pycom15g13230

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001819
Physical Location & Seq
Reverse (-)
9057390 .. 9064162
6773 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13230.2

Sequence Viewer

Length: 567 bp
ATGGATGACGAATATGAGGGCAATGTTGAGGCTACTGGTGAGGACTACTCTGTGGAGCCAGCTGAGAGCAGAAGGCCATTCCGTGCCCTTCTTGATGTTGGCCTGATCAGGACCACCACAGGAAATCGTGTATTCGGTGCCTTGAAGGGTGCTTTGGATGGGGGTTTAGATATCCCTCACAGTGAGAAGAGGTTTGCCGGTTTCTCCAAGGATAGCAAGCAACTTGACCCAGAGGTTCATCGGAAGTACATCTATGGTGGCCATGTTGCTGCCTACATGAGGACCTTGGCGGAGGATGAGCCAGAGAAGTATCAAAGTCACTTCAGTGAATATATTAAGAAAGGAATTGAAGTGGATAACATCGAGGAGTTGTACAAGAAAGTTCATGCTGCCATCCGTGCTGATCCTACAATTAAGAAGACTGAAAAGCCTTCTCCTCAAGAACACAAGAGATACAACCTCAAAAAGCTCACCTTTGATGAGAGGAAGAAGAAGTTGGTTGAGAGATTGAAGGCCTTCAATGACGCTGGCAACGATGACGACAGTGATGATGATGATGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

189

Amino Acids

21.53

Weight (kDa)

5.35

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 3 cut(s) 248, 374, 563
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 4 cut(s) 145, 350, 511, 520
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 479, 511
AleI CACNNNNGTG 1 cut(s) 324
AluBI AGCT 2 cut(s) 62, 469
AluI AGCT 2 cut(s) 62, 469
AlwI GGATC 1 cut(s) 398
AoxI GGCC 4 cut(s) 74, 100, 259, 513
ApeKI GCWGC 2 cut(s) 269, 389
Asp700I GAANNNNTTC 1 cut(s) 515
AspS9I GGNCC 2 cut(s) 111, 282
AsuHPI GGTGA 2 cut(s) 50, 463
AvaII GGWCC 2 cut(s) 111, 282
BaeGI GKGCMC 1 cut(s) 88
BalI TGGCCA 1 cut(s) 261
BanI GGYRCC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 256, 376
BccI CCATC 2 cut(s) 152, 401
BclI TGATCA 1 cut(s) 105
BisI GCNGC 2 cut(s) 270, 390
BlsI GCNGC 2 cut(s) 271, 391
BmcAI AGTACT 1 cut(s) 563
Bme18I GGWCC 2 cut(s) 111, 282
BmgT120I GGNCC 2 cut(s) 111, 282
BmiI GGNNCC 2 cut(s) 57, 139
BpiI GAAGAC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 207, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 207, 285
BseGI GGATG 4 cut(s) 10, 163, 301, 393
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 2 cut(s) 380, 426
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 256, 376
BshFI GGCC 4 cut(s) 76, 102, 261, 515
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 279
BsnI GGCC 4 cut(s) 76, 102, 261, 515
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 105, 403
BspACI CCGC 1 cut(s) 290
BspANI GGCC 4 cut(s) 76, 102, 261, 515
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 57, 139
BspPI GGATC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 207, 285
BssMI GATC 2 cut(s) 105, 403
BssT1I CCWWGG 2 cut(s) 207, 285
Bst4CI ACNGT 2 cut(s) 182, 545
Bst6I CTCTTC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 60, 218, 529
BstDEI CTNAG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 277
BstF5I GGATG 4 cut(s) 10, 163, 301, 393
BstKTI GATC 2 cut(s) 108, 406
BstMBI GATC 2 cut(s) 105, 403
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 256, 376
BstV2I GAAGAC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 76, 102, 261, 515
BtsCI GGATG 4 cut(s) 10, 163, 301, 393
BtsIMutI CAGTG 3 cut(s) 187, 331, 550
Cac8I GCNNGC 3 cut(s) 60, 218, 529
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 111, 282
CseI GACGC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 247, 373, 562
CviAII CATG 3 cut(s) 263, 277, 386
CviQI GTAC 3 cut(s) 247, 373, 562
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 107, 405
DpnII GATC 2 cut(s) 105, 403
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 207, 285
Eco147I AGGCCT 1 cut(s) 515
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 111, 282
Eco57I CTGAAG 1 cut(s) 307
EcoNI CCTNNNNNAGG 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 282
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 207, 285
ErhI CCWWGG 2 cut(s) 207, 285
FaeI CATG 3 cut(s) 266, 280, 389
FaiI YATR 6 cut(s) 15, 255, 264, 278, 333, 387
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FatI CATG 3 cut(s) 262, 276, 385
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 270, 390
FokI GGATG 4 cut(s) 17, 170, 308, 380
Fsp4HI GCNGC 2 cut(s) 270, 390
GluI GCNGC 2 cut(s) 270, 390
HaeIII GGCC 4 cut(s) 76, 102, 261, 515
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 266, 280, 389
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 50, 463
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 3 cut(s) 92, 109, 440
HpyAV CCTTC 6 cut(s) 66, 98, 139, 441, 505, 526
HpyCH4III ACNGT 2 cut(s) 182, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 3 cut(s) 266, 280, 389
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 403
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 9 cut(s) 21, 72, 94, 105, 116, 211, 243, 315, 513
Lsp1109I GCAGC 2 cut(s) 256, 376
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 107, 405
MboI GATC 2 cut(s) 105, 403
MboII GAAGA 4 cut(s) 199, 430, 499, 502
MhlI GDGCHC 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 2 cut(s) 345, 411
MluNI TGGCCA 1 cut(s) 261
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 515
MscI TGGCCA 1 cut(s) 261
MseI TTAA 2 cut(s) 336, 414
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 2 cut(s) 105, 403
NlaIII CATG 3 cut(s) 266, 280, 389
NlaIV GGNNCC 2 cut(s) 57, 139
NmuCI GTSAC 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 324
PceI AGGCCT 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 515
PkrI GCNGC 2 cut(s) 271, 391
PpuMI RGGWCCY 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 57, 139
PspPI GGNCC 2 cut(s) 111, 282
PspPPI RGGWCCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 248, 374, 563
RsaNI GTAC 3 cut(s) 247, 373, 562
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 2 cut(s) 336, 414
SatI GCNGC 2 cut(s) 270, 390
Sau3AI GATC 2 cut(s) 105, 403
Sau96I GGNCC 2 cut(s) 111, 282
ScaI AGTACT 1 cut(s) 563
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 64, 194, 237, 287, 462, 471, 476
SinI GGWCC 2 cut(s) 111, 282
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 2 cut(s) 345, 411
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 1 cut(s) 290
StuI AGGCCT 1 cut(s) 515
StyI CCWWGG 2 cut(s) 207, 285
TaaI ACNGT 2 cut(s) 182, 545
TaqI TCGA 1 cut(s) 363
TasI AATT 2 cut(s) 345, 411
TatI WGTACW 3 cut(s) 246, 372, 561
Tru1I TTAA 2 cut(s) 336, 414
Tru9I TTAA 2 cut(s) 336, 414
TscAI CASTG 3 cut(s) 187, 331, 550
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 269, 389
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 227, 374
TspGWI ACGGA 2 cut(s) 71, 386
TspRI CASTG 3 cut(s) 187, 331, 550
VpaK11BI GGWCC 2 cut(s) 111, 282
XagI CCTNNNNNAGG 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 515
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.