Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12958034 .. 12958888

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGAATCGAAATAATCTAACACATGTACTAGCTGTTATGAGGGGTTTGAGATGGATACTTGGGTGTATAATATTTGCATTCATGCATTTGGGTGATTTCGGTACTAGTCTGAGTCTGTTCAGAGAGATGAAATACTCTAACTTGGATTACGTCGTGCCGGATTTGTCGACATATAATAGCCTCATTCATGTGCTCTGTTTGGTGGGGAAGTTGAATGATGCACTTACTGTGTGGGAGGAATTGAAGGGCTCCGGCCATGAGCCTGACACAATTACCTATAGAATTCTTATTCAGGTGTGTTGTAAGTGCTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCGGATACCATTGTTTATAATTCTCTAATAGATGGGTTATTCAAGGCTAGGAAGGTTAATGATGGCTGCCAGTTATTTGAGAAAATGGTTCAGAATGGGGCGAGAGCCTCGACGTGGACGTATAATATTCTCATGGATGGTTTGTTCAGGAATGGAAGGGCAGATGCTGCGTACACACTATTTTGTGACTTAAAGAAGAAGGGTCAGTTTGTTGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGACGGTCTGCTTGAGGAAGCGCTAGGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTGATTTAATTACTGTATCGTTACTTGTGATTGGGCTGTATAAAGAAGGTCGGTGGGATTGGACGGACAAGCTCATGAAGCACATTAGAGATGGTAACCTAGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

265

Amino Acids

30.11

Weight (kDa)

6.22

Isoelectric Point (pI)

19.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	3 cut(s)	30, 106, 542
AfeI	AGCGCT	1 cut(s)	645
AfiI	CCNNNNNNNGG	1 cut(s)	483
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	217, 247, 412
AhlI	ACTAGT	1 cut(s)	107
AjiI	CACGTC	1 cut(s)	483
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	3 cut(s)	35, 355, 757
AluI	AGCT	3 cut(s)	35, 355, 757
Alw21I	GWGCWC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	536
Aor51HI	AGCGCT	1 cut(s)	645
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	352, 435, 536
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	107
BaeI	ACNNNNGTAYC	4 cut(s)	50, 83, 366, 399
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	364, 422, 523
BccI	CCATC	6 cut(s)	48, 395, 425, 500, 578, 770
BciVI	GTATCC	2 cut(s)	51, 367
BcnI	CCSGG	1 cut(s)	371
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	5 cut(s)	32, 108, 417, 647, 785
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	647
BfuI	GTATCC	2 cut(s)	51, 367
BisI	GCNGC	3 cut(s)	353, 436, 537
BlsI	GCNGC	3 cut(s)	354, 437, 538
Bme1390I	CCNGG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	3 cut(s)	211, 316, 523
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	439
BseXI	GCAGC	3 cut(s)	364, 422, 523
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	161, 255, 371
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	198, 254
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	439
Bst4CI	ACNGT	4 cut(s)	232, 629, 685, 700
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	113, 333
BstEII	GGTNACC	1 cut(s)	779
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 763
BstNSI	RCATGY	1 cut(s)	29
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	364, 422, 523
BsuI	GTATCC	2 cut(s)	51, 367
BsuRI	GGCC	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	511
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	29, 105, 541
CviAII	CATG	6 cut(s)	26, 85, 191, 260, 502, 760
CviQI	GTAC	3 cut(s)	29, 105, 541
DdeI	CTNAG	2 cut(s)	113, 333
EaeI	YGGCCR	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	254
Eco47III	AGCGCT	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	779
EcoO65I	GGTNACC	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	6 cut(s)	29, 88, 194, 263, 505, 763
FatI	CATG	6 cut(s)	25, 84, 190, 259, 501, 759
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	3 cut(s)	353, 436, 537
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	353, 436, 537
FspBI	CTAG	5 cut(s)	32, 108, 417, 647, 785
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	3 cut(s)	353, 436, 537
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	3 cut(s)	161, 255, 371
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	6 cut(s)	29, 88, 194, 263, 505, 763
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	7, 115
HpaII	CCGG	3 cut(s)	161, 255, 371
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	171, 486, 543
Hpy188I	TCNGA	3 cut(s)	114, 125, 462
Hpy188III	TCNNGA	2 cut(s)	517, 760
Hpy8I	GTNNAC	3 cut(s)	171, 486, 543
Hpy99I	CGWCG	2 cut(s)	158, 484
HpyAV	CCTTC	5 cut(s)	241, 415, 519, 562, 725
HpyCH4III	ACNGT	4 cut(s)	232, 629, 685, 700
HpyCH4IV	ACGT	3 cut(s)	153, 482, 488
HpyCH4V	TGCA	5 cut(s)	80, 88, 224, 352, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 763
HpyF3I	CTNAG	2 cut(s)	113, 333
HpySE526I	ACGT	3 cut(s)	153, 482, 488
Hsp92II	CATG	6 cut(s)	29, 88, 194, 263, 505, 763
HspAI	GCGC	1 cut(s)	644
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	7 cut(s)	174, 268, 279, 281, 384, 452, 502
Lsp1109I	GCAGC	3 cut(s)	364, 422, 523
LweI	GCATC	3 cut(s)	211, 316, 523
MaeI	CTAG	5 cut(s)	32, 108, 417, 647, 785
MaeII	ACGT	3 cut(s)	153, 482, 488
MaeIII	GTNAC	4 cut(s)	554, 589, 705, 779
MboII	GAAGA	2 cut(s)	577, 671
MhlI	GDGCHC	2 cut(s)	198, 254
MluCI	AATT	5 cut(s)	242, 273, 285, 388, 693
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	36, 194, 232, 487, 631, 668
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	4 cut(s)	426, 560, 692, 793
MslI	CAYNNNNRTG	2 cut(s)	93, 191
MspI	CCGG	3 cut(s)	161, 255, 371
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	536, 763
NciI	CCSGG	1 cut(s)	371
NlaIII	CATG	6 cut(s)	29, 88, 194, 263, 505, 763
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	1 cut(s)	759
PciI	ACATGT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	354, 437, 538
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PscI	ACATGT	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	779
PspN4I	GGNNCC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	30, 106, 542
RsaNI	GTAC	3 cut(s)	29, 105, 541
RseI	CAYNNNNRTG	2 cut(s)	93, 191
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	426, 560, 692, 793
SatI	GCNGC	3 cut(s)	353, 436, 537
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	198, 254
SfaNI	GCATC	3 cut(s)	211, 316, 523
SfcI	CTRYAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	93, 191
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	5 cut(s)	242, 273, 285, 388, 693
SspI	AATATT	2 cut(s)	75, 496
SspMI	CTAG	5 cut(s)	32, 108, 417, 647, 785
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	4 cut(s)	232, 629, 685, 700
TaiI	ACGT	3 cut(s)	156, 485, 491
TaqI	TCGA	4 cut(s)	10, 170, 316, 479
TasI	AATT	5 cut(s)	242, 273, 285, 388, 693
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	4 cut(s)	426, 560, 692, 793
Tru9I	TTAA	4 cut(s)	426, 560, 692, 793
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	3 cut(s)	352, 435, 536
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	5 cut(s)	20, 73, 146, 179, 776
TspGWI	ACGGA	1 cut(s)	764
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	5 cut(s)	32, 108, 417, 647, 785
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.