Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

21107282 .. 21108877

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1096200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGCGCCATGGAAGGCCTTTCCTGGTCAAAGACCACCGCCACCACGGCGCTTCCCAGCTGGGAGACATACTCCTGGTGGCCGCCATCACCAAGACCCTCTCCACCTCCGGCACTGGCAACCTCCCGGACCCCCACACTCTCCCGCTCTCCGAGCCCCTCCTCTTCCAAATCCTCCGCGCCCAGTCCCTCCGCCCCTCCAAAAAAATCGACTTCTTCAAATGGTGCTCTCTCACGCATAACATCAAACATTCGGCGCGCACCTACTCCCACATCCTCCGCACCGCCTCCCGCGCCGGATTCCTCCACGAGGTCCCTCAATTGCTTCACTCCATGAAGGTGGACGGCTTCGTGGTCGATTCCCAGACCTTCAAATCCCTGCTCGACGCGTTTATCCGGTCCGGTAAGTTCGATTTTGCGCTTGAAATTTTGGATATTATGGAAGATGTTGGTGCTGGGTTGAACACCGATATGTATAACTCGGTTCTTGTTGCTCTGGTTAGGAAAAACCAGGTGGGTTTGGCCATGGCCATTTTGCTTAAGCTTCTGAAGGGAGGGGATTCGACCCAGGTGCCGAATTCGATTGCCTGCAATGAGTTGCTGGTTGCTCTTAGAAAATCTGACCTGAGGATTGAGTTGAAGCAAGTTTTTGATAAGCTTAGAGAGAGTGAGGGGTTTGAGATGGATACTTGGGGGTATAATATTTGCATTCATGCATTTGGATGTTGGGGTGATTTGGGTACTAGTCTGAGTCTGTTCAGAGAGATGAATGACTCTTACTTGGATTACGTCGGGCCGGATTTGTCTACATATAATAGCCTCATTCATGTGCTCTGCTTGGTGGGGAAGGTGAATGATGCACTTACTGTATGGGAGGAATTGAAGGGCTCCGGCCATAAGCCAGACGCAATTACCTATAGAATTCTTATTCAGGGGTGTTGTGAGTGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCGGATACCATTGTTTATAACTTTCTGCTAGATGGGTTATTCAAGGCTGGGAAGGTTAATGATGGCTGCCAGTTATTTGAGAAAATGGTTCAGAATGGGGTGGGAGCCTCGATGCAGACGTATAATATTCTCATGGATGGTTTGTTCAGGAATGGAAGGGCAGAGGCTGCGTACACACTATTTTGTGACTTAAAGAAGAAGGGTCAGTTTGTCGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGAGAGTTTGCTTGAGGAAGCACTAGAATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTGATTTAGTTACTATTTCGTCACTTGTGATTAGGCTGTATAAAGAAGGTCAGTGGGATTGGACGGACAAGCTCATGAAGAACAATAGAGATGATAACCTAGTGCCGAGTGTTCTTAAATGGAAGGTTGATATGGAGGCTTCGCTGAAAAATCCACAGAGAAATAGAAGGGATTATCCATCATTGTTCCCAAGTAAAGGCGACTTGAGTGAGATTATGAGAAAGTCTGCTGAATCAACAGTGGATGGAAACCTAGATTCAGAGGCTGCGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

532

Amino Acids

59.73

Weight (kDa)

6.15

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	90 - 252	2.1e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	107 - 165	2e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	243 - 401	2.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	251 - 312	3.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	265 - 313	1.7e-15	PPR repeat family
PPR_1	PF12854	265 - 293	1.5e-07	PPR repeat
PPR_1	PF12854	297 - 329	9.5e-10	PPR repeat
PPR_3	PF13812	323 - 380	8.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 364	2.5e-08	PPR repeat
PPR_2	PF13041	335 - 383	9.1e-14	PPR repeat family
PPR_2	PF13041	374 - 419	6.1e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1020
AccB1I	GGYRCC	1 cut(s)	568
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	803
AccII	CGCG	4 cut(s)	177, 256, 291, 386
AciI	CCGC	8 cut(s)	37, 81, 143, 175, 190, 277, 282, 289
AcoI	YGGCCR	4 cut(s)	78, 519, 525, 889
AcsI	RAATTY	3 cut(s)	423, 574, 918
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	739, 1175
AfiI	CCNNNNNNNGG	2 cut(s)	307, 1514
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	7 cut(s)	217, 370, 422, 460, 637, 880, 1045
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	4 cut(s)	21, 72, 507, 564
AloI	GAACNNNNNNTCC	2 cut(s)	1130, 1162
AluBI	AGCT	5 cut(s)	58, 541, 655, 988, 1390
AluI	AGCT	5 cut(s)	58, 541, 655, 988, 1390
Alw21I	GWGCWC	2 cut(s)	227, 831
Alw26I	GTCTC	1 cut(s)	57
AlwNI	CAGNNNCTG	2 cut(s)	1169, 1583
AoxI	GGCC	6 cut(s)	14, 78, 519, 525, 791, 889
ApeKI	GCWGC	4 cut(s)	985, 1068, 1169, 1583
ApoI	RAATTY	3 cut(s)	423, 574, 918
AspLEI	GCGC	7 cut(s)	6, 50, 179, 256, 258, 293, 418
AspS9I	GGNCC	4 cut(s)	127, 310, 396, 791
AsuC2I	CCSGG	2 cut(s)	125, 1004
AsuHPI	GGTGA	3 cut(s)	79, 740, 859
AvaII	GGWCC	3 cut(s)	127, 310, 396
AxyI	CCTNAGG	1 cut(s)	623
BaeI	ACNNNNGTAYC	2 cut(s)	999, 1032
BalI	TGGCCA	2 cut(s)	521, 527
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	156, 887
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	227, 831
BbvI	GCAGC	4 cut(s)	997, 1055, 1156, 1570
BccI	CCATC	8 cut(s)	92, 673, 1028, 1058, 1133, 1211, 1504, 1556
BceAI	ACGGC	2 cut(s)	61, 358
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	4 cut(s)	23, 74, 509, 566
BciVI	GTATCC	2 cut(s)	676, 1000
BcnI	CCSGG	2 cut(s)	125, 1004
BcoDI	GTCTC	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	5 cut(s)	741, 1031, 1280, 1418, 1571
BfmI	CTRYAG	1 cut(s)	913
BfoI	RGCGCY	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	536
BfuI	GTATCC	2 cut(s)	676, 1000
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	5 cut(s)	81, 986, 1069, 1170, 1584
BlsI	GCNGC	5 cut(s)	82, 987, 1070, 1171, 1585
Bme1390I	CCNGG	6 cut(s)	23, 74, 125, 509, 566, 1004
Bme18I	GGWCC	3 cut(s)	127, 310, 396
BmgT120I	GGNCC	4 cut(s)	127, 310, 396, 791
BmiI	GGNNCC	5 cut(s)	129, 312, 570, 886, 1108
BmrFI	CCNGG	6 cut(s)	23, 74, 125, 509, 566, 1004
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	844, 949, 1104
BmuI	ACTGGG	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpuEI	CTTGAG	2 cut(s)	1289, 1543
BpuMI	CCSGG	2 cut(s)	125, 1004
BsaJI	CCNNGG	4 cut(s)	7, 43, 522, 564
BsaWI	WCCGGW	2 cut(s)	393, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 1514
Bse1I	ACTGG	3 cut(s)	118, 181, 1072
Bse21I	CCTNAGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	4 cut(s)	23, 74, 509, 566
BseDI	CCNNGG	4 cut(s)	7, 43, 522, 564
BseGI	GGATG	4 cut(s)	270, 725, 1144, 1567
BseLI	CCNNNNNNNGG	2 cut(s)	307, 1514
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	614, 737
BseNI	ACTGG	3 cut(s)	118, 181, 1072
BsePI	GCGCGC	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	997, 1055, 1156, 1570
BseYI	CCCAGC	4 cut(s)	54, 58, 452, 1049
Bsh1236I	CGCG	4 cut(s)	177, 256, 291, 386
BshFI	GGCC	6 cut(s)	16, 80, 521, 527, 793, 891
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	2 cut(s)	227, 831
BsiSI	CCGG	8 cut(s)	108, 125, 294, 394, 399, 794, 888, 1004
BslFI	GGGAC	2 cut(s)	169, 296
BslI	CCNNNNNNNGG	2 cut(s)	307, 1514
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	169, 296
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	6 cut(s)	16, 80, 521, 527, 793, 891
Bsp1286I	GDGCHC	4 cut(s)	156, 227, 831, 887
Bsp19I	CCATGG	2 cut(s)	7, 522
BspACI	CCGC	8 cut(s)	37, 81, 143, 175, 190, 277, 282, 289
BspANI	GGCC	6 cut(s)	16, 80, 521, 527, 793, 891
BspCNI	CTCAG	2 cut(s)	615, 738
BspFNI	CGCG	4 cut(s)	177, 256, 291, 386
BspHI	TCATGA	1 cut(s)	1392
BspLI	GGNNCC	5 cut(s)	129, 312, 570, 886, 1108
BspT107I	GGYRCC	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	118, 181, 1072
BssECI	CCNNGG	4 cut(s)	7, 43, 522, 564
BssHII	GCGCGC	1 cut(s)	254
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	2 cut(s)	7, 522
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	4 cut(s)	23, 74, 509, 566
Bst4CI	ACNGT	3 cut(s)	865, 1318, 1558
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstC8I	GCNNGC	2 cut(s)	256, 586
BstDEI	CTNAG	5 cut(s)	608, 623, 656, 746, 966
BstDSI	CCRYGG	3 cut(s)	7, 43, 522
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	270, 725, 1144, 1567
BstFNI	CGCG	4 cut(s)	177, 256, 291, 386
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	7 cut(s)	6, 50, 179, 256, 258, 293, 418
BstMAI	GTCTC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 151, 290, 1169
BstNI	CCWGG	4 cut(s)	23, 74, 509, 566
BstSCI	CCNGG	6 cut(s)	21, 72, 123, 507, 564, 1002
BstSFI	CTRYAG	1 cut(s)	913
BstUI	CGCG	4 cut(s)	177, 256, 291, 386
BstV1I	GCAGC	4 cut(s)	997, 1055, 1156, 1570
BstXI	CCANNNNNNTGG	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	623
BsuI	GTATCC	2 cut(s)	676, 1000
BsuRI	GGCC	6 cut(s)	16, 80, 521, 527, 793, 891
BtgI	CCRYGG	3 cut(s)	7, 43, 522
BtsCI	GGATG	4 cut(s)	270, 725, 1144, 1567
BtsIMutI	CAGTG	3 cut(s)	111, 1376, 1563
Cac8I	GCNNGC	2 cut(s)	256, 586
CaiI	CAGNNNCTG	2 cut(s)	1169, 1583
CciI	TCATGA	1 cut(s)	1392
CfoI	GCGC	7 cut(s)	6, 50, 179, 256, 258, 293, 418
Cfr13I	GGNCC	4 cut(s)	127, 310, 396, 791
CpoI	CGGWCCG	1 cut(s)	396
CseI	GACGC	2 cut(s)	392, 911
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	738, 1174
CspI	CGGWCCG	1 cut(s)	396
CviAII	CATG	7 cut(s)	8, 331, 523, 710, 824, 1135, 1393
CviQI	GTAC	2 cut(s)	738, 1174
DdeI	CTNAG	5 cut(s)	608, 623, 656, 746, 966
EaeI	YGGCCR	4 cut(s)	78, 519, 525, 889
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	7, 522
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	156, 887
Eco47I	GGWCC	3 cut(s)	127, 310, 396
Eco57I	CTGAAG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	574, 918
EcoRII	CCWGG	4 cut(s)	21, 72, 507, 564
EcoT14I	CCWWGG	2 cut(s)	7, 522
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	2 cut(s)	156, 887
ErhI	CCWWGG	2 cut(s)	7, 522
FaeI	CATG	7 cut(s)	11, 334, 526, 713, 827, 1138, 1396
FaqI	GGGAC	2 cut(s)	169, 296
FatI	CATG	7 cut(s)	7, 330, 522, 709, 823, 1134, 1392
FauI	CCCGC	2 cut(s)	150, 296
FblI	GTMKAC	1 cut(s)	803
Fnu4HI	GCNGC	5 cut(s)	81, 986, 1069, 1170, 1584
FokI	GGATG	4 cut(s)	257, 732, 1151, 1574
FriOI	GRGCYC	2 cut(s)	156, 887
Fsp4HI	GCNGC	5 cut(s)	81, 986, 1069, 1170, 1584
FspBI	CTAG	5 cut(s)	741, 1031, 1280, 1418, 1571
GlaI	GCGC	7 cut(s)	5, 49, 178, 255, 257, 292, 417
GluI	GCNGC	5 cut(s)	81, 986, 1069, 1170, 1584
GsaI	CCCAGC	4 cut(s)	58, 62, 456, 1053
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	6 cut(s)	16, 80, 521, 527, 793, 891
HapII	CCGG	8 cut(s)	108, 125, 294, 394, 399, 794, 888, 1004
HgaI	GACGC	2 cut(s)	392, 911
HhaI	GCGC	7 cut(s)	6, 50, 179, 256, 258, 293, 418
Hin1II	CATG	7 cut(s)	11, 334, 526, 713, 827, 1138, 1396
Hin6I	GCGC	7 cut(s)	4, 48, 177, 254, 256, 291, 416
HinP1I	GCGC	7 cut(s)	4, 48, 177, 254, 256, 291, 416
HindIII	AAGCTT	2 cut(s)	539, 653
HinfI	GANTC	7 cut(s)	297, 356, 557, 748, 770, 1550, 1574
HpaII	CCGG	8 cut(s)	108, 125, 294, 394, 399, 794, 888, 1004
HphI	GGTGA	3 cut(s)	79, 740, 859
Hpy166II	GTNNAC	3 cut(s)	340, 804, 1176
Hpy188I	TCNGA	7 cut(s)	151, 546, 619, 747, 758, 1095, 1579
Hpy188III	TCNNGA	2 cut(s)	1150, 1393
Hpy8I	GTNNAC	3 cut(s)	340, 804, 1176
Hpy99I	CGWCG	2 cut(s)	386, 791
HpyCH4III	ACNGT	3 cut(s)	865, 1318, 1558
HpyCH4IV	ACGT	2 cut(s)	786, 1121
HpyCH4V	TGCA	7 cut(s)	588, 705, 713, 857, 985, 1117, 1246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 151, 290, 1169
HpyF3I	CTNAG	5 cut(s)	608, 623, 656, 746, 966
HpySE526I	ACGT	2 cut(s)	786, 1121
Hsp92II	CATG	7 cut(s)	11, 334, 526, 713, 827, 1138, 1396
HspAI	GCGC	7 cut(s)	4, 48, 177, 254, 256, 291, 416
LmnI	GCTCC	2 cut(s)	890, 1106
Lsp1109I	GCAGC	4 cut(s)	997, 1055, 1156, 1570
LweI	GCATC	3 cut(s)	844, 949, 1104
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	5 cut(s)	741, 1031, 1280, 1418, 1571
MaeII	ACGT	2 cut(s)	786, 1121
MaeIII	GTNAC	4 cut(s)	1187, 1222, 1327, 1338
MbiI	CCGCTC	1 cut(s)	145
MboII	GAAGA	6 cut(s)	154, 205, 452, 1210, 1304, 1408
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	4 cut(s)	156, 227, 831, 887
MlsI	TGGCCA	2 cut(s)	521, 527
MluCI	AATT	7 cut(s)	317, 423, 574, 875, 906, 918, 1283
MluI	ACGCGT	1 cut(s)	384
MluNI	TGGCCA	2 cut(s)	521, 527
MlyI	GAGTC	2 cut(s)	757, 764
Mox20I	TGGCCA	2 cut(s)	521, 527
Mph1103I	ATGCAT	1 cut(s)	715
MscI	TGGCCA	2 cut(s)	521, 527
MseI	TTAA	4 cut(s)	537, 1059, 1193, 1434
MslI	CAYNNNNRTG	4 cut(s)	335, 467, 718, 824
Msp20I	TGGCCA	2 cut(s)	521, 527
MspA1I	CMGCKG	1 cut(s)	58
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	8 cut(s)	108, 125, 294, 394, 399, 794, 888, 1004
MspR9I	CCNGG	6 cut(s)	23, 74, 125, 509, 566, 1004
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	4 cut(s)	23, 74, 509, 566
MvnI	CGCG	4 cut(s)	177, 256, 291, 386
MwoI	GCNNNNNNNGC	4 cut(s)	45, 151, 290, 1169
NciI	CCSGG	2 cut(s)	125, 1004
NcoI	CCATGG	2 cut(s)	7, 522
NlaIII	CATG	7 cut(s)	11, 334, 526, 713, 827, 1138, 1396
NlaIV	GGNNCC	5 cut(s)	129, 312, 570, 886, 1108
NmeAIII	GCCGAG	1 cut(s)	1449
NmuCI	GTSAC	2 cut(s)	1187, 1338
NsiI	ATGCAT	1 cut(s)	715
PagI	TCATGA	1 cut(s)	1392
PauI	GCGCGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PctI	GAATGC	1 cut(s)	705
PfeI	GAWTC	5 cut(s)	297, 356, 557, 1550, 1574
PfoI	TCCNGGA	2 cut(s)	123, 1002
PkrI	GCNGC	5 cut(s)	82, 987, 1070, 1171, 1585
PleI	GAGTC	2 cut(s)	756, 764
PpsI	GAGTC	2 cut(s)	756, 764
PpuMI	RGGWCCY	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	1020
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	4 cut(s)	21, 72, 507, 564
PspFI	CCCAGC	4 cut(s)	54, 58, 452, 1049
PspGI	CCWGG	4 cut(s)	21, 72, 507, 564
PspN4I	GGNNCC	5 cut(s)	129, 312, 570, 886, 1108
PspPI	GGNCC	4 cut(s)	127, 310, 396, 791
PspPPI	RGGWCCY	1 cut(s)	310
PstNI	CAGNNNCTG	2 cut(s)	1169, 1583
PteI	GCGCGC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	739, 1175
RsaNI	GTAC	2 cut(s)	738, 1174
RseI	CAYNNNNRTG	4 cut(s)	335, 467, 718, 824
Rsr2I	CGGWCCG	1 cut(s)	396
RsrII	CGGWCCG	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	537, 1059, 1193, 1434
SatI	GCNGC	5 cut(s)	81, 986, 1069, 1170, 1584
Sau96I	GGNCC	4 cut(s)	127, 310, 396, 791
SchI	GAGTC	2 cut(s)	757, 764
ScrFI	CCNGG	6 cut(s)	23, 74, 125, 509, 566, 1004
SduI	GDGCHC	4 cut(s)	156, 227, 831, 887
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	844, 949, 1104
SfcI	CTRYAG	1 cut(s)	913
SinI	GGWCC	3 cut(s)	127, 310, 396
SmiMI	CAYNNNNRTG	4 cut(s)	335, 467, 718, 824
SmlI	CTYRAG	3 cut(s)	536, 1268, 1522
SmoI	CTYRAG	3 cut(s)	536, 1268, 1522
SpeI	ACTAGT	1 cut(s)	740
Sse9I	AATT	7 cut(s)	317, 423, 574, 875, 906, 918, 1283
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	8 cut(s)	37, 81, 143, 175, 190, 277, 282, 289
SspI	AATATT	2 cut(s)	700, 1129
SspMI	CTAG	5 cut(s)	741, 1031, 1280, 1418, 1571
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	6 cut(s)	21, 72, 123, 507, 564, 1002
StyI	CCWWGG	2 cut(s)	7, 522
TaaI	ACNGT	3 cut(s)	865, 1318, 1558
TaiI	ACGT	2 cut(s)	789, 1124
TaqI	TCGA	9 cut(s)	207, 354, 381, 408, 560, 578, 949, 1112, 1215
TasI	AATT	7 cut(s)	317, 423, 574, 875, 906, 918, 1283
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	5 cut(s)	297, 356, 557, 1550, 1574
Tru1I	TTAA	4 cut(s)	537, 1059, 1193, 1434
Tru9I	TTAA	4 cut(s)	537, 1059, 1193, 1434
TscAI	CASTG	3 cut(s)	118, 1376, 1563
TseFI	GTSAC	2 cut(s)	1187, 1338
TseI	GCWGC	4 cut(s)	985, 1068, 1169, 1583
Tsp45I	GTSAC	2 cut(s)	1187, 1338
TspDTI	ATGAA	5 cut(s)	347, 698, 779, 812, 1409
TspGWI	ACGGA	1 cut(s)	1397
TspRI	CASTG	3 cut(s)	118, 1376, 1563
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	127, 310, 396
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	3 cut(s)	423, 574, 918
XmiI	GTMKAC	1 cut(s)	803
XspI	CTAG	5 cut(s)	741, 1031, 1280, 1418, 1571
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.