Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000836

Physical Location & Seq

Genomic Coordinates Forward (+)

44711709 .. 44712474

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1319500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGGAATTTTTACTCCGCTGCTAGGGATCCTATATTTTTTTCGCACCATTCGAATGTGGATCGAATGTGGAATATTTGGAAAAATATAGGGAACAAAAATAAAGATATTAACGATAAGGATTGGTTGGATACGGGGTTTTTGTTTTATGACGAGAATGCTGAACTTGTTAGGGTTACGGTGAGGGACTCTCTTGATAATAAAAGGCTTGGGTATACGTATGAAGATGTTGACATTCCGTGGCTCAAGTCTAAACCGATGCCACGTCGGACAAAGCTTGCGAAAATGGCAAAGGCAGCTGGTGTGGCCAAGGCCGCTGAGACGACGTCATTAGGGAAGGTGGTGGCGAAGGAAAGGAAGAAGAGCAAGAGTTGCTTGAGATTGGGGTTAATGGACTTATTGGAGGATTTGGGTGCTGAAGATGATGAGAGTGTGGTGGTGACTTTGGTGCCCAGGTGTGGGGCTCAGGCTGTTAAGATTGGTAGCATCAAAATTGAGTTTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

170

Amino Acids

19.08

Weight (kDa)

9.0

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyrosinase	PF00264	1 - 29	7.2e-10	Common central domain of tyrosinase
PPO1_DWL	PF12142	36 - 86	7e-26	Polyphenol oxidase middle domain
PPO1_KFDV	PF12143	110 - 167	9.9e-19	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09060 FvH4_3g02000 FvH4_3g04660 FvH4_3g04670 FvH4_6g20570
malus_domestica	MD05G1319100.v1.1 MD05G1319300.v1.1 MD05G1319400.v1.1 MD05G1319500.v1.1 MD10G1298400.v1.1 MD10G1298500.v1.1 MD10G1298700.v1.1 MD10G1299100.v1.1 MD10G1299300.v1.1 MD10G1299400.v1.1
prunus_persica	Prupe.4G041400_v2.0.a1 Prupe.4G041900_v2.0.a1 Prupe.8G095500_v2.0.a1
pyrus_communis	pycom05g29510 pycom10g25180 pycom10g25190 pycom10g25200
rosa_chinensis	RchiOBHm_Chr5g0007711 RchiOBHm_Chr6g0264851 RchiOBHm_Chr6g0264871 RchiOBHm_Chr6g0264881
rosa_laevigata	RLG00000014231 RLG00000031477 RLG00000031478 RLG00000031480
rosa_multiflora	Rmu_co8436503.1_g000001 Rmu_sc0000546.1_g000043 Rmu_sc0000546.1_g000046 Rmu_sc0002934.1_g000059 Rmu_sc0005098.1_g000024 Rmu_sc0011744.1_g000007 Rmu_sc0011744.1_g000008
rosa_roxburghii	Rroxscaffold_175G00432040 Rroxscaffold_1G00068700 Rroxscaffold_1G00068740 Rroxscaffold_1G00068750 Rroxscaffold_7G00203160 Rroxscaffold_7G00203180
rosa_rugosa	Rorug04G0429200 Rorug04G0429400 Rorug04G0429600 Rorug06G0014200 Rorug06G0014300
rosa_samantha	Rh5AG057300 Rh5AG057400 Rh5AG058000 Rh5BG054300 Rh5CG064200 Rh5CG064300 Rh5CG064500 Rh5DG053500 Rh5DG053800 Rh6AG134800 Rh6AG134900 Rh6BG132400 Rh6CG131000 Rh6CG131100 Rh6DG118000 Rh6DG118100
rosa_wichuraiana	Rw5G005330 Rw5G005340 Rw5G006170 Rw6G011670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	2 cut(s)	18, 315
AclWI	GGATC	3 cut(s)	23, 36, 69
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	24, 458, 459
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	2 cut(s)	277, 299
AluI	AGCT	2 cut(s)	277, 299
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	3 cut(s)	23, 36, 69
AoxI	GGCC	2 cut(s)	306, 312
ApeKI	GCWGC	2 cut(s)	20, 296
ApoI	RAATTY	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	193, 451
AsuII	TTCGAA	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	7, 308
BciT130I	CCWGG	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	21, 297, 315
BlsI	GCNGC	3 cut(s)	22, 298, 316
Bme1390I	CCNGG	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	30, 450
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	249, 495
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	230, 397
BsaAI	YACGTR	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	239, 309, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 458, 459
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	239, 309, 452
BseLI	CCNNNNNNNGG	3 cut(s)	24, 458, 459
BseMII	CTCAG	2 cut(s)	309, 479
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	7, 308
BshFI	GGCC	2 cut(s)	308, 314
BshNI	GGYRCC	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	24, 458, 459
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	308, 314
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	453, 466
Bsp143I	GATC	2 cut(s)	28, 61
BspACI	CCGC	2 cut(s)	18, 315
BspANI	GGCC	2 cut(s)	308, 314
BspCNI	CTCAG	2 cut(s)	310, 478
BspLI	GGNNCC	2 cut(s)	30, 450
BspPI	GGATC	3 cut(s)	23, 36, 69
BspQI	GCTCTTC	1 cut(s)	356
BspT104I	TTCGAA	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	448
BssECI	CCNNGG	3 cut(s)	239, 309, 452
BssMI	GATC	2 cut(s)	28, 61
BssNAI	GTATAC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	309
Bst1107I	GTATAC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	318, 465
BstDSI	CCRYGG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	31, 64
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	28, 61
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 296, 305, 314, 372
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	453
BstSNI	TACGTA	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	7, 308
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZ17I	GTATAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	308, 314
BtgI	CCRYGG	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	279
CviJI	RGCY	8 cut(s)	208, 244, 277, 299, 308, 314, 464, 470
CviKI_1	RGCY	8 cut(s)	208, 244, 277, 299, 308, 314, 464, 470
DdeI	CTNAG	2 cut(s)	318, 465
DpnI	GATC	2 cut(s)	30, 63
DpnII	GATC	2 cut(s)	28, 61
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco105I	TACGTA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	314
FaiI	YATR	5 cut(s)	35, 89, 150, 216, 222
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	3 cut(s)	21, 297, 315
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	3 cut(s)	21, 297, 315
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	3 cut(s)	21, 297, 315
HaeIII	GGCC	2 cut(s)	308, 314
Hin1I	GRCGYC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	2 cut(s)	193, 451
Hpy166II	GTNNAC	2 cut(s)	216, 232
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	216, 232
Hpy99I	CGWCG	2 cut(s)	270, 328
HpyAV	CCTTC	2 cut(s)	331, 343
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	3 cut(s)	218, 265, 326
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 296, 305, 314, 372
HpyF3I	CTNAG	2 cut(s)	318, 465
HpySE526I	ACGT	3 cut(s)	218, 265, 326
Hsp92I	GRCGYC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	28, 61
LguI	GCTCTTC	1 cut(s)	356
LpnPI	CCDG	4 cut(s)	285, 439, 452, 466
Lsp1109I	GCAGC	2 cut(s)	7, 308
LweI	GCATC	2 cut(s)	249, 495
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	3 cut(s)	218, 265, 326
MaeIII	GTNAC	2 cut(s)	175, 439
MalI	GATC	2 cut(s)	30, 63
MboI	GATC	2 cut(s)	28, 61
MboII	GAAGA	5 cut(s)	236, 370, 373, 431, 494
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	453, 466
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	7, 492
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	108, 248
MnlI	CCTC	2 cut(s)	177, 397
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	111, 389, 474
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	3 cut(s)	20, 299, 317
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	5 cut(s)	287, 296, 305, 314, 372
NdeII	GATC	2 cut(s)	28, 61
NlaIV	GGNNCC	2 cut(s)	30, 450
NmuCI	GTSAC	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	22, 298, 316
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	30, 450
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	111, 389, 474
SatI	GCNGC	3 cut(s)	21, 297, 315
Sau3AI	GATC	2 cut(s)	28, 61
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	453, 466
SetI	ASST	7 cut(s)	221, 268, 279, 301, 329, 342, 458
SfaNI	GCATC	2 cut(s)	249, 495
SfuI	TTCGAA	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	245, 376
SmoI	CTYRAG	2 cut(s)	245, 376
SnaBI	TACGTA	1 cut(s)	219
Sse9I	AATT	2 cut(s)	7, 492
SsiI	CCGC	2 cut(s)	18, 315
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	3 cut(s)	221, 268, 329
TaqI	TCGA	2 cut(s)	53, 64
TasI	AATT	2 cut(s)	7, 492
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	111, 389, 474
Tru9I	TTAA	3 cut(s)	111, 389, 474
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	20, 296
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	1 cut(s)	24
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.