MD10G1298400.v1.1

Polyphenol oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
38541805 .. 38542023
219 bp
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UTR
Exon/CDS
Intron
MD10G1298400.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGGCAACTTCTACTTAACTGGTCGGGATCCCCTGTTTTACGCCCACCATTGTAACGTGGACCGGATGTGGAACATTTGGAAAACCCTCGGGGGCAAGCGTAAGGACCCAACCGACACCGATTGGCTCGACGCTGAGTTTCTTTTCTACGACAAAAACGCGGAGATTGTGAGCTGTAAGGTCCGGGACAGCATCCATCCTGAGAAAGATCTTCGTTAA

Protein Analysis

73

Amino Acids

8.59

Weight (kDa)

6.25

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tyrosinase PF00264 1 - 29 4e-10 Common central domain of tyrosinase
PPO1_DWL PF12142 36 - 72 2.4e-12 Polyphenol oxidase middle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 161
AclWI GGATC 2 cut(s) 23, 36
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
AlwI GGATC 2 cut(s) 23, 36
Ama87I CYCGRG 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 61, 106, 181
AsuC2I CCSGG 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 3 cut(s) 61, 106, 181
BamHI GGATCC 1 cut(s) 28
BccI CCATC 1 cut(s) 204
BcnI CCSGG 1 cut(s) 185
BglII AGATCT 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 3 cut(s) 61, 106, 181
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 3 cut(s) 61, 106, 181
BmiI GGNNCC 2 cut(s) 30, 108
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 72, 192, 196
BseMII CTCAG 2 cut(s) 126, 192
BseNI ACTGG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 64, 184
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 2 cut(s) 28, 208
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 127, 193
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 30, 108
BspPI GGATC 2 cut(s) 23, 36
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 28, 208
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 135, 201
BstF5I GGATG 3 cut(s) 72, 192, 196
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 2 cut(s) 31, 211
BstMBI GATC 2 cut(s) 28, 208
BstSCI CCNGG 1 cut(s) 183
BstUI CGCG 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 28, 208
BstYI RGATCY 2 cut(s) 28, 208
BtsCI GGATG 3 cut(s) 72, 192, 196
Cac8I GCNNGC 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 61, 106, 181
CseI GACGC 1 cut(s) 140
CviJI RGCY 2 cut(s) 127, 174
CviKI_1 RGCY 2 cut(s) 127, 174
DdeI CTNAG 2 cut(s) 135, 201
DpnI GATC 2 cut(s) 30, 210
DpnII GATC 2 cut(s) 28, 208
Eco47I GGWCC 3 cut(s) 61, 106, 181
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 106
FaqI GGGAC 1 cut(s) 200
FokI GGATG 3 cut(s) 79, 179, 183
HapII CCGG 2 cut(s) 64, 184
HgaI GACGC 1 cut(s) 140
HpaII CCGG 2 cut(s) 64, 184
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 26, 200
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 135, 201
HpySE526I ACGT 1 cut(s) 57
Kzo9I GATC 2 cut(s) 28, 208
LpnPI CCDG 5 cut(s) 6, 47, 77, 197, 213
LweI GCATC 1 cut(s) 201
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 30, 210
MboI GATC 2 cut(s) 28, 208
MboII GAAGA 1 cut(s) 203
MflI RGATCY 2 cut(s) 28, 208
MnlI CCTC 1 cut(s) 98
MseI TTAA 2 cut(s) 17, 217
MspI CCGG 2 cut(s) 64, 184
MspR9I CCNGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 161
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 28, 208
NlaIV GGNNCC 2 cut(s) 30, 108
PfoI TCCNGGA 1 cut(s) 183
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 30, 108
PspPI GGNCC 3 cut(s) 61, 106, 181
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 2 cut(s) 28, 208
SaqAI TTAA 2 cut(s) 17, 217
Sau3AI GATC 2 cut(s) 28, 208
Sau96I GGNCC 3 cut(s) 61, 106, 181
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 60, 176, 183
SfaNI GCATC 1 cut(s) 201
SinI GGWCC 3 cut(s) 61, 106, 181
SsiI CCGC 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 129
Tru1I TTAA 2 cut(s) 17, 217
Tru9I TTAA 2 cut(s) 17, 217
VpaK11BI GGWCC 3 cut(s) 61, 106, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.