Rh6AG134900

Common central domain of tyrosinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000836
Physical Location & Seq
Reverse (-)
20455837 .. 20456190
354 bp
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UTR
Exon/CDS
Intron
Rh6AG134900.1

Sequence Viewer

Length: 354 bp
ATGGGAGCATTTTATTATGCAGCTAGGGAACCTAGTTTCTATGCACAACACTCGAATGTGGACCGACTTTGGGAGGTTTGGAAGCAAATTCATAAGGTTGGTTTGCAAACATTTGATCTTGATTGGCTCAACTCTAGTTTGCATTTCCATGATGAGAATTCACAGCTTGTGAGAATCAAAGTTCGTGATGTTTTGGATACTAAAAAGCTAAGGTATGTTTATGAGGAGGTTGATCTTCCTTGGCTAAATAGACGTCCAAAGCCTAACTCTATTCCATCCAAAATTGCCAACCATGCAGTGAAAATAAGAGAAAACATAACCATTTTTCCTGTAGAGTTAGGACCATGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110
Pfam Domains
Protein Families
PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

117

Amino Acids

13.81

Weight (kDa)

8.74

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tyrosinase PF00264 1 - 29 1.3e-06 Common central domain of tyrosinase
PPO1_DWL PF12142 39 - 87 1.8e-24 Polyphenol oxidase middle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 256
AcsI RAATTY 2 cut(s) 87, 157
AcyI GRCGYC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 70
AluBI AGCT 3 cut(s) 23, 166, 208
AluI AGCT 3 cut(s) 23, 166, 208
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 2 cut(s) 87, 157
AspS9I GGNCC 2 cut(s) 61, 341
AvaII GGWCC 2 cut(s) 61, 341
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BciVI GTATCC 1 cut(s) 190
BfaI CTAG 3 cut(s) 24, 33, 135
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 61, 341
BmgT120I GGNCC 2 cut(s) 61, 341
BmiI GGNNCC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp143I GATC 2 cut(s) 115, 232
BspLI GGNNCC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 2 cut(s) 115, 232
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 275
BstKTI GATC 2 cut(s) 118, 235
BstMBI GATC 2 cut(s) 115, 232
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 32
BsuI GTATCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 61, 341
CviAII CATG 3 cut(s) 149, 293, 345
CviJI RGCY 6 cut(s) 23, 127, 166, 208, 244, 262
CviKI_1 RGCY 6 cut(s) 23, 127, 166, 208, 244, 262
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 117, 234
DpnII GATC 2 cut(s) 115, 232
Eco130I CCWWGG 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 61, 341
EcoRI GAATTC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 152, 296, 348
FaiI YATR 9 cut(s) 18, 42, 93, 150, 216, 222, 294, 317, 346
FatI CATG 3 cut(s) 148, 292, 344
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 24, 33, 135
GluI GCNGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 3 cut(s) 152, 296, 348
HinfI GANTC 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 119, 185
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 5 cut(s) 20, 44, 106, 142, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 3 cut(s) 152, 296, 348
Kzo9I GATC 2 cut(s) 115, 232
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 1 cut(s) 342
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 3 cut(s) 24, 33, 135
MaeII ACGT 1 cut(s) 253
MalI GATC 2 cut(s) 117, 234
MboI GATC 2 cut(s) 115, 232
MboII GAAGA 1 cut(s) 227
MluCI AATT 3 cut(s) 87, 157, 282
MnlI CCTC 3 cut(s) 67, 217, 220
MslI CAYNNNNRTG 2 cut(s) 54, 147
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 2 cut(s) 115, 232
NlaIII CATG 3 cut(s) 152, 296, 348
NlaIV GGNNCC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 61, 341
RseI CAYNNNNRTG 2 cut(s) 54, 147
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 115, 232
Sau96I GGNCC 2 cut(s) 61, 341
SetI ASST 9 cut(s) 25, 34, 78, 99, 168, 210, 215, 231, 256
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 61, 341
SmiMI CAYNNNNRTG 2 cut(s) 54, 147
Sse9I AATT 3 cut(s) 87, 157, 282
SspMI CTAG 3 cut(s) 24, 33, 135
StyI CCWWGG 1 cut(s) 239
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 53
TaqII GACCGA 1 cut(s) 78
TasI AATT 3 cut(s) 87, 157, 282
TfiI GAWTC 1 cut(s) 174
TscAI CASTG 1 cut(s) 303
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 2 cut(s) 61, 341
XapI RAATTY 2 cut(s) 87, 157
XspI CTAG 3 cut(s) 24, 33, 135
ZraI GACGTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.