MD07G1108900.v1.1

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001819
Physical Location & Seq
Reverse (-)
12512264 .. 12512512
249 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1108900.v1.1.491

Sequence Viewer

Length: 249 bp
ATGAGGACTTTGGTGGAGGATGGGCCAGAGAAATGCCATAGTCACTTCAGTGAATATATTAAGAAAGGAATTGAAGCAGATAACATCAAGGAGTTGTACAAGAAAGTTCATGTTACCATCGTTGTTGATCCTACAATCAAGAAGACTGAAAAGCTGGCTCCTAAAAAACGCAAGAAGTATAACCTGAAGAAGCTTACCTTTGATGAGAGGAAGAAAAAGTTGGTTGAGAGGTTGAAAGGCTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

83

Amino Acids

9.74

Weight (kDa)

9.85

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18_c PF14204 29 - 81 3.2e-12 Ribosomal L18 C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcuI CTGAAG 2 cut(s) 31, 206
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 3 cut(s) 74, 235, 245
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 1 cut(s) 48
AluBI AGCT 2 cut(s) 154, 193
AluI AGCT 2 cut(s) 154, 193
AlwI GGATC 1 cut(s) 122
AoxI GGCC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 149
BccI CCATC 2 cut(s) 14, 125
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 149
BseGI GGATG 1 cut(s) 25
BshFI GGCC 1 cut(s) 25
BsnI GGCC 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 96
BssMI GATC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 156
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 110
CviJI RGCY 5 cut(s) 25, 154, 158, 193, 240
CviKI_1 RGCY 5 cut(s) 25, 154, 158, 193, 240
CviQI GTAC 1 cut(s) 97
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 31, 206
FaeI CATG 1 cut(s) 113
FaiI YATR 4 cut(s) 39, 57, 111, 180
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 1 cut(s) 109
FokI GGATG 1 cut(s) 32
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 139
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 39, 140, 197
MaeIII GTNAC 2 cut(s) 41, 112
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 154, 199, 223
MluCI AATT 1 cut(s) 69
MnlI CCTC 3 cut(s) 10, 201, 222
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 48
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 23
SetI ASST 5 cut(s) 156, 186, 195, 200, 233
SgeI CNNG 8 cut(s) 38, 100, 112, 122, 151, 167, 184, 196
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 1 cut(s) 69
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 96
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.