Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

54018387 .. 54021104

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGCGCCATGGAAGGCCTCTATTCCAAGCCAAACCCCACATCGGCGCTGCTGCTGCTTCTGAACTTGGAGACATCCTCCTGGTGGCCTCCATCACCAAGACCCTCTCCCAGTCCGGCACCCGCAACCTCCCCCACCCTCCTCCTCTCTCCGACCCTCTCCTCCTCCAAATCCTCCGCACCCAATCCCTCCACCCCTCCAAGAAACTCGACTTCTTCAAATGGTCCTCTCTCACCCATTCCATCAAACACTCCCCCGCCACTTTCTCCCACATCCTCCGCACCGCCTGCCGCGCCGGGTTCCTCTCCGAAATCCCGGGACTACTTAACATCATGAAACAACATGCTGTAATGGTCGATTCCGGAACCTTCAAGTCTTTGCTGGACGCCTTCATCAGGGCAGGTAAGTTTGACATGGCAATCGAAATTTTAGACATTATGCAAGGACTGGGTGCTGAGCTGAGTACGGATATGTACAACTCGGTGTTGGTTGCTTTGGTTAGGAAGGGTCAGTTGGGTTTGGCTATGTCTATTCTGGTTAAGCTTCTAGAAGGTGGGTCTTCTCAAGTACCCAATTGCATTGCCTGTAATGAGTTGTTGGTGGGTCTTAGGAAAGGTGACATGAGGGTAGAGTTTAAGCAGGTGTTTGATAAGCTTAGGGGGAATGAGTGGTTTGAGATGGATACTTGGGGTTATAATATTTGTATTCATGCGTTTGGGTGTTGGGGTGATCTGGGTACTAGTTTGAGTCTGTTTAAGGAGATGAAAGAGTTGAACTCCGACTGGGTTTTTCCTGACTTGTCTACTTATAATAGCCTCATTCATGTGCTGTGTTTGGTTGGGAAGGTGGATGATGCAGTTACTGTGTGGGAGGAGTTGAAGTGTTCGGGTCATGAGCCGGATGCCATTACATATCGGATTCTTATTCAGGGGTGTTGTAAGTGTTATCGAATAGAGGAAGCTACCAAGATTTTTAGTGAAATGCAGAACAATGGGTACAATCCGGATACGGTTGTTTATAATTCGTTGATGGATGGGTTGTTCAAGGCGAGGAAAGTTAATGAAGGGTGTCAGATGTTTGAGAGGATGGTTCAGTATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTGATTGATGGGTTGTTTAGGAATGCAAGGGCCGAGGCTGCTTACACTATATTTTGTGACTTGAAGAAGAAAGGTCAGTTTGTGGATGGTGTTACGTATAGCATTGTTGCTCTGCAACTTTGTAGGGAGGGTCTGCTCGAGGAGGCGCTAGAATTGGTGGAAGAAATGGAAATGCGAGGCTTTACCGTTGATTTGGTTACTATATCAACACTCATGATTGGGCTGTATAAGCATAGTCGATGGGATTGGACAGACAAGCTCATGAAGCGTATTAGGGATGGTAATCTGCTGCCTAGTGTTCTTAGATGGAAAGTCGATATGGAAGCTACAATGAAAGCTCCACAGAGCAAGAAAAAGGACCTTACACCACTGTTCCCAAGTAAAGGTGATTTCAGCGATGTTTTGAGTCTAATAAGTTCTGCTGCCTCGAAAATGGATGGAGTCATTGAATCAGATGATGCTGGGGTTAAAGATGATAATAATTCGTCTACAGATATTGATCAGTGGTCATCATCTCCACATATGGATCACTTGGCCAATCAATTGAAGTCCACTGACCACGCCTCTCAGCTGTTTTCGCTTTCTAGAGGGCAACGAGTTCAAGCCAATGGAGAAAGCACTTTTGATATTGATATGGTAAATACTTTCTTATCCCTATTTTTGGCCAAGGGGAAGCTGAGCATAGCTTGCAAATTGTTTGAGATTTTCAGTGATGCGGGTGCAAACCCTGTGAGTTACACTTATAATTCCATCTTGAGTTCGTTTGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTGCTCAGTGAAATGGGAGAAAAAGTTTGCCCCACAGATATAGCAACATACAATATGATAATTCAAGGCTTGGGGAAGATGGGAAGGGCCGATCTAGCCAGTAGTGTTCTGGATAAGCTAATGAAGCAGGGTGGTTATCTTGATGTTGTCATGTACAACACCTTGATTAATGCGCTGGGGAAGGCTAACCGGATTGACGATGTAAACAAGCTATTTAAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTCAATACGCTTATTGAAGTTCATAGTAAAGCAGGTCGACTGAAAGATGCGTATAAATTTCTGAAAATGATGCTGGATTCAGGCTGCACACCAAACCATGTCACTGACACCACTTTGGATTTTCTGGGGAAGGAGATTGAGAAATCGAGGTACCAAAAGGCATCATTTGTACGAAATAAGGATGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

791

Amino Acids

88.25

Weight (kDa)

6.64

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	89 - 178	1.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	257 - 311	3.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	262 - 292	1.1e-08	PPR repeat
PPR_2	PF13041	264 - 313	4e-16	PPR repeat family
PPR_1	PF12854	296 - 328	7.1e-10	PPR repeat
PPR	PF01535	302 - 331	1.6e-06	PPR repeat
PPR_2	PF13041	306 - 337	4.9e-06	PPR repeat family
PPR_3	PF13812	322 - 378	1.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	330 - 363	1.3e-07	PPR repeat
PPR_2	PF13041	334 - 382	2.7e-14	PPR repeat family
PPR_2	PF13041	372 - 412	5.3e-09	PPR repeat family
PPR_2	PF13041	416 - 453	3.7e-06	PPR repeat family
PPR_2	PF13041	620 - 668	1.1e-11	PPR repeat family
PPR_3	PF13812	677 - 736	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	689 - 718	7.4e-07	PPR repeat
PPR_2	PF13041	690 - 733	3.2e-15	PPR repeat family
PPR	PF01535	692 - 722	1.1e-07	PPR repeat
PPR_3	PF13812	712 - 763	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	721 - 752	5.1e-10	PPR repeat
PPR_2	PF13041	724 - 767	3.3e-12	PPR repeat family
PPR	PF01535	727 - 757	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	693, 807, 1017, 1872
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	3 cut(s)	389, 628, 2207
Acc65I	GGTACC	1 cut(s)	2334
AccB1I	GGYRCC	2 cut(s)	116, 2334
AccI	GTMKAC	3 cut(s)	800, 1616, 2221
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	2 cut(s)	359, 1000
AciI	CCGC	7 cut(s)	121, 175, 255, 277, 282, 289, 1844
AclWI	GGATC	1 cut(s)	1662
AcoI	YGGCCR	2 cut(s)	1662, 1791
AcsI	RAATTY	2 cut(s)	423, 2240
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	8 cut(s)	463, 473, 567, 736, 995, 2081, 2336, 2355
AfiI	CCNNNNNNNGG	6 cut(s)	41, 82, 393, 1113, 1511, 1789
AhlI	ACTAGT	1 cut(s)	737
AjiI	CACGTC	1 cut(s)	1113
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AloI	GAACNNNNNNTCC	2 cut(s)	1022, 1054
Alw21I	GWGCWC	1 cut(s)	1932
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	1662
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	2 cut(s)	313, 1265
Aor13HI	TCCGGA	2 cut(s)	359, 1000
AoxI	GGCC	6 cut(s)	14, 84, 1158, 1662, 1791, 2013
ApeKI	GCWGC	7 cut(s)	47, 50, 53, 1166, 1417, 1550, 2268
ApoI	RAATTY	2 cut(s)	423, 2240
AseI	ATTAAT	1 cut(s)	2094
Asp718I	GGTACC	1 cut(s)	2334
AspLEI	GCGC	5 cut(s)	6, 47, 293, 1276, 2101
AspS9I	GGNCC	4 cut(s)	222, 1158, 1486, 2013
AsuC2I	CCSGG	3 cut(s)	295, 314, 315
AsuHPI	GGTGA	6 cut(s)	85, 223, 626, 737, 1111, 1526
AvaI	CYCGRG	2 cut(s)	313, 1265
AvaII	GGWCC	2 cut(s)	222, 1486
BaeI	ACNNNNGTAYC	2 cut(s)	996, 1029
BalI	TGGCCA	2 cut(s)	1664, 1793
BanI	GGYRCC	2 cut(s)	116, 2334
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	1932
BbvI	GCAGC	7 cut(s)	34, 37, 40, 1153, 1404, 1537, 2255
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	2 cut(s)	673, 997
BclI	TGATCA	1 cut(s)	1627
BcnI	CCSGG	3 cut(s)	295, 314, 315
BcoDI	GTCTC	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	6 cut(s)	545, 738, 1277, 1422, 1713, 2021
BfmI	CTRYAG	1 cut(s)	1617
BfoI	RGCGCY	2 cut(s)	48, 1277
BfuAI	ACCTGC	3 cut(s)	389, 628, 2207
BfuI	GTATCC	2 cut(s)	673, 997
BisI	GCNGC	8 cut(s)	48, 51, 54, 289, 1167, 1418, 1551, 2269
BlpI	GCTNAGC	2 cut(s)	453, 1805
BlsI	GCNGC	8 cut(s)	49, 52, 55, 290, 1168, 1419, 1552, 2270
Bme1390I	CCNGG	4 cut(s)	80, 295, 314, 315
Bme18I	GGWCC	2 cut(s)	222, 1486
BmeT110I	CYCGRG	2 cut(s)	313, 1265
BmgBI	CACGTC	1 cut(s)	1113
BmgT120I	GGNCC	4 cut(s)	222, 1158, 1486, 2013
BmiI	GGNNCC	4 cut(s)	118, 299, 364, 2336
BmrFI	CCNGG	4 cut(s)	80, 295, 314, 315
BmrI	ACTGGG	3 cut(s)	103, 455, 790
BmsI	GCATC	7 cut(s)	841, 889, 1576, 1831, 2221, 2244, 2354
BmuI	ACTGGG	3 cut(s)	103, 455, 790
BpiI	GAAGAC	1 cut(s)	549
BplI	GAGNNNNNCTC	4 cut(s)	60, 92, 758, 790
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu1102I	GCTNAGC	2 cut(s)	453, 1805
BpuEI	CTTGAG	2 cut(s)	546, 1903
BpuMI	CCSGG	3 cut(s)	295, 314, 315
BsaAI	YACGTR	1 cut(s)	1224
BsaBI	GATNNNNATC	2 cut(s)	1410, 1626
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	7, 313, 1161, 1794
BsaWI	WCCGGW	3 cut(s)	359, 1000, 2115
BsaXI	ACNNNNNCTCC	4 cut(s)	863, 893, 1935, 1965
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 82, 393, 1113, 1511, 1789
Bse1I	ACTGG	4 cut(s)	109, 450, 785, 2025
Bse3DI	GCAATG	1 cut(s)	576
Bse8I	GATNNNNATC	2 cut(s)	1410, 1626
BseAI	TCCGGA	2 cut(s)	359, 1000
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	4 cut(s)	7, 313, 1161, 1794
BseJI	GATNNNNATC	2 cut(s)	1410, 1626
BseLI	CCNNNNNNNGG	6 cut(s)	41, 82, 393, 1113, 1511, 1789
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	5 cut(s)	444, 449, 1709, 1796, 1945
BseNI	ACTGG	4 cut(s)	109, 450, 785, 2025
BseRI	GAGGAG	6 cut(s)	129, 132, 149, 152, 884, 1283
BseXI	GCAGC	7 cut(s)	34, 37, 40, 1153, 1404, 1537, 2255
BseYI	CCCAGC	2 cut(s)	1589, 2101
BsgI	GTGCAG	1 cut(s)	2254
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	6 cut(s)	16, 86, 1160, 1664, 1793, 2015
BshNI	GGYRCC	2 cut(s)	116, 2334
BsiHKAI	GWGCWC	1 cut(s)	1932
BsiHKCI	CYCGRG	2 cut(s)	313, 1265
BsiSI	CCGG	7 cut(s)	114, 294, 314, 360, 896, 1001, 2116
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	6 cut(s)	41, 82, 393, 1113, 1511, 1789
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	6 cut(s)	16, 86, 1160, 1664, 1793, 2015
BsoBI	CYCGRG	2 cut(s)	313, 1265
Bsp1286I	GDGCHC	1 cut(s)	1932
Bsp13I	TCCGGA	2 cut(s)	359, 1000
Bsp1407I	TGTACA	2 cut(s)	471, 2079
Bsp143I	GATC	4 cut(s)	727, 1627, 1654, 2017
Bsp1720I	GCTNAGC	2 cut(s)	453, 1805
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	7 cut(s)	121, 175, 255, 277, 282, 289, 1844
BspANI	GGCC	6 cut(s)	16, 86, 1160, 1664, 1793, 2015
BspCNI	CTCAG	5 cut(s)	445, 450, 1708, 1797, 1944
BspEI	TCCGGA	2 cut(s)	359, 1000
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	4 cut(s)	330, 889, 1341, 1389
BspLI	GGNNCC	4 cut(s)	118, 299, 364, 2336
BspMI	ACCTGC	3 cut(s)	389, 628, 2207
BspPI	GGATC	1 cut(s)	1662
BspT107I	GGYRCC	2 cut(s)	116, 2334
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	2 cut(s)	471, 2079
BsrI	ACTGG	4 cut(s)	109, 450, 785, 2025
BssECI	CCNNGG	4 cut(s)	7, 313, 1161, 1794
BssMI	GATC	4 cut(s)	727, 1627, 1654, 2017
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	7, 1794
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	4 cut(s)	862, 1009, 1315, 1500
Bst6I	CTCTTC	1 cut(s)	2147
BstACI	GRCGYC	1 cut(s)	384
BstAPI	GCANNNNNTGC	2 cut(s)	285, 1815
BstAUI	TGTACA	2 cut(s)	471, 2079
BstBAI	YACGTR	1 cut(s)	1224
BstC8I	GCNNGC	2 cut(s)	286, 1816
BstDEI	CTNAG	8 cut(s)	453, 458, 605, 653, 1430, 1695, 1805, 1931
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	2 cut(s)	48, 1277
BstHHI	GCGC	5 cut(s)	6, 47, 293, 1276, 2101
BstKTI	GATC	4 cut(s)	730, 1630, 1657, 2020
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	727, 1627, 1654, 2017
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	4 cut(s)	78, 293, 312, 313
BstSFI	CTRYAG	1 cut(s)	1617
BstSNI	TACGTA	1 cut(s)	1224
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	7 cut(s)	34, 37, 40, 1153, 1404, 1537, 2255
BstV2I	GAAGAC	1 cut(s)	549
BsuI	GTATCC	2 cut(s)	673, 997
BsuRI	GGCC	6 cut(s)	16, 86, 1160, 1664, 1793, 2015
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	1539
BtrI	CACGTC	1 cut(s)	1113
BtsIMutI	CAGTG	6 cut(s)	1496, 1637, 1680, 1843, 1939, 2286
BveI	ACCTGC	3 cut(s)	389, 628, 2207
Cac8I	GCNNGC	2 cut(s)	286, 1816
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	4 cut(s)	330, 889, 1341, 1389
CfoI	GCGC	5 cut(s)	6, 47, 293, 1276, 2101
Cfr13I	GGNCC	4 cut(s)	222, 1158, 1486, 2013
Cfr9I	CCCGGG	1 cut(s)	313
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	8 cut(s)	462, 472, 566, 735, 994, 2080, 2335, 2354
CviQI	GTAC	8 cut(s)	462, 472, 566, 735, 994, 2080, 2335, 2354
DdeI	CTNAG	8 cut(s)	453, 458, 605, 653, 1430, 1695, 1805, 1931
DpnI	GATC	4 cut(s)	729, 1629, 1656, 2019
DpnII	GATC	4 cut(s)	727, 1627, 1654, 2017
EaeI	YGGCCR	2 cut(s)	1662, 1791
Eam1104I	CTCTTC	1 cut(s)	2147
EarI	CTCTTC	1 cut(s)	2147
Eco105I	TACGTA	1 cut(s)	1224
Eco130I	CCWWGG	2 cut(s)	7, 1794
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	222, 1486
Eco88I	CYCGRG	2 cut(s)	313, 1265
EcoNI	CCTNNNNNAGG	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	1486
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	7, 1794
ErhI	CCWWGG	2 cut(s)	7, 1794
FalI	AAGNNNNNCTT	2 cut(s)	1892, 1924
FaqI	GGGAC	1 cut(s)	330
FauI	CCCGC	3 cut(s)	128, 262, 1837
FauNDI	CATATG	1 cut(s)	1650
FbaI	TGATCA	1 cut(s)	1627
FblI	GTMKAC	3 cut(s)	800, 1616, 2221
Fnu4HI	GCNGC	8 cut(s)	48, 51, 54, 289, 1167, 1418, 1551, 2269
FokI	GGATG	9 cut(s)	59, 257, 860, 911, 1043, 1096, 1226, 1418, 1577
Fsp4HI	GCNGC	8 cut(s)	48, 51, 54, 289, 1167, 1418, 1551, 2269
FspBI	CTAG	6 cut(s)	545, 738, 1277, 1422, 1713, 2021
GlaI	GCGC	5 cut(s)	5, 46, 292, 1275, 2100
GluI	GCNGC	8 cut(s)	48, 51, 54, 289, 1167, 1418, 1551, 2269
GsaI	CCCAGC	2 cut(s)	1593, 2105
HaeII	RGCGCY	2 cut(s)	48, 1277
HaeIII	GGCC	6 cut(s)	16, 86, 1160, 1664, 1793, 2015
HapII	CCGG	7 cut(s)	114, 294, 314, 360, 896, 1001, 2116
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	5 cut(s)	6, 47, 293, 1276, 2101
Hin1I	GRCGYC	1 cut(s)	384
Hin6I	GCGC	5 cut(s)	4, 45, 291, 1274, 2099
HinP1I	GCGC	5 cut(s)	4, 45, 291, 1274, 2099
HincII	GTYRAC	1 cut(s)	2222
HindII	GTYRAC	1 cut(s)	2222
HindIII	AAGCTT	2 cut(s)	539, 650
HinfI	GANTC	8 cut(s)	356, 745, 916, 1534, 1569, 1577, 2261, 2369
HpaII	CCGG	7 cut(s)	114, 294, 314, 360, 896, 1001, 2116
HphI	GGTGA	6 cut(s)	85, 223, 626, 737, 1111, 1526
Hpy166II	GTNNAC	6 cut(s)	801, 1116, 1617, 1680, 2131, 2222
Hpy188I	TCNGA	9 cut(s)	61, 151, 307, 778, 915, 1071, 1131, 1582, 2247
Hpy8I	GTNNAC	6 cut(s)	801, 1116, 1617, 1680, 2131, 2222
Hpy99I	CGWCG	1 cut(s)	1114
HpyCH4III	ACNGT	4 cut(s)	862, 1009, 1315, 1500
HpyCH4IV	ACGT	3 cut(s)	1112, 1118, 1223
HpyCH4V	TGCA	9 cut(s)	439, 576, 854, 982, 1154, 1243, 1818, 1850, 2271
HpyF3I	CTNAG	8 cut(s)	453, 458, 605, 653, 1430, 1695, 1805, 1931
HpySE526I	ACGT	3 cut(s)	1112, 1118, 1223
Hsp92I	GRCGYC	1 cut(s)	384
HspAI	GCGC	5 cut(s)	4, 45, 291, 1274, 2099
Kpn2I	TCCGGA	2 cut(s)	359, 1000
KpnI	GGTACC	1 cut(s)	2338
Ksp22I	TGATCA	1 cut(s)	1627
Kzo9I	GATC	4 cut(s)	727, 1627, 1654, 2017
LmnI	GCTCC	1 cut(s)	1471
Lsp1109I	GCAGC	7 cut(s)	34, 37, 40, 1153, 1404, 1537, 2255
LweI	GCATC	7 cut(s)	841, 889, 1576, 1831, 2221, 2244, 2354
MaeI	CTAG	6 cut(s)	545, 738, 1277, 1422, 1713, 2021
MaeII	ACGT	3 cut(s)	1112, 1118, 1223
MaeIII	GTNAC	8 cut(s)	614, 856, 1184, 1219, 1324, 1862, 2179, 2284
MalI	GATC	4 cut(s)	729, 1629, 1656, 2019
MboI	GATC	4 cut(s)	727, 1627, 1654, 2017
MboII	GAAGA	7 cut(s)	205, 549, 1204, 1207, 1301, 2014, 2164
MfeI	CAATTG	2 cut(s)	571, 1670
MhlI	GDGCHC	1 cut(s)	1932
MlsI	TGGCCA	2 cut(s)	1664, 1793
MluNI	TGGCCA	2 cut(s)	1664, 1793
MlyI	GAGTC	4 cut(s)	754, 1543, 1578, 2363
MmeI	TCCRAC	2 cut(s)	174, 801
Mox20I	TGGCCA	2 cut(s)	1664, 1793
MroI	TCCGGA	2 cut(s)	359, 1000
MscI	TGGCCA	2 cut(s)	1664, 1793
MseI	TTAA	8 cut(s)	324, 537, 633, 753, 1056, 1596, 2094, 2142
MslI	CAYNNNNRTG	1 cut(s)	821
Msp20I	TGGCCA	2 cut(s)	1664, 1793
MspA1I	CMGCKG	1 cut(s)	1699
MspI	CCGG	7 cut(s)	114, 294, 314, 360, 896, 1001, 2116
MspR9I	CCNGG	4 cut(s)	80, 295, 314, 315
MunI	CAATTG	2 cut(s)	571, 1670
Mva1269I	GAATGC	1 cut(s)	1156
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	291
NciI	CCSGG	3 cut(s)	295, 314, 315
NcoI	CCATGG	1 cut(s)	7
NdeI	CATATG	1 cut(s)	1650
NdeII	GATC	4 cut(s)	727, 1627, 1654, 2017
NlaIV	GGNNCC	4 cut(s)	118, 299, 364, 2336
NmeAIII	GCCGAG	1 cut(s)	1186
NmuCI	GTSAC	4 cut(s)	614, 1184, 2179, 2284
NspI	RCATGY	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	1265
PagI	TCATGA	4 cut(s)	330, 889, 1341, 1389
PaqCI	CACCTGC	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	1115
PctI	GAATGC	1 cut(s)	1156
PfeI	GAWTC	4 cut(s)	356, 916, 1577, 2261
PkrI	GCNGC	8 cut(s)	49, 52, 55, 290, 1168, 1419, 1552, 2270
PleI	GAGTC	4 cut(s)	753, 1542, 1577, 2363
PpsI	GAGTC	4 cut(s)	753, 1542, 1577, 2363
Ppu21I	YACGTR	1 cut(s)	1224
PpuMI	RGGWCCY	1 cut(s)	1486
PshBI	ATTAAT	1 cut(s)	2094
PsiI	TTATAA	4 cut(s)	693, 807, 1017, 1872
Psp5II	RGGWCCY	1 cut(s)	1486
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	2 cut(s)	1589, 2101
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	118, 299, 364, 2336
PspPI	GGNCC	4 cut(s)	222, 1158, 1486, 2013
PspPPI	RGGWCCY	1 cut(s)	1486
PspXI	VCTCGAGB	1 cut(s)	1265
PsrI	GAACNNNNNNTAC	2 cut(s)	977, 1009
PstNI	CAGNNNCTG	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	1699
RsaI	GTAC	8 cut(s)	463, 473, 567, 736, 995, 2081, 2336, 2355
RsaNI	GTAC	8 cut(s)	462, 472, 566, 735, 994, 2080, 2335, 2354
RseI	CAYNNNNRTG	1 cut(s)	821
SalI	GTCGAC	1 cut(s)	2220
SaqAI	TTAA	8 cut(s)	324, 537, 633, 753, 1056, 1596, 2094, 2142
SatI	GCNGC	8 cut(s)	48, 51, 54, 289, 1167, 1418, 1551, 2269
Sau3AI	GATC	4 cut(s)	727, 1627, 1654, 2017
Sau96I	GGNCC	4 cut(s)	222, 1158, 1486, 2013
SchI	GAGTC	4 cut(s)	754, 1543, 1578, 2363
ScrFI	CCNGG	4 cut(s)	80, 295, 314, 315
SduI	GDGCHC	1 cut(s)	1932
SfaNI	GCATC	7 cut(s)	841, 889, 1576, 1831, 2221, 2244, 2354
SfcI	CTRYAG	1 cut(s)	1617
Sfr274I	CTCGAG	1 cut(s)	1265
SinI	GGWCC	2 cut(s)	222, 1486
SlaI	CTCGAG	1 cut(s)	1265
SmaI	CCCGGG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	3 cut(s)	561, 1265, 1882
SmoI	CTYRAG	3 cut(s)	561, 1265, 1882
SnaBI	TACGTA	1 cut(s)	1224
SpeI	ACTAGT	1 cut(s)	737
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	7 cut(s)	121, 175, 255, 277, 282, 289, 1844
SspI	AATATT	2 cut(s)	697, 1126
SspMI	CTAG	6 cut(s)	545, 738, 1277, 1422, 1713, 2021
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	78, 293, 312, 313
StyI	CCWWGG	2 cut(s)	7, 1794
TaaI	ACNGT	4 cut(s)	862, 1009, 1315, 1500
TaiI	ACGT	3 cut(s)	1115, 1121, 1226
TatI	WGTACW	2 cut(s)	471, 2079
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	4 cut(s)	356, 916, 1577, 2261
Tru1I	TTAA	8 cut(s)	324, 537, 633, 753, 1056, 1596, 2094, 2142
Tru9I	TTAA	8 cut(s)	324, 537, 633, 753, 1056, 1596, 2094, 2142
TscAI	CASTG	6 cut(s)	1503, 1637, 1687, 1843, 1939, 2293
TseFI	GTSAC	4 cut(s)	614, 1184, 2179, 2284
TseI	GCWGC	7 cut(s)	47, 50, 53, 1166, 1417, 1550, 2268
Tsp45I	GTSAC	4 cut(s)	614, 1184, 2179, 2284
TspGWI	ACGGA	1 cut(s)	479
TspMI	CCCGGG	1 cut(s)	313
TspRI	CASTG	6 cut(s)	1503, 1637, 1687, 1843, 1939, 2293
VpaK11BI	GGWCC	2 cut(s)	222, 1486
VspI	ATTAAT	1 cut(s)	2094
XagI	CCTNNNNNAGG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	423, 2240
XbaI	TCTAGA	2 cut(s)	544, 1712
XceI	RCATGY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2032
XhoI	CTCGAG	1 cut(s)	1265
XmaI	CCCGGG	1 cut(s)	313
XmiI	GTMKAC	3 cut(s)	800, 1616, 2221
XspI	CTAG	6 cut(s)	545, 738, 1277, 1422, 1713, 2021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.