RchiOBHm_Chr6g0264871

Common central domain of tyrosinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
20192671 .. 20193117
447 bp
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UTR
Exon/CDS
Intron
PRQ23754

Sequence Viewer

Length: 447 bp
ATGCACTCATGGGTGGGTAGCAATTTCAATGTCAGGAGGGAAGACATGGGAGCATTTTATTATGTAGCTAGGGAACCTAGTTTCTATGCACAACACTCCAATGTGGACAGACTTTGGGAGGTTTGGAAGCAAATTTATAAGGTTGGTTTGCAAACATTTGATCCTTATTGGCTCAACTCTAGTTTCTATTTCCATGATGAGAATTCACAGCTTGTGAGAATCAAAGTTCGTGATGTTTTGGATACTATAAAGCTGAGGTATGTTTATGAGGAGGTTGATCTTGTTAGTGTGAGTCATCGTTCCCTATTAGGAATAGACTACACGGGAATATATTGTTGTAATTACTTACCTTATGTATGTTGTGTAGTACGGTTGTACACAATAGGCGTAGTACGTTGTAGTACGATTGTAATCTGTTTATATACACCACAGAATGGGTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

17.5

Weight (kDa)

6.87

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tyrosinase PF00264 1 - 44 1.1e-08 Common central domain of tyrosinase
PPO1_DWL PF12142 54 - 94 4.3e-19 Polyphenol oxidase middle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 434
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 2 cut(s) 132, 202
AfaI GTAC 4 cut(s) 369, 377, 393, 403
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 3 cut(s) 68, 211, 253
AluI AGCT 3 cut(s) 68, 211, 253
AlwI GGATC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 132, 202
BbsI GAAGAC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 235
BfaI CTAG 3 cut(s) 69, 78, 180
BfuI GTATCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 410
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 434
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 160, 277
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 375
BssMI GATC 2 cut(s) 160, 277
Bst4CI ACNGT 1 cut(s) 372
BstAUI TGTACA 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 254
BstKTI GATC 2 cut(s) 163, 280
BstMBI GATC 2 cut(s) 160, 277
BstV2I GAAGAC 1 cut(s) 48
BsuI GTATCC 1 cut(s) 235
Csp6I GTAC 4 cut(s) 368, 376, 392, 402
CviAII CATG 3 cut(s) 9, 46, 194
CviJI RGCY 4 cut(s) 68, 172, 211, 253
CviKI_1 RGCY 4 cut(s) 68, 172, 211, 253
CviQI GTAC 4 cut(s) 368, 376, 392, 402
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 162, 279
DpnII GATC 2 cut(s) 160, 277
EcoRI GAATTC 1 cut(s) 202
FaeI CATG 3 cut(s) 12, 49, 197
FatI CATG 3 cut(s) 8, 45, 193
FspBI CTAG 3 cut(s) 69, 78, 180
Hin1II CATG 3 cut(s) 12, 49, 197
HinfI GANTC 2 cut(s) 219, 292
Hpy166II GTNNAC 2 cut(s) 106, 378
Hpy188III TCNNGA 2 cut(s) 34, 230
Hpy8I GTNNAC 2 cut(s) 106, 378
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 3 cut(s) 4, 89, 151
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 3 cut(s) 12, 49, 197
Kzo9I GATC 2 cut(s) 160, 277
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 1 cut(s) 19
MaeI CTAG 3 cut(s) 69, 78, 180
MaeII ACGT 1 cut(s) 394
MalI GATC 2 cut(s) 162, 279
MboI GATC 2 cut(s) 160, 277
MboII GAAGA 1 cut(s) 53
MluCI AATT 5 cut(s) 22, 132, 202, 340, 442
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 5 cut(s) 30, 112, 249, 262, 265
MslI CAYNNNNRTG 1 cut(s) 99
NdeII GATC 2 cut(s) 160, 277
NlaIII CATG 3 cut(s) 12, 49, 197
NlaIV GGNNCC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 434
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PsiI TTATAA 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 75
RsaI GTAC 4 cut(s) 369, 377, 393, 403
RsaNI GTAC 4 cut(s) 368, 376, 392, 402
RseI CAYNNNNRTG 1 cut(s) 99
Sau3AI GATC 2 cut(s) 160, 277
SchI GAGTC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 5 cut(s) 22, 132, 202, 340, 442
SspMI CTAG 3 cut(s) 69, 78, 180
TaaI ACNGT 1 cut(s) 372
TaiI ACGT 1 cut(s) 397
TasI AATT 5 cut(s) 22, 132, 202, 340, 442
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 434
XapI RAATTY 2 cut(s) 132, 202
XspI CTAG 3 cut(s) 69, 78, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.