Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

24203351 .. 24203818

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1131700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATTGGCTAATCAACTTAAGTCTGCCGACCACTCCTCGCAGCTGTTTTCATTGTCCACGGAGCTTAAGAGTTCAAGCAAAAGGGGAAAGCACTTTTGATATTGACATGGTTAATACTTTTTTGTCCTTATTCTTGGCCAAGGGAAAGCTGAGCGTAGCATGCAAATTGTTTGAGATTTTCACTTTTAATGCACTAGGGAAGGCTAGCAGAATTGATGAAGTAAACAAGCTCTTTGAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTTAATACACTTATTGAAGTTCATAGCAAAGCAGGTCGGCTAAAAGATGCATATAAGTTTTTGAAAATTATGCTCGGTGCAGGCTGCACCCCGAACCATGTTACTGACACGACTTTAGATTTTCTGGGCAAGGAGATTGAGAAAATGAGGTACCAGAAGGCATCCATGGTGCGCGATAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

156

Amino Acids

17.5

Weight (kDa)

9.08

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	64 - 98	4.1e-09	PPR repeat family
PPR_3	PF13812	77 - 128	5.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	86 - 117	1.4e-10	PPR repeat
PPR_2	PF13041	89 - 132	3.7e-12	PPR repeat family
PPR	PF01535	92 - 122	4.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AccII	CGCG	1 cut(s)	453
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	431
AflII	CTTAAG	2 cut(s)	19, 67
AgsI	TTSAA	3 cut(s)	77, 296, 343
AluBI	AGCT	4 cut(s)	45, 66, 151, 232
AluI	AGCT	4 cut(s)	45, 66, 151, 232
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	42, 363
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	453
AsuNHI	GCTAGC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	54, 350
BfaI	CTAG	2 cut(s)	197, 207
BfrI	CTTAAG	2 cut(s)	19, 67
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	43, 364
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	44, 365
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	2 cut(s)	316, 449
BmtI	GCTAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	59, 141, 444
BseDI	CCNNGG	3 cut(s)	59, 141, 444
BseGI	GGATG	2 cut(s)	440, 466
BseMII	CTCAG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	54, 350
BsgI	GTGCAG	2 cut(s)	349, 378
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	140
Bsp1720I	GCTNAGC	1 cut(s)	152
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	429
BspTI	CTTAAG	2 cut(s)	19, 67
BssECI	CCNNGG	3 cut(s)	59, 141, 444
BssT1I	CCWWGG	2 cut(s)	141, 444
Bst6I	CTCTTC	1 cut(s)	242
BstAFI	CTTAAG	2 cut(s)	19, 67
BstC8I	GCNNGC	3 cut(s)	163, 208, 361
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	2 cut(s)	59, 444
BstF5I	GGATG	2 cut(s)	440, 466
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 238
BstNSI	RCATGY	1 cut(s)	165
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	54, 350
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	2 cut(s)	59, 444
BtsCI	GGATG	2 cut(s)	440, 466
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	3 cut(s)	163, 208, 361
CfoI	GCGC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	109, 162, 377, 445
CviJI	RGCY	9 cut(s)	10, 45, 66, 140, 151, 206, 232, 319, 363
CviKI_1	RGCY	9 cut(s)	10, 45, 66, 140, 151, 206, 232, 319, 363
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	141, 444
EcoT14I	CCWWGG	2 cut(s)	141, 444
EcoT22I	ATGCAT	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	141, 444
FaeI	CATG	4 cut(s)	112, 165, 380, 448
FaiI	YATR	8 cut(s)	110, 163, 303, 331, 333, 350, 378, 446
FatI	CATG	4 cut(s)	108, 161, 376, 444
Fnu4HI	GCNGC	2 cut(s)	43, 364
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	43, 364
FspBI	CTAG	2 cut(s)	197, 207
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	2 cut(s)	43, 364
HaeIII	GGCC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	112, 165, 380, 448
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	59, 226
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	59, 226
HpyAV	CCTTC	2 cut(s)	196, 430
HpyCH4V	TGCA	5 cut(s)	165, 194, 329, 359, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 238
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	112, 165, 380, 448
HspAI	GCGC	1 cut(s)	451
KpnI	GGTACC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	279, 297, 345, 389, 446
Lsp1109I	GCAGC	2 cut(s)	54, 350
LweI	GCATC	2 cut(s)	316, 449
MaeI	CTAG	2 cut(s)	197, 207
MaeIII	GTNAC	2 cut(s)	274, 379
MboII	GAAGA	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	4 cut(s)	4, 167, 213, 345
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	2 cut(s)	48, 420
Mox20I	TGGCCA	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	5 cut(s)	20, 68, 114, 189, 282
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	45
MspCI	CTTAAG	2 cut(s)	19, 67
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	162, 238
NcoI	CCATGG	1 cut(s)	444
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	112, 165, 380, 448
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	44, 365
PspN4I	GGNNCC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	5 cut(s)	20, 68, 114, 189, 282
SatI	GCNGC	2 cut(s)	43, 364
SetI	ASST	6 cut(s)	47, 68, 153, 234, 316, 431
SfaNI	GCATC	2 cut(s)	316, 449
SmlI	CTYRAG	2 cut(s)	19, 67
SmoI	CTYRAG	2 cut(s)	19, 67
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	4 cut(s)	4, 167, 213, 345
SspMI	CTAG	2 cut(s)	197, 207
StyI	CCWWGG	2 cut(s)	141, 444
TasI	AATT	4 cut(s)	4, 167, 213, 345
Tru1I	TTAA	5 cut(s)	20, 68, 114, 189, 282
Tru9I	TTAA	5 cut(s)	20, 68, 114, 189, 282
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	42, 363
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	5 cut(s)	17, 41, 234, 260, 290
TspGWI	ACGGA	1 cut(s)	76
Vha464I	CTTAAG	2 cut(s)	19, 67
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	2 cut(s)	197, 207
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.