Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

13021470 .. 13022096

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTGTGAAGCCCAACGGTCACACGTGCTCCATGTCACCTATTGTGTTTGTCCACGTGTTAGGCTTGAAAATTCCTCACACATGAGAGGCGTGTTGAGAATGAATCTCACATTGATGGTAGGAGGAGGGACCTTTGGTTTTATAATGGGACCTCAACTTTCTTCAACTAATGATAAACACACACCATTTTTAGCCTCTGACATGCTAATATTTTATTATGTTTATTATTTTTGTTTCTACATAATTGTGATAACTCGAGGTTTGGGGCAGATGGGAAGAGCTGATTTAACGAGTTCTATCCCGGGAAAGTTAATGAAGCAGGGTGGTCTCTACATGGTTATGTACAACACCTTGATTAATGCGCTAGGGAACGTTTGCCGGATTGACGAAGTAAACAAGCTCTTTGAGCAGATGAAGAGTGGTTTATCAACTTTGGCCAGCACCACATTAAACCTCTTTAATCCCACATTGGTCTACTCGATGAAGTTCCTCCAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.72

Weight (kDa)

9.18

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	474
AclI	AACGTT	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	70
AcvI	CACGTG	2 cut(s)	25, 56
AfaI	GTAC	1 cut(s)	344
AflIII	ACRYGT	2 cut(s)	22, 55
AgsI	TTSAA	2 cut(s)	68, 165
AluBI	AGCT	2 cut(s)	281, 400
AluI	AGCT	2 cut(s)	281, 400
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	332
Ama87I	CYCGRG	2 cut(s)	255, 301
AoxI	GGCC	1 cut(s)	435
ApoI	RAATTY	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	129, 149
AsuC2I	CCSGG	2 cut(s)	302, 303
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	2 cut(s)	255, 301
AvaII	GGWCC	2 cut(s)	129, 149
BalI	TGGCCA	1 cut(s)	437
BbrPI	CACGTG	2 cut(s)	25, 56
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	2 cut(s)	109, 265
BcnI	CCSGG	2 cut(s)	302, 303
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	302, 303
Bme18I	GGWCC	2 cut(s)	129, 149
BmeT110I	CYCGRG	2 cut(s)	255, 301
BmgT120I	GGNCC	2 cut(s)	129, 149
BmiI	GGNNCC	2 cut(s)	130, 150
BmrFI	CCNGG	2 cut(s)	302, 303
BpuMI	CCSGG	2 cut(s)	302, 303
BsaAI	YACGTR	2 cut(s)	25, 56
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
BseDI	CCNNGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	2 cut(s)	255, 301
BsiSI	CCGG	2 cut(s)	302, 379
BslFI	GGGAC	2 cut(s)	142, 162
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	142, 162
BsnI	GGCC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	2 cut(s)	255, 301
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	342
BspANI	GGCC	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	130, 150
BspQI	GCTCTTC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	271, 410
BstAUI	TGTACA	1 cut(s)	342
BstBAI	YACGTR	2 cut(s)	25, 56
BstC8I	GCNNGC	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	300, 301
BsuRI	GGCC	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	439
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	129, 149
Cfr9I	CCCGGG	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	4 cut(s)	32, 82, 202, 334
CviJI	RGCY	6 cut(s)	11, 64, 194, 281, 400, 437
CviKI_1	RGCY	6 cut(s)	11, 64, 194, 281, 400, 437
CviQI	GTAC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	271, 410
EarI	CTCTTC	2 cut(s)	271, 410
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	129, 149
Eco72I	CACGTG	2 cut(s)	25, 56
Eco88I	CYCGRG	2 cut(s)	255, 301
EcoO109I	RGGNCCY	2 cut(s)	129, 149
FaeI	CATG	4 cut(s)	35, 85, 205, 337
FaiI	YATR	8 cut(s)	33, 83, 143, 203, 219, 242, 335, 341
FaqI	GGGAC	2 cut(s)	142, 162
FatI	CATG	4 cut(s)	31, 81, 201, 333
FblI	GTMKAC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	2 cut(s)	302, 379
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	35, 85, 205, 337
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	302, 379
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	53, 394, 475
Hpy188I	TCNGA	1 cut(s)	199
Hpy8I	GTNNAC	3 cut(s)	53, 394, 475
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	3 cut(s)	24, 55, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpySE526I	ACGT	3 cut(s)	24, 55, 372
Hsp92II	CATG	4 cut(s)	35, 85, 205, 337
HspAI	GCGC	1 cut(s)	362
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	305, 315, 392, 451
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	3 cut(s)	24, 55, 372
MaeIII	GTNAC	2 cut(s)	18, 34
MboII	GAAGA	3 cut(s)	153, 288, 427
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	2 cut(s)	70, 243
MluNI	TGGCCA	1 cut(s)	437
MnlI	CCTC	9 cut(s)	80, 85, 116, 119, 162, 205, 251, 464, 500
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	5 cut(s)	287, 311, 357, 449, 459
MslI	CAYNNNNRTG	3 cut(s)	113, 245, 338
Msp20I	TGGCCA	1 cut(s)	437
MspI	CCGG	2 cut(s)	302, 379
MspR9I	CCNGG	2 cut(s)	302, 303
MwoI	GCNNNNNNNGC	1 cut(s)	406
NciI	CCSGG	2 cut(s)	302, 303
NlaIII	CATG	4 cut(s)	35, 85, 205, 337
NlaIV	GGNNCC	2 cut(s)	130, 150
NmuCI	GTSAC	2 cut(s)	18, 34
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	103
PmaCI	CACGTG	2 cut(s)	25, 56
PmlI	CACGTG	2 cut(s)	25, 56
Ppu21I	YACGTR	2 cut(s)	25, 56
PpuMI	RGGWCCY	2 cut(s)	129, 149
PshBI	ATTAAT	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	372
Psp5II	RGGWCCY	2 cut(s)	129, 149
PspCI	CACGTG	2 cut(s)	25, 56
PspN4I	GGNNCC	2 cut(s)	130, 150
PspPI	GGNCC	2 cut(s)	129, 149
PspPPI	RGGWCCY	2 cut(s)	129, 149
PspXI	VCTCGAGB	1 cut(s)	255
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	3 cut(s)	113, 245, 338
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	5 cut(s)	287, 311, 357, 449, 459
Sau96I	GGNCC	2 cut(s)	129, 149
ScrFI	CCNGG	2 cut(s)	302, 303
SduI	GDGCHC	1 cut(s)	30
Sfr274I	CTCGAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	129, 149
SlaI	CTCGAG	1 cut(s)	255
SmaI	CCCGGG	1 cut(s)	303
SmiMI	CAYNNNNRTG	3 cut(s)	113, 245, 338
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	70, 243
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	300, 301
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	3 cut(s)	27, 58, 375
TaqI	TCGA	2 cut(s)	256, 479
TasI	AATT	2 cut(s)	70, 243
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	5 cut(s)	287, 311, 357, 449, 459
Tru9I	TTAA	5 cut(s)	287, 311, 357, 449, 459
TseFI	GTSAC	2 cut(s)	18, 34
Tsp45I	GTSAC	2 cut(s)	18, 34
TspDTI	ATGAA	4 cut(s)	116, 329, 428, 497
TspMI	CCCGGG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	129, 149
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	255
XmaI	CCCGGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.