Rmu_co8436503.1_g000001

Polyphenol oxidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436503.1
Physical Location & Seq
Forward (+)
124 .. 1545
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436503.1_g000001.1.cds

Sequence Viewer

Length: 1422 bp
atggcttctctctcacctccaatagtcaccacgactaccatttcctctactacaacttccctttctcccttctcccacaaaaactctcagatttccttaatcgggaaacctaggcagtgcatccgtactaaggtttcatgcaaagccgcaaatagcgaccaaaatgatgcacaaccttctgtagctaagttcgataggagaaatgtgcttctcggtcttggaggcctatatggggtggccggtcttggaagcgatcccttcgcttttgccaagcccgtcgccccacctgacgtgtcaaaatgcgggccggcagacttgcctgatggcgcaacaccgacaaattgttgccctccagcggcctcaaagatcatcgacttcaagctgccctcgccaaccccattgcgtgttaggcccgcggctcacgccgtggatgatgcctacattgcaaaatacaccaaggccatggagctcatgaaagccctccccgacgatgatccccgtagtttcaagcaacaagccaacgtgcattgtgcttattgtgatggtgcttatgaccaagccgggtttccggatcttgagctccaaatccacaactcatggctcttctttcccttccatagatactacttgtacttctacgagagaatcttgggtaagctcatcaacgacccgacatttgctttgccgttctggaactgggactcccctgctggcatgcagttgcctgccttgttcgccaatcccaaatcacctctttacgacaagttcagagccgccgctcaccagccgccgaccctgatcgacctcgatttcaacggtaccgaggacaagacatcaaacacaactcaaatcaacagcaacctaagcattatgtaccgtcaaatggtgtccaacgccaagaacgctcagctcttttttggcaacccctacagggctggggacgagcctgacccaggtggtggctctatcgagggaaccccacacgggccagtccacttgtggactggtgacagcacccagcctaactttgaggacatgggaaacttctactcagccggtagagatcctattttcttctcgcaccactccaatgttgataggatgtggagtatatggaagaccctagctcccaaaaacaaagacatcaccgactctgattggttagactccggcttcctattctacgacgagaatgcaaacatggtgcgcgtgaaggtacgcgactgccttgattccaaaaatctcggctatgtgtatcaagacgtggagattccatggctgaactccaagccaacgcccagaaggtcaaaggtggcattcagcaatatagccaagaagctcggtgtggctaacgccgccacctcatcagccaaggtggtgaagatcactgattttcctatatctttgaaccaaaaaattagc

Protein Analysis

474

Amino Acids

52.29

Weight (kDa)

8.0

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 818
AccB1I GGYRCC 1 cut(s) 818
AccB7I CCANNNNNTGG 1 cut(s) 959
AccBSI CCGCTC 1 cut(s) 779
AccII CGCG 3 cut(s) 416, 1209, 1221
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 9 cut(s) 147, 303, 356, 414, 416, 774, 777, 788, 1356
AclWI GGATC 4 cut(s) 248, 488, 579, 1058
AcoI YGGCCR 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 427
AfaI GTAC 5 cut(s) 127, 632, 820, 875, 1218
AfiI CCNNNNNNNGG 9 cut(s) 102, 130, 232, 355, 883, 931, 953, 959, 984
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 4 cut(s) 379, 508, 814, 1408
AjiI CACGTC 2 cut(s) 292, 1264
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AloI GAACNNNNNNTCC 2 cut(s) 686, 718
AluBI AGCT 8 cut(s) 185, 382, 469, 580, 658, 910, 1127, 1339
AluI AGCT 8 cut(s) 185, 382, 469, 580, 658, 910, 1127, 1339
Alw21I GWGCWC 2 cut(s) 471, 582
AlwI GGATC 4 cut(s) 248, 488, 579, 1058
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 7 cut(s) 223, 237, 305, 357, 410, 459, 986
ApeKI GCWGC 1 cut(s) 382
ArsI GACNNNNNNTTYG 4 cut(s) 659, 664, 691, 696
Asp718I GGTACC 1 cut(s) 818
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 2 cut(s) 329, 1209
AspS9I GGNCC 3 cut(s) 305, 411, 986
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 7 cut(s) 6, 19, 741, 773, 1019, 1138, 1390
AvrII CCTAGG 1 cut(s) 110
BanI GGYRCC 1 cut(s) 818
BanII GRGCYC 2 cut(s) 471, 582
BbsI GAAGAC 1 cut(s) 1124
Bbv12I GWGCWC 2 cut(s) 471, 582
BbvI GCAGC 1 cut(s) 369
BccI CCATC 2 cut(s) 317, 536
BceAI ACGGC 2 cut(s) 410, 670
BcgI CGANNNNNNTGC 2 cut(s) 1175, 1209
BciT130I CCWGG 1 cut(s) 954
BcnI CCSGG 1 cut(s) 562
BfaI CTAG 2 cut(s) 111, 1124
BfmI CTRYAG 2 cut(s) 180, 928
BisI GCNGC 8 cut(s) 147, 357, 383, 417, 774, 777, 788, 1356
BlnI CCTAGG 1 cut(s) 110
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 8 cut(s) 148, 358, 384, 418, 775, 778, 789, 1357
Bme1390I CCNGG 2 cut(s) 562, 954
BmgBI CACGTC 2 cut(s) 292, 1264
BmgT120I GGNCC 3 cut(s) 305, 411, 986
BmiI GGNNCC 2 cut(s) 820, 976
BmrFI CCNGG 2 cut(s) 562, 954
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 3 cut(s) 129, 157, 424
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 1124
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 863
Bpu1102I GCTNAGC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 562
BsaJI CCNNGG 9 cut(s) 110, 414, 426, 456, 462, 822, 952, 1274, 1371
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 4 cut(s) 686, 716, 1111, 1141
Bsc4I CCNNNNNNNGG 9 cut(s) 102, 130, 232, 355, 883, 931, 953, 959, 984
Bse118I RCCGGY 3 cut(s) 239, 307, 1055
Bse1I ACTGG 3 cut(s) 701, 989, 1009
Bse3DI GCAATG 2 cut(s) 398, 441
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 9 cut(s) 110, 414, 426, 456, 462, 822, 952, 1274, 1371
BseGI GGATG 3 cut(s) 120, 436, 1107
BseLI CCNNNNNNNGG 9 cut(s) 102, 130, 232, 355, 883, 931, 953, 959, 984
BseMI GCAATG 2 cut(s) 398, 441
BseMII CTCAG 3 cut(s) 101, 920, 1065
BseNI ACTGG 3 cut(s) 701, 989, 1009
BseXI GCAGC 1 cut(s) 369
BseYI CCCAGC 2 cut(s) 935, 1017
Bsh1236I CGCG 3 cut(s) 416, 1209, 1221
BshFI GGCC 7 cut(s) 225, 239, 307, 359, 412, 461, 988
BshNI GGYRCC 1 cut(s) 818
BsiHKAI GWGCWC 2 cut(s) 471, 582
BsiSI CCGG 6 cut(s) 240, 308, 561, 569, 1056, 1170
BslFI GGGAC 2 cut(s) 713, 953
BslI CCNNNNNNNGG 9 cut(s) 102, 130, 232, 355, 883, 931, 953, 959, 984
BsmFI GGGAC 2 cut(s) 713, 953
BsmI GAATGC 2 cut(s) 1198, 1316
BsnI GGCC 7 cut(s) 225, 239, 307, 359, 412, 461, 988
Bsp1286I GDGCHC 2 cut(s) 471, 582
Bsp13I TCCGGA 1 cut(s) 568
Bsp143I GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
Bsp1720I GCTNAGC 1 cut(s) 906
Bsp19I CCATGG 2 cut(s) 462, 1274
BspACI CCGC 9 cut(s) 147, 303, 356, 414, 416, 774, 777, 788, 1356
BspANI GGCC 7 cut(s) 225, 239, 307, 359, 412, 461, 988
BspCNI CTCAG 3 cut(s) 100, 919, 1064
BspEI TCCGGA 1 cut(s) 568
BspFNI CGCG 3 cut(s) 416, 1209, 1221
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 820, 976
BspPI GGATC 4 cut(s) 248, 488, 579, 1058
BspQI GCTCTTC 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 398, 441
BsrFI RCCGGY 3 cut(s) 239, 307, 1055
BsrI ACTGG 3 cut(s) 701, 989, 1009
BssAI RCCGGY 3 cut(s) 239, 307, 1055
BssECI CCNNGG 9 cut(s) 110, 414, 426, 456, 462, 822, 952, 1274, 1371
BssMI GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
BssT1I CCWWGG 5 cut(s) 110, 456, 462, 1274, 1371
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 2 cut(s) 818, 878
Bst6I CTCTTC 1 cut(s) 608
BstC8I GCNNGC 6 cut(s) 305, 309, 414, 712, 716, 726
BstDEI CTNAG 6 cut(s) 87, 129, 186, 863, 906, 1051
BstDSI CCRYGG 4 cut(s) 414, 426, 462, 1274
BstENI CCTNNNNNAGG 1 cut(s) 951
BstF5I GGATG 3 cut(s) 120, 436, 1107
BstFNI CGCG 3 cut(s) 416, 1209, 1221
BstHHI GCGC 2 cut(s) 329, 1209
BstKTI GATC 7 cut(s) 256, 369, 496, 574, 801, 1066, 1386
BstMBI GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
BstMWI GCNNNNNNNGC 8 cut(s) 388, 409, 422, 443, 734, 864, 902, 1355
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 2 cut(s) 560, 952
BstSFI CTRYAG 2 cut(s) 180, 928
BstUI CGCG 3 cut(s) 416, 1209, 1221
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 1 cut(s) 1124
BstX2I RGATCY 2 cut(s) 571, 1063
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 2 cut(s) 571, 1063
BsuRI GGCC 7 cut(s) 225, 239, 307, 359, 412, 461, 988
BtgI CCRYGG 4 cut(s) 414, 426, 462, 1274
BtrI CACGTC 2 cut(s) 292, 1264
BtsCI GGATG 3 cut(s) 120, 436, 1107
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 122, 1386
Cac8I GCNNGC 6 cut(s) 305, 309, 414, 712, 716, 726
CciI TCATGA 1 cut(s) 471
CfoI GCGC 2 cut(s) 329, 1209
Cfr10I RCCGGY 3 cut(s) 239, 307, 1055
Cfr13I GGNCC 3 cut(s) 305, 411, 986
Cfr42I CCGCGG 1 cut(s) 417
Csp6I GTAC 5 cut(s) 126, 631, 819, 874, 1217
CviAII CATG 8 cut(s) 138, 463, 472, 597, 715, 1036, 1201, 1275
CviQI GTAC 5 cut(s) 126, 631, 819, 874, 1217
DdeI CTNAG 6 cut(s) 87, 129, 186, 863, 906, 1051
DpnI GATC 7 cut(s) 255, 368, 495, 573, 800, 1065, 1385
DpnII GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
DraIII CACNNNGTG 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
Ecl136II GAGCTC 2 cut(s) 469, 580
Eco130I CCWWGG 5 cut(s) 110, 456, 462, 1274, 1371
Eco147I AGGCCT 1 cut(s) 225
Eco24I GRGCYC 2 cut(s) 471, 582
Eco53kI GAGCTC 2 cut(s) 469, 580
EcoICRI GAGCTC 2 cut(s) 469, 580
EcoNI CCTNNNNNAGG 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 5 cut(s) 110, 456, 462, 1274, 1371
EcoT38I GRGCYC 2 cut(s) 471, 582
ErhI CCWWGG 5 cut(s) 110, 456, 462, 1274, 1371
FaeI CATG 8 cut(s) 141, 466, 475, 600, 718, 1039, 1204, 1278
FaqI GGGAC 2 cut(s) 713, 953
FatI CATG 8 cut(s) 137, 462, 471, 596, 714, 1035, 1200, 1274
FauI CCCGC 2 cut(s) 296, 421
Fnu4HI GCNGC 8 cut(s) 147, 357, 383, 417, 774, 777, 788, 1356
FokI GGATG 3 cut(s) 107, 443, 1114
FriOI GRGCYC 2 cut(s) 471, 582
Fsp4HI GCNGC 8 cut(s) 147, 357, 383, 417, 774, 777, 788, 1356
FspBI CTAG 2 cut(s) 111, 1124
GlaI GCGC 2 cut(s) 328, 1208
GluI GCNGC 8 cut(s) 147, 357, 383, 417, 774, 777, 788, 1356
GsaI CCCAGC 2 cut(s) 939, 1021
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 7 cut(s) 225, 239, 307, 359, 412, 461, 988
HapII CCGG 6 cut(s) 240, 308, 561, 569, 1056, 1170
HhaI GCGC 2 cut(s) 329, 1209
Hin1II CATG 8 cut(s) 141, 466, 475, 600, 718, 1039, 1204, 1278
Hin6I GCGC 2 cut(s) 327, 1207
HinP1I GCGC 2 cut(s) 327, 1207
HinfI GANTC 6 cut(s) 645, 701, 1151, 1166, 1232, 1270
HpaII CCGG 6 cut(s) 240, 308, 561, 569, 1056, 1170
HphI GGTGA 7 cut(s) 6, 19, 741, 773, 1019, 1138, 1390
Hpy166II GTNNAC 2 cut(s) 994, 1002
Hpy188I TCNGA 3 cut(s) 90, 770, 1156
Hpy188III TCNNGA 6 cut(s) 103, 472, 569, 575, 691, 1259
Hpy8I GTNNAC 2 cut(s) 994, 1002
Hpy99I CGWCG 3 cut(s) 281, 491, 1190
HpyAV CCTTC 6 cut(s) 79, 186, 268, 622, 1207, 1296
HpyCH4III ACNGT 2 cut(s) 818, 878
HpyCH4IV ACGT 3 cut(s) 291, 522, 1263
HpyCH4V TGCA 7 cut(s) 120, 141, 170, 446, 526, 718, 1196
HpyF10VI GCNNNNNNNGC 8 cut(s) 388, 409, 422, 443, 734, 864, 902, 1355
HpyF3I CTNAG 6 cut(s) 87, 129, 186, 863, 906, 1051
HpySE526I ACGT 3 cut(s) 291, 522, 1263
Hsp92II CATG 8 cut(s) 141, 466, 475, 600, 718, 1039, 1204, 1278
HspAI GCGC 2 cut(s) 327, 1207
Kpn2I TCCGGA 1 cut(s) 568
KpnI GGTACC 1 cut(s) 822
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
KspI CCGCGG 1 cut(s) 417
Kzo9I GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
LguI GCTCTTC 1 cut(s) 608
LmnI GCTCC 3 cut(s) 466, 585, 1132
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 3 cut(s) 129, 157, 424
MaeI CTAG 2 cut(s) 111, 1124
MaeII ACGT 3 cut(s) 291, 522, 1263
MaeIII GTNAC 2 cut(s) 25, 1007
MalI GATC 7 cut(s) 255, 368, 495, 573, 800, 1065, 1385
MbiI CCGCTC 1 cut(s) 779
MboI GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
MboII GAAGA 4 cut(s) 595, 1066, 1129, 1393
MflI RGATCY 2 cut(s) 571, 1063
MhlI GDGCHC 2 cut(s) 471, 582
MluCI AATT 2 cut(s) 340, 1416
MlyI GAGTC 3 cut(s) 695, 1145, 1160
MmeI TCCRAC 1 cut(s) 915
MroI TCCGGA 1 cut(s) 568
MroNI GCCGGC 1 cut(s) 307
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 2 cut(s) 356, 416
MspI CCGG 6 cut(s) 240, 308, 561, 569, 1056, 1170
MspR9I CCNGG 2 cut(s) 562, 954
Mva1269I GAATGC 2 cut(s) 1198, 1316
MvaI CCWGG 1 cut(s) 954
MvnI CGCG 3 cut(s) 416, 1209, 1221
MwoI GCNNNNNNNGC 8 cut(s) 388, 409, 422, 443, 734, 864, 902, 1355
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 1 cut(s) 562
NcoI CCATGG 2 cut(s) 462, 1274
NdeII GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 8 cut(s) 141, 466, 475, 600, 718, 1039, 1204, 1278
NlaIV GGNNCC 2 cut(s) 820, 976
NmeAIII GCCGAG 1 cut(s) 1224
NmuCI GTSAC 2 cut(s) 25, 1007
NspI RCATGY 1 cut(s) 718
PaeI GCATGC 1 cut(s) 718
PagI TCATGA 1 cut(s) 471
PceI AGGCCT 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 608
PctI GAATGC 2 cut(s) 1198, 1316
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 645, 1232, 1270
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 8 cut(s) 148, 358, 384, 418, 775, 778, 789, 1357
PleI GAGTC 3 cut(s) 695, 1145, 1160
PpsI GAGTC 3 cut(s) 695, 1145, 1160
Psp124BI GAGCTC 2 cut(s) 471, 582
Psp6I CCWGG 1 cut(s) 952
PspFI CCCAGC 2 cut(s) 935, 1017
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 2 cut(s) 820, 976
PspPI GGNCC 3 cut(s) 305, 411, 986
PsuI RGATCY 2 cut(s) 571, 1063
RsaI GTAC 5 cut(s) 127, 632, 820, 875, 1218
RsaNI GTAC 5 cut(s) 126, 631, 819, 874, 1217
RseI CAYNNNNRTG 1 cut(s) 1089
SacI GAGCTC 2 cut(s) 471, 582
SacII CCGCGG 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 608
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 8 cut(s) 147, 357, 383, 417, 774, 777, 788, 1356
Sau3AI GATC 7 cut(s) 253, 366, 493, 571, 798, 1063, 1383
Sau96I GGNCC 3 cut(s) 305, 411, 986
SchI GAGTC 3 cut(s) 695, 1145, 1160
ScrFI CCNGG 2 cut(s) 562, 954
SduI GDGCHC 2 cut(s) 471, 582
SfaNI GCATC 3 cut(s) 129, 157, 424
SfcI CTRYAG 2 cut(s) 180, 928
Sfr303I CCGCGG 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SphI GCATGC 1 cut(s) 718
Sse9I AATT 2 cut(s) 340, 1416
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 9 cut(s) 147, 303, 356, 414, 416, 774, 777, 788, 1356
SspMI CTAG 2 cut(s) 111, 1124
SstI GAGCTC 2 cut(s) 471, 582
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 560, 952
StyI CCWWGG 5 cut(s) 110, 456, 462, 1274, 1371
TaaI ACNGT 2 cut(s) 818, 878
TaiI ACGT 3 cut(s) 294, 525, 1266
TaqI TCGA 5 cut(s) 192, 372, 801, 807, 969
TaqII GACCGA 1 cut(s) 203
TasI AATT 2 cut(s) 340, 1416
TatI WGTACW 1 cut(s) 630
TauI GCSGC 7 cut(s) 149, 359, 419, 776, 779, 790, 1358
TfiI GAWTC 3 cut(s) 645, 1232, 1270
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 2 cut(s) 122, 1393
TseFI GTSAC 2 cut(s) 25, 1007
TseI GCWGC 1 cut(s) 382
Tsp45I GTSAC 2 cut(s) 25, 1007
TspDTI ATGAA 2 cut(s) 126, 488
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 122, 1393
Van91I CCANNNNNTGG 1 cut(s) 959
XagI CCTNNNNNAGG 1 cut(s) 951
XceI RCATGY 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 2 cut(s) 996, 1001
XmaJI CCTAGG 1 cut(s) 110
XspI CTAG 2 cut(s) 111, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.