Rroxscaffold_3G00223930

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001819
Physical Location & Seq
Forward (+)
7105011 .. 7110880
5870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223930.1

Sequence Viewer

Length: 627 bp
ATGGGTCTCGACCTTCGAGTGCTTTTGCAAAAACACCAAGTCTACAAATTCCTAAAATATGGCAATCTCCGGAAATTTTTCGACTTCTCCGACATTTCCTTGCCTCTATGCTCTTCGTCTCACCAATTTGAAGGCGTCGGCGTTGAGGAGCTGGAGGTTGAGCTTGAAGAAGGTGGGATCGATGGAGATAAGGTCGAAGCTAGTTATCTCATCCAGTTTCTCGCATTACTCAATGGGATTGATTTCATTTACAGCATTAAACCTTCTTCTGCAAAAGATTCAGATAGTCTGTGTGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATATTGCTGCATACATGAGGACTTTGATGGAGGATGAACCAGAAAAGTATCAGAGCCATTTCAGTGAATACATTAAGAAAGGAATAGTAGCAGATAACATTGAAGAGATTTACAAGAAAGTGCATGCAGCCATCAGGGCCGACTCTGCAATGAAGAAATCTGAAAAGCCTCAACACTCGGAACACAAGAGCATAATCTCAATTGTATCTCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

208

Amino Acids

23.46

Weight (kDa)

5.72

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18_c PF14204 170 - 200 3.8e-07 Ribosomal L18 C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 69
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 2 cut(s) 47, 74
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 1 cut(s) 384
AgsI TTSAA 3 cut(s) 131, 167, 512
AluBI AGCT 5 cut(s) 151, 163, 200, 299, 370
AluI AGCT 5 cut(s) 151, 163, 200, 299, 370
Alw26I GTCTC 2 cut(s) 11, 123
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 2 cut(s) 406, 546
ApeKI GCWGC 3 cut(s) 367, 416, 536
ApoI RAATTY 2 cut(s) 47, 74
Asp700I GAANNNNTTC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 546
AsuHPI GGTGA 1 cut(s) 113
BalI TGGCCA 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 379, 403, 548
BccI CCATC 3 cut(s) 176, 430, 548
BcoDI GTCTC 2 cut(s) 11, 123
BfaI CTAG 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 3 cut(s) 368, 417, 537
BlsI GCNGC 3 cut(s) 369, 418, 538
BmgT120I GGNCC 1 cut(s) 546
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 2 cut(s) 210, 448
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 379, 403, 548
BshFI GGCC 2 cut(s) 408, 548
BshVI ATCGAT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 11, 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 2 cut(s) 408, 548
Bso31I GGTCTC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 177
BspANI GGCC 2 cut(s) 408, 548
BspCNI CTCAG 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 180
BspEI TCCGGA 1 cut(s) 69
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 308, 329
Bst6I CTCTTC 2 cut(s) 118, 507
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 210, 448
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 2 cut(s) 11, 123
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 545, 554
BstNSI RCATGY 1 cut(s) 536
BstV1I GCAGC 3 cut(s) 379, 403, 548
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 2 cut(s) 408, 548
BsuTUI ATCGAT 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 210, 448
BtsIMutI CAGTG 2 cut(s) 334, 478
Cac8I GCNNGC 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 383
CviAII CATG 2 cut(s) 424, 533
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraIII CACNNNGTG 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 118, 507
EarI CTCTTC 2 cut(s) 118, 507
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 427, 536
FaiI YATR 9 cut(s) 60, 109, 396, 402, 411, 421, 425, 534, 602
FatI CATG 2 cut(s) 423, 532
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 368, 417, 537
FokI GGATG 2 cut(s) 197, 455
Fsp4HI GCNGC 3 cut(s) 368, 417, 537
FspBI CTAG 1 cut(s) 201
GluI GCNGC 3 cut(s) 368, 417, 537
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 2 cut(s) 408, 548
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 427, 536
HinfI GANTC 2 cut(s) 278, 551
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 5 cut(s) 91, 283, 462, 571, 589
Hpy188III TCNNGA 2 cut(s) 8, 70
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 23, 125, 164, 273
HpyCH4III ACNGT 2 cut(s) 308, 329
HpyCH4V TGCA 6 cut(s) 28, 272, 419, 532, 536, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 554
HpyF3I CTNAG 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 427, 536
Kpn2I TCCGGA 1 cut(s) 69
Kzo9I GATC 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 2 cut(s) 148, 296
LpnPI CCDG 6 cut(s) 83, 137, 227, 330, 462, 529
Lsp1109I GCAGC 3 cut(s) 379, 403, 548
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 201
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 105, 179, 258, 524, 574
MfeI CAATTG 2 cut(s) 609, 622
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 5 cut(s) 47, 74, 125, 609, 622
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 8 cut(s) 114, 139, 148, 330, 373, 420, 433, 588
Mox20I TGGCCA 1 cut(s) 408
MroI TCCGGA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 77
MscI TGGCCA 1 cut(s) 408
MseI TTAA 2 cut(s) 258, 483
MslI CAYNNNNRTG 1 cut(s) 471
Msp20I TGGCCA 1 cut(s) 408
MspI CCGG 1 cut(s) 70
MunI CAATTG 2 cut(s) 609, 622
MwoI GCNNNNNNNGC 2 cut(s) 545, 554
NdeII GATC 1 cut(s) 177
NlaIII CATG 2 cut(s) 427, 536
NspI RCATGY 1 cut(s) 536
PaeI GCATGC 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 369, 418, 538
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
PspPI GGNCC 1 cut(s) 546
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 258, 483
SatI GCNGC 3 cut(s) 368, 417, 537
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 1 cut(s) 545
SfaNI GCATC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 471
SphI GCATGC 1 cut(s) 536
Sse9I AATT 5 cut(s) 47, 74, 125, 609, 622
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 308, 329
TaqI TCGA 5 cut(s) 9, 16, 81, 180, 195
TasI AATT 5 cut(s) 47, 74, 125, 609, 622
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 258, 483
Tru9I TTAA 2 cut(s) 258, 483
TscAI CASTG 2 cut(s) 334, 478
TseI GCWGC 3 cut(s) 367, 416, 536
TspDTI ATGAA 3 cut(s) 235, 459, 575
TspRI CASTG 2 cut(s) 334, 478
XapI RAATTY 2 cut(s) 47, 74
XceI RCATGY 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.