Rh6DG118100

Common central domain of tyrosinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000836
Physical Location & Seq
Reverse (-)
15764019 .. 15764507
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG118100.1

Sequence Viewer

Length: 489 bp
ATGGCAATGCCTGAATGGTATATGCATTCACCTTTTTTCGACAATCAGCGAGACGTTTCTCACTTCCCACCAAAAGTTAGTGATTTAAACTATGACTACGAGAAGACCGATGAGAATATGGAAAACAAAGAGCGGATGCACTTGAACATGGTCTTCATGTATAACCAGATGGTGTCTGGAGCAAAGAAGCCAGAGCTGTTCATGGGGTGCCCTTATAAGAATAGTGAGGTGGGTGTTTGTGATGGCCCTGGTACAATAGAGAGTGCTCCTCACAACACAATGCATACACTGGTTGGTAGCAATTTCAATGTCAGGAGGGAAGACATGGGAGCACTTTATTCTGCAGCTAGGGACCCTAGCTTCTATGCACACCACTCGAACTTTGACCGACTTTGGCAGGTTTGGAAGCAAATTCACAAGGTCGACTTGCAAACATTTGATCCTGATTGGCTCAACTCTAGTTTCTATTTCCATGATGAGAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110
Pfam Domains
Protein Families
PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

162

Amino Acids

19.07

Weight (kDa)

5.35

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tyrosinase PF00264 10 - 137 7.3e-16 Common central domain of tyrosinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 423
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 2 cut(s) 411, 481
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 2 cut(s) 145, 307
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 196, 347, 360
AluI AGCT 3 cut(s) 196, 347, 360
Alw21I GWGCWC 2 cut(s) 268, 334
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 434
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 2 cut(s) 411, 481
AspS9I GGNCC 2 cut(s) 245, 352
AsuHPI GGTGA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 207
BbsI GAAGAC 3 cut(s) 110, 145, 327
Bbv12I GWGCWC 2 cut(s) 268, 334
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 163, 236
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 3 cut(s) 348, 357, 459
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 245, 352
BmiI GGNNCC 3 cut(s) 209, 353, 354
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 3 cut(s) 110, 145, 327
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 1 cut(s) 356
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 268, 334
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 246
Bsp1286I GDGCHC 3 cut(s) 212, 268, 334
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 209, 353, 354
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 3 cut(s) 110, 145, 327
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 245, 352
Csp6I GTAC 1 cut(s) 252
CviAII CATG 5 cut(s) 148, 157, 202, 325, 473
CviJI RGCY 6 cut(s) 190, 196, 246, 347, 360, 451
CviKI_1 RGCY 6 cut(s) 190, 196, 246, 347, 360, 451
CviQI GTAC 1 cut(s) 252
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
DraI TTTAAA 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 247
EcoT22I ATGCAT 2 cut(s) 27, 285
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 5 cut(s) 151, 160, 205, 328, 476
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 1 cut(s) 365
FatI CATG 5 cut(s) 147, 156, 201, 324, 472
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 3 cut(s) 348, 357, 459
GluI GCNGC 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 5 cut(s) 151, 160, 205, 328, 476
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 3 cut(s) 177, 313, 443
Hpy8I GTNNAC 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 6 cut(s) 25, 139, 283, 344, 368, 430
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 5 cut(s) 151, 160, 205, 328, 476
KflI GGGWCCC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 3 cut(s) 179, 271, 329
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 126
MaeI CTAG 3 cut(s) 348, 357, 459
MaeII ACGT 1 cut(s) 54
MalI GATC 1 cut(s) 441
MbiI CCGCTC 1 cut(s) 133
MboI GATC 1 cut(s) 439
MboII GAAGA 3 cut(s) 115, 145, 332
MhlI GDGCHC 3 cut(s) 212, 268, 334
MluCI AATT 3 cut(s) 301, 411, 481
MnlI CCTC 3 cut(s) 220, 279, 309
Mph1103I ATGCAT 2 cut(s) 27, 285
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 1 cut(s) 249
NdeII GATC 1 cut(s) 439
NlaIII CATG 5 cut(s) 151, 160, 205, 328, 476
NlaIV GGNNCC 3 cut(s) 209, 353, 354
NsiI ATGCAT 2 cut(s) 27, 285
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 352
PsiI TTATAA 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 209, 353, 354
PspPI GGNCC 2 cut(s) 245, 352
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 2 cut(s) 245, 352
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 3 cut(s) 212, 268, 334
SetI ASST 8 cut(s) 34, 57, 198, 231, 349, 362, 402, 423
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 352
Sse9I AATT 3 cut(s) 301, 411, 481
SsiI CCGC 1 cut(s) 133
SspMI CTAG 3 cut(s) 348, 357, 459
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 39, 377, 423
TaqII GACCGA 2 cut(s) 122, 402
TasI AATT 3 cut(s) 301, 411, 481
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 145, 190, 474
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 2 cut(s) 411, 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 3 cut(s) 348, 357, 459
Zsp2I ATGCAT 2 cut(s) 27, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.