Rmu_sc0002784.1_g000056

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002784.1
OG0001819
Physical Location & Seq
Forward (+)
233866 .. 237160
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002784.1_g000056.1.cds

Sequence Viewer

Length: 501 bp
atggatcaaaatttatcaaattcatcttcagatgctgcaaatgaggaattttgggatcttgctaattcatcatcagacgaagaattgatgaatctggagattgctgctctacaagagaagggaagaagaagacgctgtggctcaattcctggtcgcatatataaagatggagctttggacggtggtttggatattccacacagtgataagaggtttgctggtttctccaaggacaacaagcagcttgatgctgaggtacatcgcaagtatatctatggtggccatgttgctgcatacatgaggactttgatggaggatgaaccagaaaagtatcagagccatttcagtgaatacattaagaaaggaatagtagcagataacattgaagagatttacaagaaagtgcatgcagccatcagggccgaccctgcaatgaagaaatctgaaaaccttcaacactcggaacacaagagcataatctcaattgtatctctcaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

5.8

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 63
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 3 cut(s) 10, 19, 47
AcuI CTGAAG 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 2 cut(s) 386, 455
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 173, 244
AluI AGCT 2 cut(s) 173, 244
AlwI GGATC 2 cut(s) 12, 63
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 2 cut(s) 280, 420
ApeKI GCWGC 5 cut(s) 35, 104, 241, 290, 410
ApoI RAATTY 3 cut(s) 10, 19, 47
Asp700I GAANNNNTTC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 22, 91, 253, 277, 422
BccI CCATC 3 cut(s) 161, 304, 422
BciT130I CCWGG 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 419
BisI GCNGC 5 cut(s) 36, 105, 242, 291, 411
BlsI GCNGC 5 cut(s) 37, 106, 243, 292, 412
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 22, 238
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 22, 91, 253, 277, 422
BshFI GGCC 2 cut(s) 282, 422
BsnI GGCC 2 cut(s) 282, 422
Bsp143I GATC 2 cut(s) 4, 55
BspANI GGCC 2 cut(s) 282, 422
BspCNI CTCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 12, 63
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 4, 55
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 182, 203
Bst6I CTCTTC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 7, 58
BstMBI GATC 2 cut(s) 4, 55
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 5 cut(s) 22, 91, 253, 277, 422
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 282, 422
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 208, 352
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 420
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 257
CviAII CATG 3 cut(s) 284, 298, 407
CviJI RGCY 7 cut(s) 141, 173, 244, 282, 339, 413, 422
CviKI_1 RGCY 7 cut(s) 141, 173, 244, 282, 339, 413, 422
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 6, 57
DpnII GATC 2 cut(s) 4, 55
DraIII CACNNNGTG 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 287, 301, 410
FatI CATG 3 cut(s) 283, 297, 406
Fnu4HI GCNGC 5 cut(s) 36, 105, 242, 291, 411
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 36, 105, 242, 291, 411
GluI GCNGC 5 cut(s) 36, 105, 242, 291, 411
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 2 cut(s) 282, 422
HgaI GACGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 287, 301, 410
HinfI GANTC 1 cut(s) 91
Hpy188I TCNGA 5 cut(s) 31, 76, 336, 445, 463
Hpy188III TCNNGA 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 112, 461
HpyCH4III ACNGT 2 cut(s) 182, 203
HpyCH4V TGCA 5 cut(s) 38, 293, 406, 410, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 3 cut(s) 287, 301, 410
Kzo9I GATC 2 cut(s) 4, 55
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 7 cut(s) 80, 135, 162, 204, 336, 403, 441
Lsp1109I GCAGC 5 cut(s) 22, 91, 253, 277, 422
LweI GCATC 2 cut(s) 22, 238
MalI GATC 2 cut(s) 6, 57
MboI GATC 2 cut(s) 4, 55
MboII GAAGA 7 cut(s) 18, 92, 135, 138, 141, 398, 448
MfeI CAATTG 2 cut(s) 483, 496
MflI RGATCY 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 8 cut(s) 10, 19, 47, 64, 83, 144, 483, 496
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 5 cut(s) 37, 204, 247, 294, 307
Mox20I TGGCCA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 1 cut(s) 282
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 2 cut(s) 483, 496
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NdeII GATC 2 cut(s) 4, 55
NlaIII CATG 3 cut(s) 287, 301, 410
NspI RCATGY 1 cut(s) 410
PaeI GCATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 5 cut(s) 37, 106, 243, 292, 412
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 5 cut(s) 36, 105, 242, 291, 411
Sau3AI GATC 2 cut(s) 4, 55
Sau96I GGNCC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 175, 215, 246, 258, 453
SfaNI GCATC 2 cut(s) 22, 238
SmiMI CAYNNNNRTG 1 cut(s) 345
SphI GCATGC 1 cut(s) 410
Sse9I AATT 8 cut(s) 10, 19, 47, 64, 83, 144, 483, 496
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 182, 203
TasI AATT 8 cut(s) 10, 19, 47, 64, 83, 144, 483, 496
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 2 cut(s) 208, 352
TseI GCWGC 5 cut(s) 35, 104, 241, 290, 410
TspDTI ATGAA 5 cut(s) 12, 57, 104, 333, 449
TspRI CASTG 2 cut(s) 208, 352
XapI RAATTY 3 cut(s) 10, 19, 47
XceI RCATGY 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.