Rroxscaffold_4G00294690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003384
Physical Location & Seq
Reverse (-)
14697247 .. 14700699
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294690.1

Sequence Viewer

Length: 2709 bp
ATGTTCGGCTCCGCCGGGAGCGGGATGACCTCAATGGAGAGGTATAATATATGTAGAGACGAGTGGGTGGCCATGGAAGGGCTGAGCGAGCTTTCGGGCGGGTGTGTGGGGTTCTTTGTTGGAGATGTGGAGGAGAGGGAGTTTTGGGTGATGGGCGGTGGAATAGTGATGGCGGGCGGAGGGAGACAAGTTGATAATGAGGTTGATCTTGCACAACCTGGTGTGTTCATGCTTGATGGGAATGATATATTCAGGGTTGAAGCTCGAGTCTTTGCCACCCTTGAAGTGAGAAAGATCAAATCTTTATATGTTCTTGGAAACGCAATGCGCCATGGAAGGCCTCTATTCCAACCCAAACCCCACATCGGCGCTGCCGCTGCTGCTTCTGAACTGGGAGACATACTCCTGGTGGCCTCCATCACCAAGACCCTCTCCCAGTCCGGCACCCGCAACCTCCCCCACCCTCCTCCTCCTCCTCTCTCCGACCCTCTCCTCCTCCAAATCCTCCGCACCCAATCCCTCCACCCCTCCAAGAAACTCGACTTCTTCAAATGGTCCTCTCTCACCCATTCCAGCAGACACTCCCCCGCCACTTTCTCCCACATCCTCCGCACCGCCTGCCGCGCCGGGTTCCTCTCCGAAATCCCGGGATTGCTTAACATCATGAAACAGCATGCTGTAATAGTCGATTCCGGAACCTTCAAGTCTTTGCTGGATGCCTCCATCAGGGCAGGTAAGTTTGACATGGCAATCGAAATTTTAGACATTATGCAAGAACTGGGTGCTGAGCTGAGTACGGATATGTACAACTCGGTGTTGGTTGCTTTAGTTAGGAAGGGTCAGTTGGGTTTGGCGATGTCTATTTTGGTTAAGCTTCTAGAAGGTGGGTCTTCTCAAGTACCCAATTGCATTGCGTGTAATGAGTTGCTTGTGGGTCTTAGGAAAGGTGACATGAGGGTAGAGTTTAAGCAGGTGTTTGATAAGCTTAGGGGGAATGAGTGGTATGAGATGGATACTTGGGGTTATAATATTTGTATTCATGCGTTTGGGTGTTGGGGTGATCTGGGTACTAGTTTGAGTCTCTTTAAGGAGATGAAAGACTTGAACTCGGACTCGGTTTTTCCTGATTTGTCTACTTATAATAGCCTCATTCATGTGCTGTGTTTGGTTGGGAAGGTGGATGATGCAGTTACTGTGTGGGAGGAGTTGAAGTGTTCTGGTCATGAGCCGGATGCCATTACCTACCGGATTCTTATTCAGGGCTGTTGTAAGTGTTATCGAATAGAGGAAGCTACTAAGATTTTTAGTGAAATGCAGAACAATGGGTACAATCCGGATACGGTTGTTTATAATTCGTTGATGGATGGGTTGTTCAAGGCGAGGAAAGTTAATGAAGGGTGTCAGATGTTTGAGAGGATGGTTCAGTATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTGATTGATGGGTTGTTTAGGAATGCAAGGGCCGAGGCTGCTTATACTCTATTTTGTGACTTGAAGAAGAAGGGTCAGTTTGTGGATGGTGTTACGTATAGCATTGTTGTTCTGCAACTTTGTAGGGAGGGTCTGCTCGAGGAGGCGCTAGAATTGGTGGAAGAAATGGAAATGCGAGGCTTTACTGTTGATTTGGTTACTATATCAACACTCATGATTGGGCTGTATAAGCATAGTCGATGGGATTGGACAGACAAGCTCATGAAGCGTATTAGGGATGGTAATCTGCTGCCTAGTGTTCTTAGATGGAAAGTCGATATGGAAGCTACAATGAAAGCTCCACAGAGCAAGAAAAAGGACCTCACACCACTGTTCCCAAGTAAAGGTGATTTCAGCGACGTTTTGAGTCTAATAAGTTCTGCTGCTTCGAAAATGGATGGAGACATTGAATCAGATGATGCTGGGGTTAAAGATGATAATAATTCGTCTACAGATATTGATCAGTGGTCATCATCTCCACATATGGATCACTTGGCTAATCAATTGAAGTCCACTGACCACGCCTCTCAGCTGTTTTCGCTATCTAGAGGGCAACGAGTTCAAGCCGAGGGAGAAAGCACTTTTGATATTGATATGGTAAATACTTTCTTATCCCTATTTTTGGCCAAGGGGAAGCTGAGCATAGCTTGCAAATTGTTTGAGATTTTCAGTGATGCGGGTGCAAACCCTTTGAGTTACACTTACAATTCCATCTTGAGTTCGTTTGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTGCTCAGTGAAATGGGAGAAAAAGTTTGCCCCACAGATATAGCAACATACAATATGATAATTCAAGGCTTGGGGAAGATGGGAAGGGCCGATCTAGCCAGTAGTGTTCTGGATAAGCTAATGAAGCAGGGTGGTTATCTTGATGTTGTCATGTACAACACCTTGATTAATGCGCTGGGGAAGGCTAACCGGATTGACGAAGTAAACAAGCTATTTAAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTCAATACGCTTATTGAAGTTCATAGTAAAGCGGGTCGACTGAAAGATGCGTATAAATTTCTGAAAATGATGCTGGATTCAGGCTGCACACCAAACCATGTCACTGACACCACTTTGGATTTTCTGGGGAAGGAGATTGAGAAATCGAGGTACCAAAAGGCATCATTTGTACGAAATAAGGATGACTCCTGA

Protein Analysis

902

Amino Acids

100.25

Weight (kDa)

5.82

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 232 - 365 3.2e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 366 - 422 5.8e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 373 - 403 7e-09 PPR repeat
PPR_2 PF13041 375 - 424 4.8e-16 PPR repeat family
PPR_1 PF12854 407 - 439 8.3e-10 PPR repeat
PPR PF01535 413 - 442 1.9e-06 PPR repeat
PPR_3 PF13812 433 - 490 1.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 441 - 474 1.5e-07 PPR repeat
PPR_2 PF13041 445 - 493 3.2e-14 PPR repeat family
PPR_2 PF13041 482 - 529 8.5e-11 PPR repeat family
PPR_1 PF12854 512 - 544 3.5e-07 PPR repeat
PPR PF01535 518 - 548 9.4e-06 PPR repeat
PPR_2 PF13041 527 - 564 3.7e-06 PPR repeat family
PPR_2 PF13041 732 - 779 1.7e-11 PPR repeat family
PPR_3 PF13812 788 - 847 1.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 800 - 829 5.9e-07 PPR repeat
PPR_2 PF13041 801 - 844 1.8e-15 PPR repeat family
PPR PF01535 803 - 833 3.5e-08 PPR repeat
PPR_3 PF13812 823 - 874 2.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 832 - 863 5.9e-10 PPR repeat
PPR_2 PF13041 835 - 878 3.9e-12 PPR repeat family
PPR PF01535 838 - 868 3.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1026, 1140, 1350
AarI CACCTGC 1 cut(s) 961
Acc36I ACCTGC 2 cut(s) 722, 961
Acc65I GGTACC 1 cut(s) 2667
AccB1I GGYRCC 2 cut(s) 443, 2667
AccBSI CCGCTC 1 cut(s) 21
AccI GTMKAC 3 cut(s) 1133, 1949, 2554
AccII CGCG 1 cut(s) 624
AccIII TCCGGA 2 cut(s) 692, 1333
AclWI GGATC 1 cut(s) 1995
AcoI YGGCCR 2 cut(s) 69, 2124
AcsI RAATTY 2 cut(s) 756, 2573
AfaI GTAC 8 cut(s) 796, 806, 900, 1069, 1328, 2414, 2669, 2688
AfiI CCNNNNNNNGG 7 cut(s) 21, 78, 365, 726, 1446, 1844, 2122
AhlI ACTAGT 1 cut(s) 1070
AjiI CACGTC 1 cut(s) 1446
AjnI CCWGG 2 cut(s) 217, 405
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AloI GAACNNNNNNTCC 2 cut(s) 1355, 1387
Alw21I GWGCWC 1 cut(s) 2265
Alw26I GTCTC 5 cut(s) 51, 178, 390, 1085, 1896
AlwI GGATC 1 cut(s) 1995
AlwNI CAGNNNCTG 1 cut(s) 1193
Ama87I CYCGRG 3 cut(s) 264, 646, 1598
Aor13HI TCCGGA 2 cut(s) 692, 1333
AoxI GGCC 6 cut(s) 69, 338, 411, 1491, 2124, 2346
ApeKI GCWGC 7 cut(s) 371, 377, 380, 1499, 1750, 1883, 2601
ApoI RAATTY 2 cut(s) 756, 2573
AseI ATTAAT 1 cut(s) 2427
Asp718I GGTACC 1 cut(s) 2667
AspLEI GCGC 5 cut(s) 330, 371, 626, 1609, 2434
AspS9I GGNCC 4 cut(s) 555, 1491, 1819, 2346
AsuC2I CCSGG 4 cut(s) 16, 628, 647, 648
AsuHPI GGTGA 7 cut(s) 160, 412, 556, 959, 1070, 1444, 1859
AsuII TTCGAA 1 cut(s) 1889
AvaI CYCGRG 3 cut(s) 264, 646, 1598
AvaII GGWCC 2 cut(s) 555, 1819
BaeI ACNNNNGTAYC 2 cut(s) 1329, 1362
BalI TGGCCA 2 cut(s) 71, 2126
BanI GGYRCC 2 cut(s) 443, 2667
BbsI GAAGAC 1 cut(s) 882
Bbv12I GWGCWC 1 cut(s) 2265
BbvI GCAGC 7 cut(s) 358, 364, 367, 1486, 1737, 1870, 2588
BciT130I CCWGG 2 cut(s) 219, 407
BciVI GTATCC 2 cut(s) 1006, 1330
BclI TGATCA 1 cut(s) 1960
BcnI CCSGG 4 cut(s) 16, 628, 647, 648
BcoDI GTCTC 5 cut(s) 51, 178, 390, 1085, 1896
BcuI ACTAGT 1 cut(s) 1070
BfaI CTAG 6 cut(s) 878, 1071, 1610, 1755, 2046, 2354
BfmI CTRYAG 1 cut(s) 1950
BfoI RGCGCY 2 cut(s) 372, 1610
BfuAI ACCTGC 2 cut(s) 722, 961
BfuI GTATCC 2 cut(s) 1006, 1330
BisI GCNGC 9 cut(s) 372, 375, 378, 381, 622, 1500, 1751, 1884, 2602
BlpI GCTNAGC 3 cut(s) 83, 786, 2138
BlsI GCNGC 9 cut(s) 373, 376, 379, 382, 623, 1501, 1752, 1885, 2603
Bme1390I CCNGG 6 cut(s) 16, 219, 407, 628, 647, 648
Bme18I GGWCC 2 cut(s) 555, 1819
BmeT110I CYCGRG 3 cut(s) 264, 646, 1598
BmgBI CACGTC 1 cut(s) 1446
BmgT120I GGNCC 4 cut(s) 555, 1491, 1819, 2346
BmiI GGNNCC 5 cut(s) 10, 445, 632, 697, 2669
BmrFI CCNGG 6 cut(s) 16, 219, 407, 628, 647, 648
BmrI ACTGGG 3 cut(s) 401, 430, 788
BmsI GCATC 8 cut(s) 706, 1174, 1222, 1909, 2164, 2554, 2577, 2687
BmuI ACTGGG 3 cut(s) 401, 430, 788
BpiI GAAGAC 1 cut(s) 882
BplI GAGNNNNNCTC 2 cut(s) 387, 419
Bpu10I CCTNAGC 1 cut(s) 986
Bpu1102I GCTNAGC 3 cut(s) 83, 786, 2138
Bpu14I TTCGAA 1 cut(s) 1889
BpuEI CTTGAG 2 cut(s) 879, 2236
BpuMI CCSGG 4 cut(s) 16, 628, 647, 648
BsaAI YACGTR 1 cut(s) 1557
BsaBI GATNNNNATC 2 cut(s) 1743, 1959
BsaJI CCNNGG 6 cut(s) 72, 331, 646, 1494, 2067, 2127
BsaWI WCCGGW 4 cut(s) 692, 1245, 1333, 2448
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 1196, 1226, 2268, 2298
Bsc4I CCNNNNNNNGG 7 cut(s) 21, 78, 365, 726, 1446, 1844, 2122
Bse1I ACTGG 4 cut(s) 396, 436, 783, 2358
Bse3DI GCAATG 2 cut(s) 330, 909
Bse8I GATNNNNATC 2 cut(s) 1743, 1959
BseAI TCCGGA 2 cut(s) 692, 1333
BseBI CCWGG 2 cut(s) 219, 407
BseDI CCNNGG 6 cut(s) 72, 331, 646, 1494, 2067, 2127
BseJI GATNNNNATC 2 cut(s) 1743, 1959
BseLI CCNNNNNNNGG 7 cut(s) 21, 78, 365, 726, 1446, 1844, 2122
BseMI GCAATG 2 cut(s) 330, 909
BseMII CTCAG 6 cut(s) 74, 777, 782, 2042, 2129, 2278
BseNI ACTGG 4 cut(s) 396, 436, 783, 2358
BseRI GAGGAG 9 cut(s) 146, 456, 459, 462, 465, 482, 485, 1217, 1616
BseXI GCAGC 7 cut(s) 358, 364, 367, 1486, 1737, 1870, 2588
BseYI CCCAGC 2 cut(s) 1922, 2434
BsgI GTGCAG 1 cut(s) 2587
Bsh1236I CGCG 1 cut(s) 624
BshFI GGCC 6 cut(s) 71, 340, 413, 1493, 2126, 2348
BshNI GGYRCC 2 cut(s) 443, 2667
BsiHKAI GWGCWC 1 cut(s) 2265
BsiHKCI CYCGRG 3 cut(s) 264, 646, 1598
BsiSI CCGG 9 cut(s) 15, 441, 627, 647, 693, 1229, 1246, 1334, 2449
BslI CCNNNNNNNGG 7 cut(s) 21, 78, 365, 726, 1446, 1844, 2122
BsmAI GTCTC 5 cut(s) 51, 178, 390, 1085, 1896
BsmBI CGTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 1489
BsnI GGCC 6 cut(s) 71, 340, 413, 1493, 2126, 2348
BsoBI CYCGRG 3 cut(s) 264, 646, 1598
Bsp119I TTCGAA 1 cut(s) 1889
Bsp1286I GDGCHC 1 cut(s) 2265
Bsp13I TCCGGA 2 cut(s) 692, 1333
Bsp1407I TGTACA 2 cut(s) 804, 2412
Bsp143I GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
Bsp1720I GCTNAGC 3 cut(s) 83, 786, 2138
Bsp19I CCATGG 2 cut(s) 72, 331
BspANI GGCC 6 cut(s) 71, 340, 413, 1493, 2126, 2348
BspCNI CTCAG 6 cut(s) 75, 778, 783, 2041, 2130, 2277
BspEI TCCGGA 2 cut(s) 692, 1333
BspFNI CGCG 1 cut(s) 624
BspHI TCATGA 4 cut(s) 663, 1222, 1674, 1722
BspLI GGNNCC 5 cut(s) 10, 445, 632, 697, 2669
BspMI ACCTGC 2 cut(s) 722, 961
BspPI GGATC 1 cut(s) 1995
BspT104I TTCGAA 1 cut(s) 1889
BspT107I GGYRCC 2 cut(s) 443, 2667
BsrBI CCGCTC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 330, 909
BsrGI TGTACA 2 cut(s) 804, 2412
BsrI ACTGG 4 cut(s) 396, 436, 783, 2358
BssECI CCNNGG 6 cut(s) 72, 331, 646, 1494, 2067, 2127
BssMI GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
BssT1I CCWWGG 3 cut(s) 72, 331, 2127
Bst2UI CCWGG 2 cut(s) 219, 407
Bst4CI ACNGT 4 cut(s) 1195, 1342, 1648, 1833
Bst6I CTCTTC 1 cut(s) 2480
BstAPI GCANNNNNTGC 2 cut(s) 618, 2148
BstAUI TGTACA 2 cut(s) 804, 2412
BstBAI YACGTR 1 cut(s) 1557
BstBI TTCGAA 1 cut(s) 1889
BstC8I GCNNGC 5 cut(s) 89, 175, 619, 675, 2149
BstDSI CCRYGG 2 cut(s) 72, 331
BstENI CCTNNNNNAGG 1 cut(s) 724
BstFNI CGCG 1 cut(s) 624
BstH2I RGCGCY 2 cut(s) 372, 1610
BstHHI GCGC 5 cut(s) 330, 371, 626, 1609, 2434
BstKTI GATC 6 cut(s) 208, 297, 1063, 1963, 1990, 2353
BstMAI GTCTC 5 cut(s) 51, 178, 390, 1085, 1896
BstMBI GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
BstNI CCWGG 2 cut(s) 219, 407
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 6 cut(s) 14, 217, 405, 626, 645, 646
BstSFI CTRYAG 1 cut(s) 1950
BstSNI TACGTA 1 cut(s) 1557
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 7 cut(s) 358, 364, 367, 1486, 1737, 1870, 2588
BstV2I GAAGAC 1 cut(s) 882
BsuI GTATCC 2 cut(s) 1006, 1330
BsuRI GGCC 6 cut(s) 71, 340, 413, 1493, 2126, 2348
BtgI CCRYGG 2 cut(s) 72, 331
BtgZI GCGATG 1 cut(s) 869
BtrI CACGTC 1 cut(s) 1446
BtsIMutI CAGTG 6 cut(s) 1829, 1970, 2013, 2176, 2272, 2619
BveI ACCTGC 2 cut(s) 722, 961
Cac8I GCNNGC 5 cut(s) 89, 175, 619, 675, 2149
CaiI CAGNNNCTG 1 cut(s) 1193
CciI TCATGA 4 cut(s) 663, 1222, 1674, 1722
CfoI GCGC 5 cut(s) 330, 371, 626, 1609, 2434
Cfr13I GGNCC 4 cut(s) 555, 1491, 1819, 2346
Cfr9I CCCGGG 1 cut(s) 646
CsiI ACCWGGT 1 cut(s) 217
Csp6I GTAC 8 cut(s) 795, 805, 899, 1068, 1327, 2413, 2668, 2687
CviQI GTAC 8 cut(s) 795, 805, 899, 1068, 1327, 2413, 2668, 2687
DpnI GATC 6 cut(s) 207, 296, 1062, 1962, 1989, 2352
DpnII GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
EaeI YGGCCR 2 cut(s) 69, 2124
Eam1104I CTCTTC 1 cut(s) 2480
EarI CTCTTC 1 cut(s) 2480
EciI GGCGGA 1 cut(s) 192
Eco105I TACGTA 1 cut(s) 1557
Eco130I CCWWGG 3 cut(s) 72, 331, 2127
Eco147I AGGCCT 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 555, 1819
Eco88I CYCGRG 3 cut(s) 264, 646, 1598
EcoNI CCTNNNNNAGG 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 1819
EcoRII CCWGG 2 cut(s) 217, 405
EcoT14I CCWWGG 3 cut(s) 72, 331, 2127
ErhI CCWWGG 3 cut(s) 72, 331, 2127
Esp3I CGTCTC 1 cut(s) 51
FalI AAGNNNNNCTT 2 cut(s) 2225, 2257
FauI CCCGC 7 cut(s) 14, 92, 166, 455, 595, 2170, 2542
FauNDI CATATG 1 cut(s) 1983
FbaI TGATCA 1 cut(s) 1960
FblI GTMKAC 3 cut(s) 1133, 1949, 2554
Fnu4HI GCNGC 9 cut(s) 372, 375, 378, 381, 622, 1500, 1751, 1884, 2602
Fsp4HI GCNGC 9 cut(s) 372, 375, 378, 381, 622, 1500, 1751, 1884, 2602
FspBI CTAG 6 cut(s) 878, 1071, 1610, 1755, 2046, 2354
GlaI GCGC 5 cut(s) 329, 370, 625, 1608, 2433
GluI GCNGC 9 cut(s) 372, 375, 378, 381, 622, 1500, 1751, 1884, 2602
GsaI CCCAGC 2 cut(s) 1926, 2438
HaeII RGCGCY 2 cut(s) 372, 1610
HaeIII GGCC 6 cut(s) 71, 340, 413, 1493, 2126, 2348
HapII CCGG 9 cut(s) 15, 441, 627, 647, 693, 1229, 1246, 1334, 2449
HhaI GCGC 5 cut(s) 330, 371, 626, 1609, 2434
Hin6I GCGC 5 cut(s) 328, 369, 624, 1607, 2432
HinP1I GCGC 5 cut(s) 328, 369, 624, 1607, 2432
HincII GTYRAC 1 cut(s) 2555
HindII GTYRAC 1 cut(s) 2555
HindIII AAGCTT 2 cut(s) 872, 983
HinfI GANTC 9 cut(s) 267, 689, 1078, 1112, 1249, 1867, 1910, 2594, 2702
HpaII CCGG 9 cut(s) 15, 441, 627, 647, 693, 1229, 1246, 1334, 2449
HphI GGTGA 7 cut(s) 160, 412, 556, 959, 1070, 1444, 1859
Hpy166II GTNNAC 6 cut(s) 1134, 1449, 1950, 2013, 2464, 2555
Hpy188I TCNGA 8 cut(s) 388, 484, 640, 1111, 1404, 1464, 1915, 2580
Hpy8I GTNNAC 6 cut(s) 1134, 1449, 1950, 2013, 2464, 2555
Hpy99I CGWCG 2 cut(s) 1447, 1862
HpyCH4III ACNGT 4 cut(s) 1195, 1342, 1648, 1833
HpyCH4IV ACGT 4 cut(s) 1445, 1451, 1556, 1860
HpySE526I ACGT 4 cut(s) 1445, 1451, 1556, 1860
HspAI GCGC 5 cut(s) 328, 369, 624, 1607, 2432
Kpn2I TCCGGA 2 cut(s) 692, 1333
KpnI GGTACC 1 cut(s) 2671
Ksp22I TGATCA 1 cut(s) 1960
Kzo9I GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
LmnI GCTCC 3 cut(s) 14, 18, 1804
Lsp1109I GCAGC 7 cut(s) 358, 364, 367, 1486, 1737, 1870, 2588
LweI GCATC 8 cut(s) 706, 1174, 1222, 1909, 2164, 2554, 2577, 2687
MabI ACCWGGT 1 cut(s) 217
MaeI CTAG 6 cut(s) 878, 1071, 1610, 1755, 2046, 2354
MaeII ACGT 4 cut(s) 1445, 1451, 1556, 1860
MaeIII GTNAC 8 cut(s) 947, 1189, 1517, 1552, 1657, 2195, 2512, 2617
MalI GATC 6 cut(s) 207, 296, 1062, 1962, 1989, 2352
MbiI CCGCTC 1 cut(s) 21
MboI GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
MboII GAAGA 7 cut(s) 538, 882, 1537, 1540, 1634, 2347, 2497
MfeI CAATTG 2 cut(s) 904, 2003
MhlI GDGCHC 1 cut(s) 2265
MlsI TGGCCA 2 cut(s) 71, 2126
MluNI TGGCCA 2 cut(s) 71, 2126
MlyI GAGTC 5 cut(s) 276, 1087, 1106, 1876, 2696
MmeI TCCRAC 3 cut(s) 100, 373, 507
Mox20I TGGCCA 2 cut(s) 71, 2126
MroI TCCGGA 2 cut(s) 692, 1333
MscI TGGCCA 2 cut(s) 71, 2126
MseI TTAA 8 cut(s) 657, 870, 966, 1086, 1389, 1929, 2427, 2475
MslI CAYNNNNRTG 1 cut(s) 1154
Msp20I TGGCCA 2 cut(s) 71, 2126
MspA1I CMGCKG 2 cut(s) 377, 2032
MspI CCGG 9 cut(s) 15, 441, 627, 647, 693, 1229, 1246, 1334, 2449
MspR9I CCNGG 6 cut(s) 16, 219, 407, 628, 647, 648
MunI CAATTG 2 cut(s) 904, 2003
Mva1269I GAATGC 1 cut(s) 1489
MvaI CCWGG 2 cut(s) 219, 407
MvnI CGCG 1 cut(s) 624
NciI CCSGG 4 cut(s) 16, 628, 647, 648
NcoI CCATGG 2 cut(s) 72, 331
NdeI CATATG 1 cut(s) 1983
NdeII GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
NlaIV GGNNCC 5 cut(s) 10, 445, 632, 697, 2669
NmeAIII GCCGAG 2 cut(s) 1519, 2092
NmuCI GTSAC 4 cut(s) 947, 1517, 2512, 2617
NspI RCATGY 1 cut(s) 677
NspV TTCGAA 1 cut(s) 1889
PaeI GCATGC 1 cut(s) 677
PaeR7I CTCGAG 2 cut(s) 264, 1598
PagI TCATGA 4 cut(s) 663, 1222, 1674, 1722
PaqCI CACCTGC 1 cut(s) 961
PceI AGGCCT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 1448
PctI GAATGC 1 cut(s) 1489
PfeI GAWTC 4 cut(s) 689, 1249, 1910, 2594
PkrI GCNGC 9 cut(s) 373, 376, 379, 382, 623, 1501, 1752, 1885, 2603
PleI GAGTC 5 cut(s) 275, 1086, 1106, 1875, 2696
PpsI GAGTC 5 cut(s) 275, 1086, 1106, 1875, 2696
Ppu21I YACGTR 1 cut(s) 1557
PpuMI RGGWCCY 1 cut(s) 1819
PshBI ATTAAT 1 cut(s) 2427
PsiI TTATAA 3 cut(s) 1026, 1140, 1350
Psp5II RGGWCCY 1 cut(s) 1819
Psp6I CCWGG 2 cut(s) 217, 405
PspFI CCCAGC 2 cut(s) 1922, 2434
PspGI CCWGG 2 cut(s) 217, 405
PspN4I GGNNCC 5 cut(s) 10, 445, 632, 697, 2669
PspPI GGNCC 4 cut(s) 555, 1491, 1819, 2346
PspPPI RGGWCCY 1 cut(s) 1819
PspXI VCTCGAGB 2 cut(s) 264, 1598
PsrI GAACNNNNNNTAC 2 cut(s) 1310, 1342
PstNI CAGNNNCTG 1 cut(s) 1193
PvuII CAGCTG 1 cut(s) 2032
RsaI GTAC 8 cut(s) 796, 806, 900, 1069, 1328, 2414, 2669, 2688
RsaNI GTAC 8 cut(s) 795, 805, 899, 1068, 1327, 2413, 2668, 2687
RseI CAYNNNNRTG 1 cut(s) 1154
SalI GTCGAC 1 cut(s) 2553
SaqAI TTAA 8 cut(s) 657, 870, 966, 1086, 1389, 1929, 2427, 2475
SatI GCNGC 9 cut(s) 372, 375, 378, 381, 622, 1500, 1751, 1884, 2602
Sau3AI GATC 6 cut(s) 205, 294, 1060, 1960, 1987, 2350
Sau96I GGNCC 4 cut(s) 555, 1491, 1819, 2346
SchI GAGTC 5 cut(s) 276, 1087, 1106, 1876, 2696
ScrFI CCNGG 6 cut(s) 16, 219, 407, 628, 647, 648
SduI GDGCHC 1 cut(s) 2265
SexAI ACCWGGT 1 cut(s) 217
SfaNI GCATC 8 cut(s) 706, 1174, 1222, 1909, 2164, 2554, 2577, 2687
SfcI CTRYAG 1 cut(s) 1950
Sfr274I CTCGAG 2 cut(s) 264, 1598
SfuI TTCGAA 1 cut(s) 1889
SinI GGWCC 2 cut(s) 555, 1819
SlaI CTCGAG 2 cut(s) 264, 1598
SmaI CCCGGG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 1154
SmlI CTYRAG 4 cut(s) 264, 894, 1598, 2215
SmoI CTYRAG 4 cut(s) 264, 894, 1598, 2215
SnaBI TACGTA 1 cut(s) 1557
SpeI ACTAGT 1 cut(s) 1070
SphI GCATGC 1 cut(s) 677
SseBI AGGCCT 1 cut(s) 340
SspI AATATT 2 cut(s) 1030, 1459
SspMI CTAG 6 cut(s) 878, 1071, 1610, 1755, 2046, 2354
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 6 cut(s) 14, 217, 405, 626, 645, 646
StyI CCWWGG 3 cut(s) 72, 331, 2127
TaaI ACNGT 4 cut(s) 1195, 1342, 1648, 1833
TaiI ACGT 4 cut(s) 1448, 1454, 1559, 1863
TatI WGTACW 2 cut(s) 804, 2412
TauI GCSGC 2 cut(s) 377, 624
TfiI GAWTC 4 cut(s) 689, 1249, 1910, 2594
Tru1I TTAA 8 cut(s) 657, 870, 966, 1086, 1389, 1929, 2427, 2475
Tru9I TTAA 8 cut(s) 657, 870, 966, 1086, 1389, 1929, 2427, 2475
TscAI CASTG 6 cut(s) 1836, 1970, 2020, 2176, 2272, 2626
TseFI GTSAC 4 cut(s) 947, 1517, 2512, 2617
TseI GCWGC 7 cut(s) 371, 377, 380, 1499, 1750, 1883, 2601
Tsp45I GTSAC 4 cut(s) 947, 1517, 2512, 2617
TspGWI ACGGA 1 cut(s) 812
TspMI CCCGGG 1 cut(s) 646
TspRI CASTG 6 cut(s) 1836, 1970, 2020, 2176, 2272, 2626
VpaK11BI GGWCC 2 cut(s) 555, 1819
VspI ATTAAT 1 cut(s) 2427
XagI CCTNNNNNAGG 1 cut(s) 724
XapI RAATTY 2 cut(s) 756, 2573
XbaI TCTAGA 2 cut(s) 877, 2045
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 2365
XhoI CTCGAG 2 cut(s) 264, 1598
XmaI CCCGGG 1 cut(s) 646
XmiI GTMKAC 3 cut(s) 1133, 1949, 2554
XspI CTAG 6 cut(s) 878, 1071, 1610, 1755, 2046, 2354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.