Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

21108932 .. 21109411

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1096300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATCAATTGGCTAATCAACTTAAGTCCACCGACCACTCCTCACAGCTGTTTGCGTTGCCCAGGGGGCAAAGAGTTCAAGCGAAAGGGGAAAGCACTTTTGATATTGACAAGGTTAATACATTTTTGTCCTTATTCTTGGCCAAGGGAATGCTGAGCATAGCATGCAAATTGTTTGAGATTTTCAGTGAACTTGGTGAAAACCCCGTGAGTTATACTTATAATTCGATGATGAGTTCGTTCGTCAAGAAGCACTACTTCAATGAGGCATGGGGTGTACTCAATGAAATGGGAGAAAAGGTTTGCCCCACAGACATAGCTACATACAATGTGATAATTCAAGGCTTGGGGAAGATGGGTAGAGCGGATCTGGCTAGTTCTGTCCTGGATAAGCTAATTAAGCAGGGTGGTTATCTTGAAGTGGTTATGTACAACACCTTGATTAATGCACTAGGGAAGGCAGCAGGATTGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

160

Amino Acids

17.56

Weight (kDa)

7.72

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 118	5.9e-13	PPR repeat family
PPR_2	PF13041	105 - 153	5.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	2 cut(s)	12, 375
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	2 cut(s)	279, 431
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	80, 262, 341, 419
AjnI	CCWGG	2 cut(s)	62, 384
AluBI	AGCT	3 cut(s)	49, 320, 394
AluI	AGCT	3 cut(s)	49, 320, 394
AlwI	GGATC	2 cut(s)	12, 375
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	64, 386
BfaI	CTAG	2 cut(s)	375, 452
BfrI	CTTAAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	462
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	64, 386
BmrFI	CCNGG	2 cut(s)	64, 386
Bpu1102I	GCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	62, 63, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
BseBI	CCWGG	2 cut(s)	64, 386
BseDI	CCNNGG	3 cut(s)	62, 63, 144
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	473
BshFI	GGCC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	4, 367
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	147
BspPI	GGATC	2 cut(s)	12, 375
BspTI	CTTAAG	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	62, 63, 144
BssMI	GATC	2 cut(s)	4, 367
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	64, 386
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	7, 370
BstMBI	GATC	2 cut(s)	4, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 165, 371, 400
BstNI	CCWGG	2 cut(s)	64, 386
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	62, 384
BstV1I	GCAGC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	278, 430
CviAII	CATG	2 cut(s)	165, 270
CviJI	RGCY	7 cut(s)	14, 49, 143, 320, 345, 374, 394
CviKI_1	RGCY	7 cut(s)	14, 49, 143, 320, 345, 374, 394
CviQI	GTAC	2 cut(s)	278, 430
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	6, 369
DpnII	GATC	2 cut(s)	4, 367
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	62, 384
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	168, 273
FaiI	YATR	8 cut(s)	161, 166, 216, 222, 271, 317, 325, 428
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	2 cut(s)	164, 269
Fnu4HI	GCNGC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	2 cut(s)	375, 452
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	168, 273
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	30, 191, 278
Hpy188III	TCNNGA	2 cut(s)	247, 416
Hpy8I	GTNNAC	3 cut(s)	30, 191, 278
HpyAV	CCTTC	1 cut(s)	451
HpyCH4V	TGCA	2 cut(s)	168, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 165, 371, 400
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	168, 273
Kzo9I	GATC	2 cut(s)	4, 367
LpnPI	CCDG	7 cut(s)	49, 76, 356, 371, 389, 398, 450
Lsp1109I	GCAGC	1 cut(s)	473
MaeI	CTAG	2 cut(s)	375, 452
MalI	GATC	2 cut(s)	6, 369
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	2 cut(s)	4, 367
MboII	GAAGA	1 cut(s)	364
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	5 cut(s)	8, 170, 223, 336, 396
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	2 cut(s)	52, 259
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	4 cut(s)	24, 117, 399, 444
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	49
MspCI	CTTAAG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	64, 386
MunI	CAATTG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	2 cut(s)	64, 386
MwoI	GCNNNNNNNGC	4 cut(s)	67, 165, 371, 400
NdeII	GATC	2 cut(s)	4, 367
NlaIII	CATG	2 cut(s)	168, 273
NspI	RCATGY	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	168
PasI	CCCWGGG	1 cut(s)	63
PctI	GAATGC	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	463
PshBI	ATTAAT	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	62, 384
PspGI	CCWGG	2 cut(s)	62, 384
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	279, 431
RsaNI	GTAC	2 cut(s)	278, 430
SaqAI	TTAA	4 cut(s)	24, 117, 399, 444
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	4, 367
ScrFI	CCNGG	2 cut(s)	64, 386
SetI	ASST	6 cut(s)	51, 117, 303, 322, 396, 440
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	5 cut(s)	8, 170, 223, 336, 396
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	2 cut(s)	375, 452
StyD4I	CCNGG	2 cut(s)	62, 384
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	8, 170, 223, 336, 396
TatI	WGTACW	2 cut(s)	277, 429
Tru1I	TTAA	4 cut(s)	24, 117, 399, 444
Tru9I	TTAA	4 cut(s)	24, 117, 399, 444
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	444
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	2 cut(s)	375, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.