
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	404, 655
SmoI	CTYRAG	2 cut(s)	404, 655
Sse9I	AATT	7 cut(s)	113, 144, 156, 259, 457, 748, 797
SseBI	AGGCCT	1 cut(s)	708
SspMI	CTAG	4 cut(s)	269, 416, 551, 710
StuI	AGGCCT	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	103, 454
TaqI	TCGA	1 cut(s)	187
TasI	AATT	7 cut(s)	113, 144, 156, 259, 457, 748, 797
TfiI	GAWTC	3 cut(s)	623, 689, 713
Tru1I	TTAA	6 cut(s)	297, 456, 567, 674, 732, 814
Tru9I	TTAA	6 cut(s)	297, 456, 567, 674, 732, 814
TscAI	CASTG	1 cut(s)	776
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	2 cut(s)	223, 722
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	3 cut(s)	17, 50, 542
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	776
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	156, 748
XspI	CTAG	4 cut(s)	269, 416, 551, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.