Prupe.7G266900_v2.0.a1

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001819
Physical Location & Seq
Forward (+)
22003960 .. 22007240
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G266900.2

Sequence Viewer

Length: 897 bp
ATGGCCTTCGTCAAAGCTCAAAAGTCCAAGGCATACTACAAGCGGTTTCAAGTCAAGTACAAGAGAAGGCGAGAGGGAAAGACTGATTACCGAGCCAGAATTAGGCTCATTAACCAAGACAAAAACAAGTACAACACACCCAAGTATCGGTTTGTTGTGAGATTTACCAACAAGGATATTGTTGCCCAAATTGTATCTGCCAGCATTGCTGGCGATTTGGTTCTTGCTGCAGCCTATGCCCATGAGCTGCCAAGCTATGGACTTGAAGTCGGCCTCACAAACTATGCGGCAGCTTACTGCACTGGCCTTCTCTTGGCTCGTCGTGTCTTGAAGAAGCTTGAGATGGATGATGAATATGAGGGCAATGTTGAGGCTACCGGTGAGGACTATTCTGTAGAGCCAGCTGAGAGCAGAAGGCCATTCCGTGCTCTTCTTGATGTTGGCTTGATTAGGACAACCACTGGAAACCGTGTGTTTGGTGCCTTGAAGGGTGCGTTGGATGGTGGGTTGGATATCCCACACAGTGAGAAGAGATTTGCTGGTTTCTCCAAGGATAGCAAGCAACTTGACCCTGAGGTGCATCGCAAGTATATCTATGGCGGTCATGTTGCTGCATACATGAGGACTTTGATGGAGGATGAGCCCGAGAAATATCAGACTCACTTCAGTGACTATATCAAGAAAGGAATTGAAGCAGATAACATTGAGGCCGTGTACAAGAAAGTTCAGGCTGCCATCCGTGCTGATCCTACAGCAAAGAAGATTGAAAAGCAACCTCCCAAAGAACACAAGAGGTACAACCTCAAGAAGCTTACATATGAGGAAAGGAAGAACAAGTTGATTGAGCGATTGAATGCCTTTAACTCAGCTGCTCAAGACCACGACGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

299

Amino Acids

34.19

Weight (kDa)

9.39

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 3 cut(s) 43, 287, 600
AclWI GGATC 1 cut(s) 740
AcuI CTGAAG 1 cut(s) 649
AdeI CACNNNGTG 1 cut(s) 524
AfaI GTAC 4 cut(s) 59, 131, 716, 797
AfiI CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 7 cut(s) 50, 266, 331, 487, 692, 767, 853
AhdI GACNNNNNGTC 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AleI CACNNNNGTG 1 cut(s) 666
AluBI AGCT 8 cut(s) 17, 247, 255, 293, 337, 404, 811, 869
AluI AGCT 8 cut(s) 17, 247, 255, 293, 337, 404, 811, 869
Alw21I GWGCWC 1 cut(s) 430
AlwI GGATC 1 cut(s) 740
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 5 cut(s) 3, 271, 304, 416, 708
ApeKI GCWGC 7 cut(s) 227, 230, 247, 290, 611, 731, 869
AsiGI ACCGGT 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 128, 161
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 7 cut(s) 214, 234, 242, 302, 598, 718, 856
BccI CCATC 4 cut(s) 337, 494, 625, 743
BceAI ACGGC 1 cut(s) 695
BfmI CTRYAG 3 cut(s) 228, 393, 750
BisI GCNGC 8 cut(s) 228, 231, 248, 288, 291, 612, 732, 870
BlsI GCNGC 8 cut(s) 229, 232, 249, 289, 292, 613, 733, 871
BmeRI GACNNNNNGTC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 644
BmiI GGNNCC 1 cut(s) 481
BmsI GCATC 1 cut(s) 589
BpuEI CTTGAG 3 cut(s) 359, 788, 858
BsaJI CCNNGG 2 cut(s) 27, 549
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 307, 466
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 2 cut(s) 204, 370
BseDI CCNNGG 2 cut(s) 27, 549
BseGI GGATG 4 cut(s) 352, 505, 643, 735
BseLI CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
BseMI GCAATG 2 cut(s) 204, 370
BseMII CTCAG 3 cut(s) 396, 564, 879
BseNI ACTGG 2 cut(s) 307, 466
BseXI GCAGC 7 cut(s) 214, 234, 242, 302, 598, 718, 856
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 5 cut(s) 5, 273, 306, 418, 710
BshNI GGYRCC 1 cut(s) 479
BshTI ACCGGT 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
BsmI GAATGC 1 cut(s) 859
BsnI GGCC 5 cut(s) 5, 273, 306, 418, 710
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 430, 645
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 1 cut(s) 745
BspACI CCGC 3 cut(s) 43, 287, 600
BspANI GGCC 5 cut(s) 5, 273, 306, 418, 710
BspCNI CTCAG 3 cut(s) 397, 565, 878
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 740
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 2 cut(s) 204, 370
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 2 cut(s) 307, 466
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 27, 549
BssMI GATC 1 cut(s) 745
BssT1I CCWWGG 2 cut(s) 27, 549
Bst4CI ACNGT 2 cut(s) 470, 524
Bst6I CTCTTC 2 cut(s) 435, 524
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 4 cut(s) 202, 211, 402, 560
BstDEI CTNAG 3 cut(s) 405, 573, 865
BstF5I GGATG 4 cut(s) 352, 505, 643, 735
BstKTI GATC 1 cut(s) 748
BstMBI GATC 1 cut(s) 745
BstMWI GCNNNNNNNGC 4 cut(s) 206, 210, 236, 740
BstSFI CTRYAG 3 cut(s) 228, 393, 750
BstV1I GCAGC 7 cut(s) 214, 234, 242, 302, 598, 718, 856
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 5 cut(s) 5, 273, 306, 418, 710
BtgZI GCGATG 1 cut(s) 566
BtsCI GGATG 4 cut(s) 352, 505, 643, 735
BtsIMutI CAGTG 4 cut(s) 300, 459, 529, 673
Cac8I GCNNGC 4 cut(s) 202, 211, 402, 560
Cfr10I RCCGGY 1 cut(s) 377
Csp6I GTAC 4 cut(s) 58, 130, 715, 796
CspAI ACCGGT 1 cut(s) 377
CviAII CATG 3 cut(s) 242, 605, 619
CviQI GTAC 4 cut(s) 58, 130, 715, 796
DdeI CTNAG 3 cut(s) 405, 573, 865
DpnI GATC 1 cut(s) 747
DpnII GATC 1 cut(s) 745
DraIII CACNNNGTG 1 cut(s) 524
DriI GACNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 435, 524
Eam1105I GACNNNNNGTC 1 cut(s) 266
EarI CTCTTC 2 cut(s) 435, 524
Eco130I CCWWGG 2 cut(s) 27, 549
Eco24I GRGCYC 1 cut(s) 645
Eco32I GATATC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 649
Eco81I CCTNAGG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 644
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 27, 549
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 27, 549
FaeI CATG 3 cut(s) 245, 608, 622
FatI CATG 3 cut(s) 241, 604, 618
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 8 cut(s) 228, 231, 248, 288, 291, 612, 732, 870
FokI GGATG 4 cut(s) 359, 512, 650, 722
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 8 cut(s) 228, 231, 248, 288, 291, 612, 732, 870
GluI GCNGC 8 cut(s) 228, 231, 248, 288, 291, 612, 732, 870
HaeIII GGCC 5 cut(s) 5, 273, 306, 418, 710
HapII CCGG 1 cut(s) 378
Hin1II CATG 3 cut(s) 245, 608, 622
HindIII AAGCTT 2 cut(s) 335, 809
HinfI GANTC 1 cut(s) 658
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 715
Hpy188I TCNGA 1 cut(s) 657
Hpy188III TCNNGA 5 cut(s) 328, 434, 679, 805, 875
Hpy8I GTNNAC 1 cut(s) 715
Hpy99I CGWCG 2 cut(s) 324, 887
HpyAV CCTTC 5 cut(s) 16, 60, 317, 408, 481
HpyCH4III ACNGT 2 cut(s) 470, 524
HpyCH4V TGCA 4 cut(s) 230, 300, 580, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 210, 236, 740
HpyF3I CTNAG 3 cut(s) 405, 573, 865
Hsp92II CATG 3 cut(s) 245, 608, 622
Kzo9I GATC 1 cut(s) 745
LguI GCTCTTC 1 cut(s) 435
Lsp1109I GCAGC 7 cut(s) 214, 234, 242, 302, 598, 718, 856
LweI GCATC 1 cut(s) 589
MaeIII GTNAC 1 cut(s) 668
MalI GATC 1 cut(s) 747
MboI GATC 1 cut(s) 745
MboII GAAGA 5 cut(s) 343, 422, 541, 772, 841
MhlI GDGCHC 2 cut(s) 430, 645
MluCI AATT 3 cut(s) 99, 189, 687
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 2 cut(s) 477, 489
MseI TTAA 2 cut(s) 111, 861
MslI CAYNNNNRTG 2 cut(s) 666, 885
MspA1I CMGCKG 2 cut(s) 404, 869
MspI CCGG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 859
MwoI GCNNNNNNNGC 4 cut(s) 206, 210, 236, 740
NdeI CATATG 1 cut(s) 817
NdeII GATC 1 cut(s) 745
NlaIII CATG 3 cut(s) 245, 608, 622
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 668
OliI CACNNNNGTG 1 cut(s) 666
PciSI GCTCTTC 1 cut(s) 435
PctI GAATGC 1 cut(s) 859
PflMI CCANNNNNTGG 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 377
PkrI GCNGC 8 cut(s) 229, 232, 249, 289, 292, 613, 733, 871
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 2 cut(s) 404, 869
RsaI GTAC 4 cut(s) 59, 131, 716, 797
RsaNI GTAC 4 cut(s) 58, 130, 715, 796
RseI CAYNNNNRTG 2 cut(s) 666, 885
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 111, 861
SatI GCNGC 8 cut(s) 228, 231, 248, 288, 291, 612, 732, 870
Sau3AI GATC 1 cut(s) 745
SchI GAGTC 1 cut(s) 652
SduI GDGCHC 2 cut(s) 430, 645
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 3 cut(s) 228, 393, 750
SmiMI CAYNNNNRTG 2 cut(s) 666, 885
SmlI CTYRAG 3 cut(s) 338, 803, 873
SmoI CTYRAG 3 cut(s) 338, 803, 873
Sse9I AATT 3 cut(s) 99, 189, 687
SsiI CCGC 3 cut(s) 43, 287, 600
StyI CCWWGG 2 cut(s) 27, 549
TaaI ACNGT 2 cut(s) 470, 524
TasI AATT 3 cut(s) 99, 189, 687
TatI WGTACW 3 cut(s) 57, 129, 714
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 111, 861
Tru9I TTAA 2 cut(s) 111, 861
TscAI CASTG 4 cut(s) 307, 466, 529, 673
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 7 cut(s) 227, 230, 247, 290, 611, 731, 869
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 2 cut(s) 413, 728
TspRI CASTG 4 cut(s) 307, 466, 529, 673
Van91I CCANNNNNTGG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.