Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192272.1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 700

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ctcgagtctttggctctttgcgacccatgaagtgagaaagatcaaatctttatatgttcttggaaatgcaatgcgccatggaaggcctctattccaagccaaaccccacatcggcgctgctgctgcttctgaacttggagacatactcctggtggcctccatcaccaagaccctctcccagtccggcacccgcaacctcccccaccctcctcctctctccgaccctctcctcctccaaatcctccgcacccaatccctccacccctccaagaaactcgacttcttcaaatggtcctctctcacccattccatcaagcactcccccgccactttctcccacatcctccgcaccgcctgccgcgccgggttcctctccgaaatcccgggactacttaacatcatgaaacaacatgctgtaatggtcgattccggaaccttcaagtctttgctggacgccttcatcagggcaggtaagtttgacatggcaatcgaaattttagacattatgcaaggactgggtgctgagctgagtacggatatgtacaactcggtgttggttgctttggttaggaagggtcagttgggtttggctatgtctattctggttaagcttctagaaggtgggtcttctcaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

212

Amino Acids

23.09

Weight (kDa)

9.83

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	186
AccII	CGCG	1 cut(s)	361
AccIII	TCCGGA	1 cut(s)	429
AciI	CCGC	6 cut(s)	191, 245, 325, 347, 352, 359
AcsI	RAATTY	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	454
AfaI	GTAC	2 cut(s)	533, 543
AfiI	CCNNNNNNNGG	2 cut(s)	111, 463
AgsI	TTSAA	2 cut(s)	287, 440
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	2 cut(s)	527, 611
AluI	AGCT	2 cut(s)	527, 611
Alw26I	GTCTC	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	2, 383
Aor13HI	TCCGGA	1 cut(s)	429
AoxI	GGCC	2 cut(s)	84, 154
ApeKI	GCWGC	3 cut(s)	117, 120, 123
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	3 cut(s)	76, 117, 363
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	3 cut(s)	365, 384, 385
AsuHPI	GGTGA	2 cut(s)	155, 293
AvaI	CYCGRG	2 cut(s)	2, 383
AvaII	GGWCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	619
BbvI	GCAGC	3 cut(s)	104, 107, 110
BccI	CCATC	2 cut(s)	168, 318
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	3 cut(s)	365, 384, 385
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	459
BisI	GCNGC	4 cut(s)	118, 121, 124, 359
BlpI	GCTNAGC	1 cut(s)	523
BlsI	GCNGC	4 cut(s)	119, 122, 125, 360
Bme1390I	CCNGG	4 cut(s)	150, 365, 384, 385
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	2 cut(s)	2, 383
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	188, 369, 434
BmrFI	CCNGG	4 cut(s)	150, 365, 384, 385
BmrI	ACTGGG	2 cut(s)	173, 525
BmuI	ACTGGG	2 cut(s)	173, 525
BpiI	GAAGAC	1 cut(s)	619
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu1102I	GCTNAGC	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	616
BpuMI	CCSGG	3 cut(s)	365, 384, 385
BsaHI	GRCGYC	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	77, 383
BsaWI	WCCGGW	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 463
Bse1I	ACTGG	2 cut(s)	179, 520
Bse3DI	GCAATG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	77, 383
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	111, 463
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	514, 519
BseNI	ACTGG	2 cut(s)	179, 520
BseRI	GAGGAG	4 cut(s)	199, 202, 219, 222
BseXI	GCAGC	3 cut(s)	104, 107, 110
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	86, 156
BshNI	GGYRCC	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	2, 383
BsiSI	CCGG	4 cut(s)	184, 364, 384, 430
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	111, 463
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	86, 156
BsoBI	CYCGRG	2 cut(s)	2, 383
Bsp13I	TCCGGA	1 cut(s)	429
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	523
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	6 cut(s)	191, 245, 325, 347, 352, 359
BspANI	GGCC	2 cut(s)	86, 156
BspCNI	CTCAG	2 cut(s)	515, 520
BspEI	TCCGGA	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	188, 369, 434
BspMI	ACCTGC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	179, 520
BssECI	CCNNGG	2 cut(s)	77, 383
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	523, 528
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	3 cut(s)	76, 117, 363
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 355, 360
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	4 cut(s)	148, 363, 382, 383
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	104, 107, 110
BstV2I	GAAGAC	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	86, 156
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	356
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	3 cut(s)	76, 117, 363
Cfr13I	GGNCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	383
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	532, 542
CviAII	CATG	5 cut(s)	27, 78, 401, 411, 482
CviJI	RGCY	7 cut(s)	14, 86, 99, 156, 527, 591, 611
CviKI_1	RGCY	7 cut(s)	14, 86, 99, 156, 527, 591, 611
CviQI	GTAC	2 cut(s)	532, 542
DdeI	CTNAG	2 cut(s)	523, 528
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	2 cut(s)	2, 383
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	5 cut(s)	30, 81, 404, 414, 485
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	5 cut(s)	26, 77, 400, 410, 481
FauI	CCCGC	2 cut(s)	198, 332
Fnu4HI	GCNGC	4 cut(s)	118, 121, 124, 359
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	118, 121, 124, 359
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	3 cut(s)	75, 116, 362
GluI	GCNGC	4 cut(s)	118, 121, 124, 359
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	86, 156
HapII	CCGG	4 cut(s)	184, 364, 384, 430
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	3 cut(s)	76, 117, 363
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	30, 81, 404, 414, 485
Hin6I	GCGC	3 cut(s)	74, 115, 361
HinP1I	GCGC	3 cut(s)	74, 115, 361
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	2 cut(s)	5, 426
HpaII	CCGG	4 cut(s)	184, 364, 384, 430
HphI	GGTGA	2 cut(s)	155, 293
Hpy188I	TCNGA	3 cut(s)	131, 221, 377
Hpy188III	TCNNGA	3 cut(s)	401, 430, 615
HpyAV	CCTTC	5 cut(s)	76, 446, 467, 566, 612
HpyCH4V	TGCA	2 cut(s)	69, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 355, 360
HpyF3I	CTNAG	2 cut(s)	523, 528
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	5 cut(s)	30, 81, 404, 414, 485
HspAI	GCGC	3 cut(s)	74, 115, 361
Kpn2I	TCCGGA	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	40
Lsp1109I	GCAGC	3 cut(s)	104, 107, 110
MaeI	CTAG	1 cut(s)	615
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	275, 619
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	244
MroI	TCCGGA	1 cut(s)	429
MseI	TTAA	2 cut(s)	394, 607
MspI	CCGG	4 cut(s)	184, 364, 384, 430
MspR9I	CCNGG	4 cut(s)	150, 365, 384, 385
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	123, 355, 360
NciI	CCSGG	3 cut(s)	365, 384, 385
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	30, 81, 404, 414, 485
NlaIV	GGNNCC	3 cut(s)	188, 369, 434
NspI	RCATGY	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	2
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	4 cut(s)	119, 122, 125, 360
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	188, 369, 434
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	2 cut(s)	533, 543
RsaNI	GTAC	2 cut(s)	532, 542
SaqAI	TTAA	2 cut(s)	394, 607
SatI	GCNGC	4 cut(s)	118, 121, 124, 359
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	150, 365, 384, 385
SetI	ASST	6 cut(s)	199, 438, 473, 529, 613, 623
Sfr274I	CTCGAG	1 cut(s)	2
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	2
SmaI	CCCGGG	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	2, 631
SmoI	CTYRAG	2 cut(s)	2, 631
Sse9I	AATT	1 cut(s)	493
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	6 cut(s)	191, 245, 325, 347, 352, 359
SspMI	CTAG	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	148, 363, 382, 383
StyI	CCWWGG	1 cut(s)	77
TaqI	TCGA	4 cut(s)	3, 277, 424, 490
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	2 cut(s)	394, 607
Tru9I	TTAA	2 cut(s)	394, 607
TseI	GCWGC	3 cut(s)	117, 120, 123
TspDTI	ATGAA	3 cut(s)	43, 417, 449
TspGWI	ACGGA	1 cut(s)	549
TspMI	CCCGGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	493
XbaI	TCTAGA	1 cut(s)	614
XceI	RCATGY	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	2
XmaI	CCCGGG	1 cut(s)	383
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.