Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000836

Physical Location & Seq

Genomic Coordinates Forward (+)

44711395 .. 44711646

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1319400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCAACTCCCTGCCTTGTACGCCAACCCCGACTCTCCGCTATACGACGAGCTCCGCGCTTCGAGACATCAGCCGTCGACTCTCATCGATCTTGACTTCAACGGCACGGATGAAACAATGTCCAACGACGTTCAAATCGACGCCAACCTCAAAATCATGTATAGGCAGATGGTTTCCAACTCCAAGAAACCGCTGTTGTTCTTTGGTTCGCCTTTGAGAGCTGGCACTGAACCAGATCCAGGGTCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

84

Amino Acids

9.2

Weight (kDa)

4.61

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09060 FvH4_3g02000 FvH4_3g04660 FvH4_3g04670 FvH4_6g20570
malus_domestica	MD05G1319100.v1.1 MD05G1319300.v1.1 MD05G1319400.v1.1 MD05G1319500.v1.1 MD10G1298400.v1.1 MD10G1298500.v1.1 MD10G1298700.v1.1 MD10G1299100.v1.1 MD10G1299300.v1.1 MD10G1299400.v1.1
prunus_persica	Prupe.4G041400_v2.0.a1 Prupe.4G041900_v2.0.a1 Prupe.8G095500_v2.0.a1
pyrus_communis	pycom05g29510 pycom10g25180 pycom10g25190 pycom10g25200
rosa_chinensis	RchiOBHm_Chr5g0007711 RchiOBHm_Chr6g0264851 RchiOBHm_Chr6g0264871 RchiOBHm_Chr6g0264881
rosa_laevigata	RLG00000014231 RLG00000031477 RLG00000031478 RLG00000031480
rosa_multiflora	Rmu_co8436503.1_g000001 Rmu_sc0000546.1_g000043 Rmu_sc0000546.1_g000046 Rmu_sc0002934.1_g000059 Rmu_sc0005098.1_g000024 Rmu_sc0011744.1_g000007 Rmu_sc0011744.1_g000008
rosa_roxburghii	Rroxscaffold_175G00432040 Rroxscaffold_1G00068700 Rroxscaffold_1G00068740 Rroxscaffold_1G00068750 Rroxscaffold_7G00203160 Rroxscaffold_7G00203180
rosa_rugosa	Rorug04G0429200 Rorug04G0429400 Rorug04G0429600 Rorug06G0014200 Rorug06G0014300
rosa_samantha	Rh5AG057300 Rh5AG057400 Rh5AG058000 Rh5BG054300 Rh5CG064200 Rh5CG064300 Rh5CG064500 Rh5DG053500 Rh5DG053800 Rh6AG134800 Rh6AG134900 Rh6BG132400 Rh6CG131000 Rh6CG131100 Rh6DG118000 Rh6DG118100
rosa_wichuraiana	Rw5G005330 Rw5G005340 Rw5G006170 Rw6G011670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	57
AciI	CCGC	3 cut(s)	38, 55, 191
AclWI	GGATC	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	239, 245
AgsI	TTSAA	2 cut(s)	100, 134
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	52, 221
AluI	AGCT	2 cut(s)	52, 221
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	58, 118
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 245
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	239, 245
Bsh1236I	CGCG	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	239, 245
BsmAI	GTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	88, 235
BspACI	CCGC	3 cut(s)	38, 55, 191
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	88, 235
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	91, 238
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	2 cut(s)	88, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	3 cut(s)	52, 73, 221
CviKI_1	RGCY	3 cut(s)	52, 73, 221
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	90, 237
DpnII	GATC	2 cut(s)	88, 235
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	43, 158, 162
FatI	CATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	77
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	54
GlaI	GCGC	1 cut(s)	58
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	32, 79
HpaII	CCGG	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	63, 92
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	4 cut(s)	50, 79, 131, 143
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	88, 235
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	24, 207, 225, 246
MaeII	ACGT	1 cut(s)	129
MalI	GATC	2 cut(s)	90, 237
MboI	GATC	2 cut(s)	88, 235
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	26, 73
MmeI	TCCRAC	2 cut(s)	147, 201
MnlI	CCTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	88, 235
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 135
PleI	GAGTC	2 cut(s)	26, 73
PpsI	GAGTC	2 cut(s)	26, 73
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	88, 235
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	26, 73
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	4 cut(s)	54, 132, 150, 223
SinI	GGWCC	1 cut(s)	243
SsiI	CCGC	3 cut(s)	38, 55, 191
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	62, 77, 87, 138
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.