Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

53438249 .. 53441003

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGCGCCATGGAAGGCCTATATTCCAAGCCAAACCCCACATCGGCGCTGCTGCTGCTTCTGAACTGGGAGACATACTCCTGGTGGCCTCCATCACCAAGACCCTCTCCCAGTCCGGCACCCGCAACCTCCCCCACCCTCCTCCTCCTCTCTCCGACCCTCTCCTCCTCCAAATCCTCCGCACCCAATCCCTCCACCCCTCCAAGAAACTCGACTTCTTCAAATGGTCCTCTCTCACCCATTCCATCAAACACTCCCCCGCCACTTTCTCCCACATCCTCCGCACCGCCTGCCGCGCCGGGTTCCTCTCCGAAATCCCGGGACTACTTAACATCATGAAACAACATGCTGTAATGGTCGATTCCGGAACCTTCAAGTCTTTGCTGGACGCCTTCATCAGGGCAGGTAAGTTTGACATGGCAATCGAAATTTTAGACATTATGCAAGAACTGGGTGCTGAGCTGAGTACGGATATGTACAACTCGGTGTTGGTTGCTTTGGTTAGGAAGGGTCAGTTGGGTATGGCTATGTCTATTTTGGTTAAGCTTCTAGAAGGTGGGTCTTCTCAAGTACCCAATTGCATTGCCTGTAATGAGTTGTTGGTGGGTCTTAGGAAAGGTGACATGAGGGTAGAGTTTAAGCAGGTGTTTGATAAGCTTAGGGGGAATGAGTGGTTTGAGATGGATACTTGGGGTTATAATATTTGTATTCATGCGTTTGGGTGTTGGGGTGATCTGGGTACTAGTTTGAGTCTGTTTAAGGAGATGAAAGACTTGAACTCGGACTCGGTTTTTCCTGATTTGTCTACTTATAATAGCCTCATTCATGTGCTGTGTTTGGTTGGGAAGGTGGATGATGCAGTTACTGTGTGGGAGGAGTTGAAGTGTTCGGGTCATGAGCCGGATGCCATTACATATCGGATTCTTATTCAGGGGTGTTGTAAGTGTTATCGAATAGAGGAAGCTACCAAGATTTTTAGTGAAATGCAGAACAATGGCTACAATCCGGATACGGTTGTTTATAATTCGTTGATGGATGGGTTGTTCAAGGCGAGGAAAGTTAATGAAGGGTGTCAGATGTTTGAGAGGATGGTTCAGTATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTGATTGATGGGTTGTTTAGGAATGCAAGGGCCGAGGCTGCTTACACTATATTTTGTGACTTGAAGAAGAAAGGTCAGTTTGTGGATGGTGTTACGTATAGCATTGTTGCTCTGCAACTTTGTAGGGAGGGTCTGCTCGAGGAGGCGCTAGAATTGGTGGAAGAAATGGAAGTGCGAGGCTTTACTGTTGATTTGGTTACTATATCAACACTCATGATTGGGCTGTATAAGCATAGTCGATGGGATTGGACAGACAAGCTCATGAAGCGTATTAGGGATGGTAATCTGCTGCCTAGTGTTCTTAGATGGAAAGTCGATATGGAAGCTACAATGAAAGCTCCACAGAGCAAGAAAAAGGACCTTACACCACTGTTCCCAAGTAAAGGTGATTTCAGCGATGTTTTGAGTCTAATAAGTTCTGCTGCCTCGAAAATGGATGGAGTCATTGAATCAGATGATGCTGGGGTTAAAGATGATAATAATTCGTCTACAGATATTGATCAGTGGTCATCATCTCCACATATGGATCACTTGGCCAATCAATTGAAGTCCACTGACCACGCGTCTCAGCTGTTTTCGCTATCTAGAGGGCAACGAGTTCAAGCCAAAGGAGAAAGCACTTTTGATATTGATATGGTAAATACTTTCTTATCCCTATTTTTGGCCAAGGGGAAGCTGAGCATAGCTTGCAAATTGTTTGAGATTTTCAGTGATGCGGGTGCATACCCTGTGAGTTACACTTATAATTCCATCTTGAGTTCGTTTGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTGCTCAGTGAAATGGGAGAAAAAGTTTGCCCCACAGATATAGCAACATACAATATGATAATTCAAGGCTTGGGGAAGATGGGAAGGGCCGATCTAGCCAGTAGTGTTCTGGATAAGCTAATGAAGCAGGGTGGTTATCTTGATGTTGTCATGTACAACACCTTGATTAATGCGCTGGGGAAGGCTAACCGGATTGACGAAGTAAACAAGCTATTTAAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTCAATACACTTATTGAAGTTCATAGTAAAGCAGGTCGACTGAAAGATGCGTATAAATTTCTGAAAATGATGCTGGATTCAGGCTGCACACCAAACCATGTCACTGACACCACTTTGGATTTTCTGGGGAAGGAGATTGAGAAATCGAGGTACCAAAAGGCATCATTTGTACGAAATAAGGATGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

792

Amino Acids

88.37

Weight (kDa)

6.64

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	90 - 181	2.8e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	243 - 401	7.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	256 - 312	4.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 293	6e-09	PPR repeat
PPR_2	PF13041	265 - 314	4.1e-16	PPR repeat family
PPR_1	PF12854	297 - 329	7.1e-10	PPR repeat
PPR	PF01535	303 - 332	1.6e-06	PPR repeat
PPR_2	PF13041	307 - 338	4.9e-06	PPR repeat family
PPR_3	PF13812	323 - 380	1.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 364	1.3e-07	PPR repeat
PPR_2	PF13041	335 - 383	2.7e-14	PPR repeat family
PPR_2	PF13041	373 - 413	5.3e-09	PPR repeat family
PPR_2	PF13041	417 - 454	4e-06	PPR repeat family
PPR_2	PF13041	621 - 669	1.1e-11	PPR repeat family
PPR_3	PF13812	678 - 737	1.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	690 - 719	5e-07	PPR repeat
PPR_2	PF13041	691 - 734	1.8e-15	PPR repeat family
PPR	PF01535	693 - 723	3e-08	PPR repeat
PPR_3	PF13812	713 - 764	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	722 - 753	5.1e-10	PPR repeat
PPR_2	PF13041	725 - 768	3.3e-12	PPR repeat family
PPR	PF01535	728 - 758	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	696, 810, 1020, 1875
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	3 cut(s)	392, 631, 2210
Acc65I	GGTACC	1 cut(s)	2337
AccB1I	GGYRCC	2 cut(s)	116, 2337
AccI	GTMKAC	3 cut(s)	803, 1619, 2224
AccII	CGCG	2 cut(s)	294, 1694
AccIII	TCCGGA	2 cut(s)	362, 1003
AciI	CCGC	7 cut(s)	121, 178, 258, 280, 285, 292, 1847
AclWI	GGATC	1 cut(s)	1665
AcoI	YGGCCR	2 cut(s)	1665, 1794
AcsI	RAATTY	2 cut(s)	426, 2243
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	7 cut(s)	466, 476, 570, 739, 2084, 2339, 2358
AfiI	CCNNNNNNNGG	5 cut(s)	41, 396, 1116, 1514, 1792
AflIII	ACRYGT	1 cut(s)	1692
AhdI	GACNNNNNGTC	1 cut(s)	1693
AhlI	ACTAGT	1 cut(s)	740
AjiI	CACGTC	1 cut(s)	1116
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AloI	GAACNNNNNNTCC	2 cut(s)	1025, 1057
Alw21I	GWGCWC	1 cut(s)	1935
Alw26I	GTCTC	2 cut(s)	63, 1701
AlwI	GGATC	1 cut(s)	1665
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	2 cut(s)	316, 1268
Aor13HI	TCCGGA	2 cut(s)	362, 1003
AoxI	GGCC	6 cut(s)	14, 84, 1161, 1665, 1794, 2016
ApeKI	GCWGC	7 cut(s)	47, 50, 53, 1169, 1420, 1553, 2271
ApoI	RAATTY	2 cut(s)	426, 2243
AseI	ATTAAT	1 cut(s)	2097
Asp718I	GGTACC	1 cut(s)	2337
AspLEI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
AspS9I	GGNCC	4 cut(s)	225, 1161, 1489, 2016
AsuC2I	CCSGG	3 cut(s)	298, 317, 318
AsuHPI	GGTGA	6 cut(s)	85, 226, 629, 740, 1114, 1529
AvaI	CYCGRG	2 cut(s)	316, 1268
AvaII	GGWCC	2 cut(s)	225, 1489
BaeI	ACNNNNGTAYC	2 cut(s)	999, 1032
BalI	TGGCCA	2 cut(s)	1667, 1796
BanI	GGYRCC	2 cut(s)	116, 2337
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	1935
BbvI	GCAGC	7 cut(s)	34, 37, 40, 1156, 1407, 1540, 2258
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	2 cut(s)	676, 1000
BclI	TGATCA	1 cut(s)	1630
BcnI	CCSGG	3 cut(s)	298, 317, 318
BcoDI	GTCTC	2 cut(s)	63, 1701
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
BfmI	CTRYAG	1 cut(s)	1620
BfoI	RGCGCY	2 cut(s)	48, 1280
BfuAI	ACCTGC	3 cut(s)	392, 631, 2210
BfuI	GTATCC	2 cut(s)	676, 1000
BisI	GCNGC	8 cut(s)	48, 51, 54, 292, 1170, 1421, 1554, 2272
BlpI	GCTNAGC	2 cut(s)	456, 1808
BlsI	GCNGC	8 cut(s)	49, 52, 55, 293, 1171, 1422, 1555, 2273
Bme1390I	CCNGG	4 cut(s)	80, 298, 317, 318
Bme18I	GGWCC	2 cut(s)	225, 1489
BmeRI	GACNNNNNGTC	1 cut(s)	1693
BmeT110I	CYCGRG	2 cut(s)	316, 1268
BmgBI	CACGTC	1 cut(s)	1116
BmgT120I	GGNCC	4 cut(s)	225, 1161, 1489, 2016
BmiI	GGNNCC	4 cut(s)	118, 302, 367, 2339
BmrFI	CCNGG	4 cut(s)	80, 298, 317, 318
BmrI	ACTGGG	3 cut(s)	74, 103, 458
BmsI	GCATC	7 cut(s)	844, 892, 1579, 1834, 2224, 2247, 2357
BmuI	ACTGGG	3 cut(s)	74, 103, 458
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
Bpu10I	CCTNAGC	1 cut(s)	656
Bpu1102I	GCTNAGC	2 cut(s)	456, 1808
BpuEI	CTTGAG	2 cut(s)	549, 1906
BpuMI	CCSGG	3 cut(s)	298, 317, 318
BsaAI	YACGTR	1 cut(s)	1227
BsaBI	GATNNNNATC	2 cut(s)	1413, 1629
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	7, 316, 1164, 1797
BsaWI	WCCGGW	3 cut(s)	362, 1003, 2118
BsaXI	ACNNNNNCTCC	4 cut(s)	866, 896, 1938, 1968
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 396, 1116, 1514, 1792
Bse1I	ACTGG	4 cut(s)	69, 109, 453, 2028
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	2 cut(s)	1413, 1629
BseAI	TCCGGA	2 cut(s)	362, 1003
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	4 cut(s)	7, 316, 1164, 1797
BseGI	GGATG	9 cut(s)	273, 856, 907, 1039, 1092, 1222, 1414, 1573, 2374
BseJI	GATNNNNATC	2 cut(s)	1413, 1629
BseLI	CCNNNNNNNGG	5 cut(s)	41, 396, 1116, 1514, 1792
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	5 cut(s)	447, 452, 1712, 1799, 1948
BseNI	ACTGG	4 cut(s)	69, 109, 453, 2028
BseRI	GAGGAG	7 cut(s)	129, 132, 135, 152, 155, 887, 1286
BseXI	GCAGC	7 cut(s)	34, 37, 40, 1156, 1407, 1540, 2258
BseYI	CCCAGC	2 cut(s)	1592, 2104
BsgI	GTGCAG	1 cut(s)	2257
Bsh1236I	CGCG	2 cut(s)	294, 1694
BshFI	GGCC	6 cut(s)	16, 86, 1163, 1667, 1796, 2018
BshNI	GGYRCC	2 cut(s)	116, 2337
BsiHKAI	GWGCWC	1 cut(s)	1935
BsiHKCI	CYCGRG	2 cut(s)	316, 1268
BsiSI	CCGG	7 cut(s)	114, 297, 317, 363, 899, 1004, 2119
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	5 cut(s)	41, 396, 1116, 1514, 1792
BsmAI	GTCTC	2 cut(s)	63, 1701
BsmBI	CGTCTC	1 cut(s)	1701
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	1159
BsnI	GGCC	6 cut(s)	16, 86, 1163, 1667, 1796, 2018
BsoBI	CYCGRG	2 cut(s)	316, 1268
Bsp1286I	GDGCHC	1 cut(s)	1935
Bsp13I	TCCGGA	2 cut(s)	362, 1003
Bsp1407I	TGTACA	2 cut(s)	474, 2082
Bsp143I	GATC	4 cut(s)	730, 1630, 1657, 2020
Bsp1720I	GCTNAGC	2 cut(s)	456, 1808
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	7 cut(s)	121, 178, 258, 280, 285, 292, 1847
BspANI	GGCC	6 cut(s)	16, 86, 1163, 1667, 1796, 2018
BspCNI	CTCAG	5 cut(s)	448, 453, 1711, 1800, 1947
BspEI	TCCGGA	2 cut(s)	362, 1003
BspFNI	CGCG	2 cut(s)	294, 1694
BspHI	TCATGA	4 cut(s)	333, 892, 1344, 1392
BspLI	GGNNCC	4 cut(s)	118, 302, 367, 2339
BspMI	ACCTGC	3 cut(s)	392, 631, 2210
BspPI	GGATC	1 cut(s)	1665
BspT107I	GGYRCC	2 cut(s)	116, 2337
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	2 cut(s)	474, 2082
BsrI	ACTGG	4 cut(s)	69, 109, 453, 2028
BssECI	CCNNGG	4 cut(s)	7, 316, 1164, 1797
BssMI	GATC	4 cut(s)	730, 1630, 1657, 2020
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	7, 1797
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	4 cut(s)	865, 1012, 1318, 1503
Bst6I	CTCTTC	1 cut(s)	2150
BstACI	GRCGYC	1 cut(s)	387
BstAPI	GCANNNNNTGC	2 cut(s)	288, 1818
BstAUI	TGTACA	2 cut(s)	474, 2082
BstBAI	YACGTR	1 cut(s)	1227
BstC8I	GCNNGC	2 cut(s)	289, 1819
BstDEI	CTNAG	8 cut(s)	456, 461, 608, 656, 1433, 1698, 1808, 1934
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	9 cut(s)	273, 856, 907, 1039, 1092, 1222, 1414, 1573, 2374
BstFNI	CGCG	2 cut(s)	294, 1694
BstH2I	RGCGCY	2 cut(s)	48, 1280
BstHHI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
BstKTI	GATC	4 cut(s)	733, 1633, 1660, 2023
BstMAI	GTCTC	2 cut(s)	63, 1701
BstMBI	GATC	4 cut(s)	730, 1630, 1657, 2020
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	78, 296, 315, 316
BstSFI	CTRYAG	1 cut(s)	1620
BstSNI	TACGTA	1 cut(s)	1227
BstUI	CGCG	2 cut(s)	294, 1694
BstV1I	GCAGC	7 cut(s)	34, 37, 40, 1156, 1407, 1540, 2258
BstV2I	GAAGAC	1 cut(s)	552
BsuI	GTATCC	2 cut(s)	676, 1000
BsuRI	GGCC	6 cut(s)	16, 86, 1163, 1667, 1796, 2018
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	1542
BtrI	CACGTC	1 cut(s)	1116
BtsCI	GGATG	9 cut(s)	273, 856, 907, 1039, 1092, 1222, 1414, 1573, 2374
BtsIMutI	CAGTG	6 cut(s)	1499, 1640, 1683, 1846, 1942, 2289
BveI	ACCTGC	3 cut(s)	392, 631, 2210
Cac8I	GCNNGC	2 cut(s)	289, 1819
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	4 cut(s)	333, 892, 1344, 1392
CfoI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
Cfr13I	GGNCC	4 cut(s)	225, 1161, 1489, 2016
Cfr9I	CCCGGG	1 cut(s)	316
CseI	GACGC	2 cut(s)	395, 1683
Csp6I	GTAC	7 cut(s)	465, 475, 569, 738, 2083, 2338, 2357
CviQI	GTAC	7 cut(s)	465, 475, 569, 738, 2083, 2338, 2357
DdeI	CTNAG	8 cut(s)	456, 461, 608, 656, 1433, 1698, 1808, 1934
DpnI	GATC	4 cut(s)	732, 1632, 1659, 2022
DpnII	GATC	4 cut(s)	730, 1630, 1657, 2020
DriI	GACNNNNNGTC	1 cut(s)	1693
EaeI	YGGCCR	2 cut(s)	1665, 1794
Eam1104I	CTCTTC	1 cut(s)	2150
Eam1105I	GACNNNNNGTC	1 cut(s)	1693
EarI	CTCTTC	1 cut(s)	2150
Eco105I	TACGTA	1 cut(s)	1227
Eco130I	CCWWGG	2 cut(s)	7, 1797
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	225, 1489
Eco88I	CYCGRG	2 cut(s)	316, 1268
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	1489
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	7, 1797
ErhI	CCWWGG	2 cut(s)	7, 1797
Esp3I	CGTCTC	1 cut(s)	1701
FalI	AAGNNNNNCTT	2 cut(s)	1895, 1927
FaqI	GGGAC	1 cut(s)	333
FauI	CCCGC	3 cut(s)	128, 265, 1840
FauNDI	CATATG	1 cut(s)	1653
FbaI	TGATCA	1 cut(s)	1630
FblI	GTMKAC	3 cut(s)	803, 1619, 2224
Fnu4HI	GCNGC	8 cut(s)	48, 51, 54, 292, 1170, 1421, 1554, 2272
FokI	GGATG	8 cut(s)	260, 863, 914, 1046, 1099, 1229, 1421, 1580
Fsp4HI	GCNGC	8 cut(s)	48, 51, 54, 292, 1170, 1421, 1554, 2272
FspBI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
GlaI	GCGC	5 cut(s)	5, 46, 295, 1278, 2103
GluI	GCNGC	8 cut(s)	48, 51, 54, 292, 1170, 1421, 1554, 2272
GsaI	CCCAGC	2 cut(s)	1596, 2108
HaeII	RGCGCY	2 cut(s)	48, 1280
HaeIII	GGCC	6 cut(s)	16, 86, 1163, 1667, 1796, 2018
HapII	CCGG	7 cut(s)	114, 297, 317, 363, 899, 1004, 2119
HgaI	GACGC	2 cut(s)	395, 1683
HhaI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
Hin1I	GRCGYC	1 cut(s)	387
Hin6I	GCGC	5 cut(s)	4, 45, 294, 1277, 2102
HinP1I	GCGC	5 cut(s)	4, 45, 294, 1277, 2102
HincII	GTYRAC	1 cut(s)	2225
HindII	GTYRAC	1 cut(s)	2225
HindIII	AAGCTT	2 cut(s)	542, 653
HinfI	GANTC	9 cut(s)	359, 748, 782, 919, 1537, 1572, 1580, 2264, 2372
HpaII	CCGG	7 cut(s)	114, 297, 317, 363, 899, 1004, 2119
HphI	GGTGA	6 cut(s)	85, 226, 629, 740, 1114, 1529
Hpy166II	GTNNAC	6 cut(s)	804, 1119, 1620, 1683, 2134, 2225
Hpy188I	TCNGA	9 cut(s)	61, 154, 310, 781, 918, 1074, 1134, 1585, 2250
Hpy8I	GTNNAC	6 cut(s)	804, 1119, 1620, 1683, 2134, 2225
Hpy99I	CGWCG	1 cut(s)	1117
HpyCH4III	ACNGT	4 cut(s)	865, 1012, 1318, 1503
HpyCH4IV	ACGT	3 cut(s)	1115, 1121, 1226
HpyCH4V	TGCA	9 cut(s)	442, 579, 857, 985, 1157, 1246, 1821, 1853, 2274
HpyF3I	CTNAG	8 cut(s)	456, 461, 608, 656, 1433, 1698, 1808, 1934
HpySE526I	ACGT	3 cut(s)	1115, 1121, 1226
Hsp92I	GRCGYC	1 cut(s)	387
HspAI	GCGC	5 cut(s)	4, 45, 294, 1277, 2102
Kpn2I	TCCGGA	2 cut(s)	362, 1003
KpnI	GGTACC	1 cut(s)	2341
Ksp22I	TGATCA	1 cut(s)	1630
Kzo9I	GATC	4 cut(s)	730, 1630, 1657, 2020
LmnI	GCTCC	1 cut(s)	1474
Lsp1109I	GCAGC	7 cut(s)	34, 37, 40, 1156, 1407, 1540, 2258
LweI	GCATC	7 cut(s)	844, 892, 1579, 1834, 2224, 2247, 2357
MaeI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
MaeII	ACGT	3 cut(s)	1115, 1121, 1226
MaeIII	GTNAC	8 cut(s)	617, 859, 1187, 1222, 1327, 1865, 2182, 2287
MalI	GATC	4 cut(s)	732, 1632, 1659, 2022
MboI	GATC	4 cut(s)	730, 1630, 1657, 2020
MboII	GAAGA	7 cut(s)	208, 552, 1207, 1210, 1304, 2017, 2167
MfeI	CAATTG	2 cut(s)	574, 1673
MhlI	GDGCHC	1 cut(s)	1935
MlsI	TGGCCA	2 cut(s)	1667, 1796
MluI	ACGCGT	1 cut(s)	1692
MluNI	TGGCCA	2 cut(s)	1667, 1796
MlyI	GAGTC	5 cut(s)	757, 776, 1546, 1581, 2366
MmeI	TCCRAC	1 cut(s)	177
Mox20I	TGGCCA	2 cut(s)	1667, 1796
MroI	TCCGGA	2 cut(s)	362, 1003
MscI	TGGCCA	2 cut(s)	1667, 1796
MseI	TTAA	8 cut(s)	327, 540, 636, 756, 1059, 1599, 2097, 2145
MslI	CAYNNNNRTG	1 cut(s)	824
Msp20I	TGGCCA	2 cut(s)	1667, 1796
MspA1I	CMGCKG	1 cut(s)	1702
MspI	CCGG	7 cut(s)	114, 297, 317, 363, 899, 1004, 2119
MspR9I	CCNGG	4 cut(s)	80, 298, 317, 318
MunI	CAATTG	2 cut(s)	574, 1673
Mva1269I	GAATGC	1 cut(s)	1159
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	294, 1694
NciI	CCSGG	3 cut(s)	298, 317, 318
NcoI	CCATGG	1 cut(s)	7
NdeI	CATATG	1 cut(s)	1653
NdeII	GATC	4 cut(s)	730, 1630, 1657, 2020
NlaIV	GGNNCC	4 cut(s)	118, 302, 367, 2339
NmeAIII	GCCGAG	1 cut(s)	1189
NmuCI	GTSAC	4 cut(s)	617, 1187, 2182, 2287
NspI	RCATGY	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	1268
PagI	TCATGA	4 cut(s)	333, 892, 1344, 1392
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PctI	GAATGC	1 cut(s)	1159
PfeI	GAWTC	4 cut(s)	359, 919, 1580, 2264
PkrI	GCNGC	8 cut(s)	49, 52, 55, 293, 1171, 1422, 1555, 2273
PleI	GAGTC	5 cut(s)	756, 776, 1545, 1580, 2366
PpsI	GAGTC	5 cut(s)	756, 776, 1545, 1580, 2366
Ppu21I	YACGTR	1 cut(s)	1227
PpuMI	RGGWCCY	1 cut(s)	1489
PshBI	ATTAAT	1 cut(s)	2097
PsiI	TTATAA	4 cut(s)	696, 810, 1020, 1875
Psp5II	RGGWCCY	1 cut(s)	1489
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	2 cut(s)	1592, 2104
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	118, 302, 367, 2339
PspPI	GGNCC	4 cut(s)	225, 1161, 1489, 2016
PspPPI	RGGWCCY	1 cut(s)	1489
PspXI	VCTCGAGB	1 cut(s)	1268
PsrI	GAACNNNNNNTAC	2 cut(s)	980, 1012
PstNI	CAGNNNCTG	1 cut(s)	863
PvuII	CAGCTG	1 cut(s)	1702
RsaI	GTAC	7 cut(s)	466, 476, 570, 739, 2084, 2339, 2358
RsaNI	GTAC	7 cut(s)	465, 475, 569, 738, 2083, 2338, 2357
RseI	CAYNNNNRTG	1 cut(s)	824
SalI	GTCGAC	1 cut(s)	2223
SaqAI	TTAA	8 cut(s)	327, 540, 636, 756, 1059, 1599, 2097, 2145
SatI	GCNGC	8 cut(s)	48, 51, 54, 292, 1170, 1421, 1554, 2272
Sau3AI	GATC	4 cut(s)	730, 1630, 1657, 2020
Sau96I	GGNCC	4 cut(s)	225, 1161, 1489, 2016
SchI	GAGTC	5 cut(s)	757, 776, 1546, 1581, 2366
ScrFI	CCNGG	4 cut(s)	80, 298, 317, 318
SduI	GDGCHC	1 cut(s)	1935
SfaNI	GCATC	7 cut(s)	844, 892, 1579, 1834, 2224, 2247, 2357
SfcI	CTRYAG	1 cut(s)	1620
Sfr274I	CTCGAG	1 cut(s)	1268
SinI	GGWCC	2 cut(s)	225, 1489
SlaI	CTCGAG	1 cut(s)	1268
SmaI	CCCGGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	3 cut(s)	564, 1268, 1885
SmoI	CTYRAG	3 cut(s)	564, 1268, 1885
SnaBI	TACGTA	1 cut(s)	1227
SpeI	ACTAGT	1 cut(s)	740
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	7 cut(s)	121, 178, 258, 280, 285, 292, 1847
SspI	AATATT	2 cut(s)	700, 1129
SspMI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	78, 296, 315, 316
StyI	CCWWGG	2 cut(s)	7, 1797
TaaI	ACNGT	4 cut(s)	865, 1012, 1318, 1503
TaiI	ACGT	3 cut(s)	1118, 1124, 1229
TatI	WGTACW	2 cut(s)	474, 2082
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	4 cut(s)	359, 919, 1580, 2264
Tru1I	TTAA	8 cut(s)	327, 540, 636, 756, 1059, 1599, 2097, 2145
Tru9I	TTAA	8 cut(s)	327, 540, 636, 756, 1059, 1599, 2097, 2145
TscAI	CASTG	6 cut(s)	1506, 1640, 1690, 1846, 1942, 2296
TseFI	GTSAC	4 cut(s)	617, 1187, 2182, 2287
TseI	GCWGC	7 cut(s)	47, 50, 53, 1169, 1420, 1553, 2271
Tsp45I	GTSAC	4 cut(s)	617, 1187, 2182, 2287
TspGWI	ACGGA	1 cut(s)	482
TspMI	CCCGGG	1 cut(s)	316
TspRI	CASTG	6 cut(s)	1506, 1640, 1690, 1846, 1942, 2296
VpaK11BI	GGWCC	2 cut(s)	225, 1489
VspI	ATTAAT	1 cut(s)	2097
XagI	CCTNNNNNAGG	1 cut(s)	394
XapI	RAATTY	2 cut(s)	426, 2243
XbaI	TCTAGA	2 cut(s)	547, 1715
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2035
XhoI	CTCGAG	1 cut(s)	1268
XmaI	CCCGGG	1 cut(s)	316
XmiI	GTMKAC	3 cut(s)	803, 1619, 2224
XspI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.