RchiOBHm_Chr5g0042531

60S ribosomal Protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
37342444 .. 37343006
563 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32092

Sequence Viewer

Length: 390 bp
ATGGAGTTTGCACCTATTTGTTTTAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCACAAGTATATCTACGGTGGCCATGTTGCTGCATGCATGAGGACTGTGATGGAGGATGAACCAGAAAAGTATCAGAGCCATTTAAGTGAATACATTAAGAAAGGAATAGTAGCAGATAACATTGAAGAGATTTACAAGAAAGTGCATGCAGCCATCAAGGTCGACCCTGCAATGAAGAAATCTGAAAAGCCTCAACATTCGGAACACAAGAGCATAATCTCAATTGCATCTCAATTGATTTACAAGATAAAAAAAATAAATAAAAAAAATAAAAAAACAAAAAAAAAACAACATAAATATAATTTTATATATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

15.1

Weight (kDa)

9.55

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 94
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 55, 104, 224
BalI TGGCCA 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 67, 91, 236
BccI CCATC 2 cut(s) 118, 236
BisI GCNGC 3 cut(s) 56, 105, 225
BlsI GCNGC 3 cut(s) 57, 106, 226
BmsI GCATC 2 cut(s) 52, 311
Bpu10I CCTNAGC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 67, 91, 236
BshFI GGCC 1 cut(s) 96
BsnI GGCC 1 cut(s) 96
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 92, 121
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 109, 222
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 136
BstNSI RCATGY 2 cut(s) 111, 224
BstV1I GCAGC 3 cut(s) 67, 91, 236
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 109, 222
Csp6I GTAC 1 cut(s) 71
CviAII CATG 4 cut(s) 98, 108, 112, 221
CviJI RGCY 5 cut(s) 58, 96, 153, 227, 265
CviKI_1 RGCY 5 cut(s) 58, 96, 153, 227, 265
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 4 cut(s) 101, 111, 115, 224
FatI CATG 4 cut(s) 97, 107, 111, 220
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 56, 105, 225
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 56, 105, 225
GluI GCNGC 3 cut(s) 56, 105, 225
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 4 cut(s) 101, 111, 115, 224
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 150, 259, 277
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 92, 121
HpyCH4V TGCA 7 cut(s) 11, 107, 111, 220, 224, 245, 302
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 4 cut(s) 101, 111, 115, 224
LpnPI CCDG 3 cut(s) 18, 150, 255
Lsp1109I GCAGC 3 cut(s) 67, 91, 236
LweI GCATC 2 cut(s) 52, 311
MboII GAAGA 2 cut(s) 212, 262
MfeI CAATTG 2 cut(s) 297, 308
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 3 cut(s) 297, 308, 376
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 4 cut(s) 61, 108, 121, 276
Mox20I TGGCCA 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 113
MscI TGGCCA 1 cut(s) 96
MseI TTAA 3 cut(s) 158, 171, 388
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 96
MunI CAATTG 2 cut(s) 297, 308
NlaIII CATG 4 cut(s) 101, 111, 115, 224
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 2 cut(s) 111, 224
PaeI GCATGC 2 cut(s) 111, 224
PkrI GCNGC 3 cut(s) 57, 106, 226
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 159
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 158, 171, 388
SatI GCNGC 3 cut(s) 56, 105, 225
SetI ASST 5 cut(s) 16, 29, 60, 72, 237
SfaNI GCATC 2 cut(s) 52, 311
SmiMI CAYNNNNRTG 1 cut(s) 159
SphI GCATGC 2 cut(s) 111, 224
Sse9I AATT 3 cut(s) 297, 308, 376
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 92, 121
TaqI TCGA 1 cut(s) 237
TasI AATT 3 cut(s) 297, 308, 376
Tru1I TTAA 3 cut(s) 158, 171, 388
Tru9I TTAA 3 cut(s) 158, 171, 388
TseI GCWGC 3 cut(s) 55, 104, 224
TspDTI ATGAA 2 cut(s) 147, 263
XceI RCATGY 2 cut(s) 111, 224
XmiI GTMKAC 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.