Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12885756 .. 12886598

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCGCCATGGAAGGCCTTTCCTGGTCAAAGACCACCACCACGACGGCGCCTCCCAGCTGGGAGACATACTGGCCACCATCACCAAGACCCTCTCAACCTCCGGCACCCGCAACCTCCCGGACCCCCACACCCTTCCGCTCTCCGAGCCCATCCTCTTCCAAATCCTCCGCGCCCAGTCCCTCCACCCCTCCAAAAAACTCGGCTTTTTCAAATGGTGCTCTCTCACGCATAACATCAAACACTCGGCGCGCACCTACTCCCACATCCTCCGCACCGCCTCCCGCTCGGGATTCCTCCACGAGGTCCCTCAATTGCTTCACTCCATGAAGGAGGACGGCGTCGTGGTCGATTCCCAGACCTTCAAAGCCCTGCTCGACGCGTTTATCCGGTCCGGTAAGTTCGATTACGCGCTTGAAATTTTGGATATTATGGAAGATGTTGGTGCTGGGTTGAACACCGATATGTATAACTCGGTTCTTGTTGCTCTGGTTAGGAAAAACCGGGTGGGTTTGGCCATGGCCATTTTGTTTAAGCTTCTGGAGGGAGGGGATTCGACCCAGGTGCCGAATTCGATTGCCTGCAATGAGTTGCTGGTTGCTCTTAGAAAATCTGAAGTGAGGGTTGAGTTTAAGCAAGTTTTTAATAAGCTTAGAGAGAGCGAGGGGTTTGAGATGGGTACTTGGGGGTATAATATTTGCATTCATGCATTTGGGTGTTGGGGTGATTTGGGTACTAGTCTGAGTCTGTTCAGAGGAATGAAGACTCTAACTTGGATTATGTCGGGCCGGATTTGTCTACATATAATAGCCTCGTTCATGGGCTCTGCTTTGTGGGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

281

Amino Acids

31.28

Weight (kDa)

9.11

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	88 - 183	1.9e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	105 - 163	1.4e-07	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	47, 104, 562
AccBSI	CCGCTC	2 cut(s)	139, 285
AccI	GTMKAC	1 cut(s)	796
AccII	CGCG	4 cut(s)	171, 250, 380, 410
AciI	CCGC	6 cut(s)	109, 137, 169, 271, 276, 283
AcoI	YGGCCR	3 cut(s)	72, 513, 519
AcsI	RAATTY	2 cut(s)	417, 568
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	2 cut(s)	48, 339
AfaI	GTAC	2 cut(s)	679, 733
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	211, 364, 416, 454
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	21, 558
AluBI	AGCT	3 cut(s)	58, 535, 649
AluI	AGCT	3 cut(s)	58, 535, 649
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	5 cut(s)	14, 72, 513, 519, 784
ApoI	RAATTY	2 cut(s)	417, 568
AspLEI	GCGC	6 cut(s)	6, 50, 173, 250, 252, 412
AspS9I	GGNCC	4 cut(s)	121, 304, 390, 784
AsuC2I	CCSGG	2 cut(s)	119, 503
AsuHPI	GGTGA	2 cut(s)	73, 734
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	3 cut(s)	121, 304, 390
BalI	TGGCCA	3 cut(s)	74, 515, 521
BanI	GGYRCC	3 cut(s)	47, 104, 562
BanII	GRGCYC	2 cut(s)	150, 824
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	3 cut(s)	86, 158, 667
BceAI	ACGGC	2 cut(s)	61, 352
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	2 cut(s)	23, 560
BcnI	CCSGG	2 cut(s)	119, 503
BcoDI	GTCTC	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	51
Bme1390I	CCNGG	4 cut(s)	23, 119, 503, 560
Bme18I	GGWCC	3 cut(s)	121, 304, 390
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	4 cut(s)	121, 304, 390, 784
BmiI	GGNNCC	5 cut(s)	49, 106, 123, 306, 564
BmrFI	CCNGG	4 cut(s)	23, 119, 503, 560
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	767
BpmI	CTGGAG	1 cut(s)	560
BpuMI	CCSGG	2 cut(s)	119, 503
BsaHI	GRCGYC	2 cut(s)	48, 339
BsaJI	CCNNGG	3 cut(s)	7, 516, 558
BsaWI	WCCGGW	2 cut(s)	387, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	75, 175
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	23, 560
BseDI	CCNNGG	3 cut(s)	7, 516, 558
BseGI	GGATG	2 cut(s)	150, 264
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	2 cut(s)	75, 175
BsePI	GCGCGC	1 cut(s)	248
BseYI	CCCAGC	3 cut(s)	54, 58, 446
Bsh1236I	CGCG	4 cut(s)	171, 250, 380, 410
BshFI	GGCC	5 cut(s)	16, 74, 515, 521, 786
BshNI	GGYRCC	3 cut(s)	47, 104, 562
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	6 cut(s)	102, 119, 388, 393, 502, 787
BslFI	GGGAC	2 cut(s)	163, 290
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	163, 290
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	5 cut(s)	16, 74, 515, 521, 786
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	3 cut(s)	150, 221, 824
Bsp19I	CCATGG	2 cut(s)	7, 516
BspACI	CCGC	6 cut(s)	109, 137, 169, 271, 276, 283
BspANI	GGCC	5 cut(s)	16, 74, 515, 521, 786
BspCNI	CTCAG	1 cut(s)	732
BspFNI	CGCG	4 cut(s)	171, 250, 380, 410
BspLI	GGNNCC	5 cut(s)	49, 106, 123, 306, 564
BspT107I	GGYRCC	3 cut(s)	47, 104, 562
BsrBI	CCGCTC	2 cut(s)	139, 285
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	75, 175
BssECI	CCNNGG	3 cut(s)	7, 516, 558
BssHII	GCGCGC	1 cut(s)	248
BssNI	GRCGYC	2 cut(s)	48, 339
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	2 cut(s)	7, 516
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	23, 560
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	2 cut(s)	48, 339
BstC8I	GCNNGC	2 cut(s)	250, 580
BstDEI	CTNAG	3 cut(s)	602, 650, 740
BstDSI	CCRYGG	2 cut(s)	7, 516
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	150, 264
BstFNI	CGCG	4 cut(s)	171, 250, 380, 410
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	6 cut(s)	6, 50, 173, 250, 252, 412
BstMAI	GTCTC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	23, 560
BstSCI	CCNGG	4 cut(s)	21, 117, 501, 558
BstUI	CGCG	4 cut(s)	171, 250, 380, 410
BstV2I	GAAGAC	1 cut(s)	767
BsuRI	GGCC	5 cut(s)	16, 74, 515, 521, 786
BtgI	CCRYGG	2 cut(s)	7, 516
BtsCI	GGATG	2 cut(s)	150, 264
Cac8I	GCNNGC	2 cut(s)	250, 580
CfoI	GCGC	6 cut(s)	6, 50, 173, 250, 252, 412
Cfr13I	GGNCC	4 cut(s)	121, 304, 390, 784
CpoI	CGGWCCG	1 cut(s)	390
CseI	GACGC	2 cut(s)	328, 386
Csp6I	GTAC	2 cut(s)	678, 732
CspI	CGGWCCG	1 cut(s)	390
CviAII	CATG	5 cut(s)	8, 325, 517, 704, 817
CviQI	GTAC	2 cut(s)	678, 732
DdeI	CTNAG	3 cut(s)	602, 650, 740
DinI	GGCGCC	1 cut(s)	49
EaeI	YGGCCR	3 cut(s)	72, 513, 519
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	2 cut(s)	7, 516
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	150, 824
Eco47I	GGWCC	3 cut(s)	121, 304, 390
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	286
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	21, 558
EcoT14I	CCWWGG	2 cut(s)	7, 516
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	2 cut(s)	150, 824
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	2 cut(s)	7, 516
FaeI	CATG	5 cut(s)	11, 328, 520, 707, 820
FaqI	GGGAC	2 cut(s)	163, 290
FatI	CATG	5 cut(s)	7, 324, 516, 703, 816
FauI	CCCGC	2 cut(s)	116, 290
FblI	GTMKAC	1 cut(s)	796
FokI	GGATG	2 cut(s)	137, 251
FriOI	GRGCYC	2 cut(s)	150, 824
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	6 cut(s)	5, 49, 172, 249, 251, 411
GsaI	CCCAGC	3 cut(s)	58, 62, 450
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	5 cut(s)	16, 74, 515, 521, 786
HapII	CCGG	6 cut(s)	102, 119, 388, 393, 502, 787
HgaI	GACGC	2 cut(s)	328, 386
HhaI	GCGC	6 cut(s)	6, 50, 173, 250, 252, 412
Hin1I	GRCGYC	2 cut(s)	48, 339
Hin1II	CATG	5 cut(s)	11, 328, 520, 707, 820
Hin6I	GCGC	6 cut(s)	4, 48, 171, 248, 250, 410
HinP1I	GCGC	6 cut(s)	4, 48, 171, 248, 250, 410
HindIII	AAGCTT	2 cut(s)	533, 647
HinfI	GANTC	5 cut(s)	291, 350, 551, 742, 763
HpaII	CCGG	6 cut(s)	102, 119, 388, 393, 502, 787
HphI	GGTGA	2 cut(s)	73, 734
Hpy166II	GTNNAC	1 cut(s)	797
Hpy188I	TCNGA	4 cut(s)	145, 613, 741, 752
Hpy188III	TCNNGA	2 cut(s)	288, 539
Hpy8I	GTNNAC	1 cut(s)	797
Hpy99I	CGWCG	3 cut(s)	47, 344, 380
HpyAV	CCTTC	5 cut(s)	6, 143, 322, 370, 831
HpyCH4V	TGCA	3 cut(s)	582, 699, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	3 cut(s)	602, 650, 740
Hsp92I	GRCGYC	2 cut(s)	48, 339
Hsp92II	CATG	5 cut(s)	11, 328, 520, 707, 820
HspAI	GCGC	6 cut(s)	4, 48, 171, 248, 250, 410
KasI	GGCGCC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	735
MbiI	CCGCTC	2 cut(s)	139, 285
MboII	GAAGA	3 cut(s)	148, 446, 772
MfeI	CAATTG	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	150, 221, 824
MlsI	TGGCCA	3 cut(s)	74, 515, 521
MluCI	AATT	3 cut(s)	311, 417, 568
MluI	ACGCGT	1 cut(s)	378
MluNI	TGGCCA	3 cut(s)	74, 515, 521
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	751, 757
Mox20I	TGGCCA	3 cut(s)	74, 515, 521
Mph1103I	ATGCAT	1 cut(s)	709
MscI	TGGCCA	3 cut(s)	74, 515, 521
MseI	TTAA	3 cut(s)	531, 630, 642
MslI	CAYNNNNRTG	2 cut(s)	461, 712
Msp20I	TGGCCA	3 cut(s)	74, 515, 521
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	6 cut(s)	102, 119, 388, 393, 502, 787
MspR9I	CCNGG	4 cut(s)	23, 119, 503, 560
MunI	CAATTG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	2 cut(s)	23, 560
MvnI	CGCG	4 cut(s)	171, 250, 380, 410
MwoI	GCNNNNNNNGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	48
NciI	CCSGG	2 cut(s)	119, 503
NcoI	CCATGG	2 cut(s)	7, 516
NlaIII	CATG	5 cut(s)	11, 328, 520, 707, 820
NlaIV	GGNNCC	5 cut(s)	49, 106, 123, 306, 564
NmeAIII	GCCGAG	2 cut(s)	180, 224
NsiI	ATGCAT	1 cut(s)	709
PauI	GCGCGC	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	16
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	291, 350, 551
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	117
PleI	GAGTC	2 cut(s)	750, 757
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	2 cut(s)	750, 757
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	21, 558
PspFI	CCCAGC	3 cut(s)	54, 58, 446
PspGI	CCWGG	2 cut(s)	21, 558
PspN4I	GGNNCC	5 cut(s)	49, 106, 123, 306, 564
PspPI	GGNCC	4 cut(s)	121, 304, 390, 784
PspPPI	RGGWCCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	338
PteI	GCGCGC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	679, 733
RsaNI	GTAC	2 cut(s)	678, 732
RseI	CAYNNNNRTG	2 cut(s)	461, 712
Rsr2I	CGGWCCG	1 cut(s)	390
RsrII	CGGWCCG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	531, 630, 642
Sau96I	GGNCC	4 cut(s)	121, 304, 390, 784
SchI	GAGTC	2 cut(s)	751, 757
ScrFI	CCNGG	4 cut(s)	23, 119, 503, 560
SduI	GDGCHC	3 cut(s)	150, 221, 824
SfoI	GGCGCC	1 cut(s)	49
SinI	GGWCC	3 cut(s)	121, 304, 390
SmiMI	CAYNNNNRTG	2 cut(s)	461, 712
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	3 cut(s)	311, 417, 568
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	6 cut(s)	109, 137, 169, 271, 276, 283
SspDI	GGCGCC	1 cut(s)	47
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	1 cut(s)	735
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	21, 117, 501, 558
StyI	CCWWGG	2 cut(s)	7, 516
TaqI	TCGA	5 cut(s)	348, 375, 402, 554, 572
TasI	AATT	3 cut(s)	311, 417, 568
TfiI	GAWTC	3 cut(s)	291, 350, 551
Tru1I	TTAA	3 cut(s)	531, 630, 642
Tru9I	TTAA	3 cut(s)	531, 630, 642
TspDTI	ATGAA	4 cut(s)	341, 692, 773, 805
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	3 cut(s)	121, 304, 390
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	2 cut(s)	417, 568
XmiI	GTMKAC	1 cut(s)	796
XspI	CTAG	1 cut(s)	735
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.