Prupe.1G039100_v2.0.a1

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001819
Physical Location & Seq
Reverse (-)
2757637 .. 2759656
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G039100.1

Sequence Viewer

Length: 897 bp
ATGGCCTTCGTGAAATCTCTGAAATCCAGGGCCTACTTCAAGCGGTTCCAGGTCAAGTACAAGAGAAGAAGACAGGGAAAGACCGATTACAGAGCCAGAATCCGCCTCATCAACCAAGACAAGAACAAATACAACACACCCAAGTACCGGTTCGTCGTCCGATTCACCAACAAGGACATCGTCGCCCAGATCATCTCCGCCAGCATCGCCGGCGATCTGGTTCTCGCCTCCGCCTACGCCCACGAGCTTCCTCGCTATGGGCTCAAGGTGGGCCTCACCAACTACGCCGCAGCCTACTGCACCGGTCTTCTCTTGGCTCGCCGAGTCCTGCACAAGCTCGAAATGGCCGACGAGTATGAGGGCAACGTCGAGGCCACCGGCGAGGACTATTCTGTGGAGCCATCGGAGAGCCGGAGGCCATTTAGGGCTCTGCTCGATGTGGGTTTGATCAGAACCACAACTGGGAACCGTGTGTTTGGTGCTTTGAAGGGAGCTCTGGATGGTGGGCTTGATGTGCCTCACAGCGAAAAGAGGTTTGCTGGGTTTTCTAAGGACAACAAGCAGCTTGATTCTGATGTCCACAGGAAGTACATCTATGGCGGGCATGTTGCTGCTTACATGGGGATTTTGAGTGAGGATGAGCCTGAGAAATTTCAGACCCATTTCAGTGCGTACATCAAGAAGGGCGTTGAGGCTGAAGGGATTGAGGAGATGTACAAGAAGGTTCATGCCGCCATTCGTGCCGATCCAACCGTGAAGCTGACTGAGAAGAAGGAGGTGAAGGAGCACAAGAGATTCAATCTGAAGAAGCTTACTTATGATGAGAGGAAGGAGAAGTTGATTGAGAGGTTGAATGCTTTCAACTCAGCTGCTGGGGATGAAGATGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

299

Amino Acids

34.06

Weight (kDa)

9.43

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 43, 103, 198, 231, 288, 600, 732
AclWI GGATC 1 cut(s) 740
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 2 cut(s) 717, 824
AfaI GTAC 5 cut(s) 59, 146, 590, 674, 716
AfiI CCNNNNNNNGG 3 cut(s) 147, 257, 462
AgeI ACCGGT 2 cut(s) 147, 302
AgsI TTSAA 5 cut(s) 40, 487, 799, 853, 862
AjnI CCWGG 2 cut(s) 26, 48
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 7 cut(s) 247, 337, 494, 565, 760, 811, 869
AluI AGCT 7 cut(s) 247, 337, 494, 565, 760, 811, 869
Alw21I GWGCWC 2 cut(s) 496, 789
AlwI GGATC 1 cut(s) 740
AlwNI CAGNNNCTG 1 cut(s) 872
AoxI GGCC 6 cut(s) 3, 30, 271, 345, 372, 416
ApeKI GCWGC 4 cut(s) 290, 562, 611, 869
ApoI RAATTY 1 cut(s) 650
AsiGI ACCGGT 2 cut(s) 147, 302
Asp700I GAANNNNTTC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 30, 271
AsuHPI GGTGA 3 cut(s) 157, 268, 790
BaeI ACNNNNGTAYC 2 cut(s) 128, 161
BanII GRGCYC 3 cut(s) 264, 430, 496
BauI CACGAG 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 76, 299
Bbv12I GWGCWC 2 cut(s) 496, 789
BbvI GCAGC 4 cut(s) 302, 574, 598, 856
BccI CCATC 2 cut(s) 409, 494
BciT130I CCWGG 2 cut(s) 28, 50
BclI TGATCA 1 cut(s) 447
BisI GCNGC 6 cut(s) 288, 291, 563, 612, 732, 870
BlsI GCNGC 6 cut(s) 289, 292, 564, 613, 733, 871
Bme1390I CCNGG 2 cut(s) 28, 50
BmgT120I GGNCC 2 cut(s) 30, 271
BmiI GGNNCC 3 cut(s) 47, 399, 467
BmrFI CCNGG 2 cut(s) 28, 50
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 471
BpiI GAAGAC 2 cut(s) 76, 299
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 2 cut(s) 147, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 257, 462
Bse118I RCCGGY 4 cut(s) 147, 209, 302, 377
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 28, 50
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 505, 643, 883
BseLI CCNNNNNNNGG 3 cut(s) 147, 257, 462
BseMII CTCAG 3 cut(s) 636, 756, 879
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 4 cut(s) 302, 574, 598, 856
BseYI CCCAGC 2 cut(s) 539, 872
BsgI GTGCAG 2 cut(s) 283, 314
BshFI GGCC 6 cut(s) 5, 32, 273, 347, 374, 418
BshTI ACCGGT 2 cut(s) 147, 302
BsiHKAI GWGCWC 2 cut(s) 496, 789
BsiSI CCGG 5 cut(s) 148, 210, 303, 378, 412
BslI CCNNNNNNNGG 3 cut(s) 147, 257, 462
BsmI GAATGC 1 cut(s) 859
BsnI GGCC 6 cut(s) 5, 32, 273, 347, 374, 418
Bsp1286I GDGCHC 4 cut(s) 264, 430, 496, 789
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 4 cut(s) 189, 214, 447, 745
BspACI CCGC 7 cut(s) 43, 103, 198, 231, 288, 600, 732
BspANI GGCC 6 cut(s) 5, 32, 273, 347, 374, 418
BspCNI CTCAG 3 cut(s) 637, 757, 878
BspLI GGNNCC 3 cut(s) 47, 399, 467
BspPI GGATC 1 cut(s) 740
BsrFI RCCGGY 4 cut(s) 147, 209, 302, 377
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 4 cut(s) 147, 209, 302, 377
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 189, 214, 447, 745
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 28, 50
Bst4CI ACNGT 2 cut(s) 470, 754
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 4 cut(s) 202, 211, 319, 602
BstDEI CTNAG 4 cut(s) 549, 645, 765, 865
BstF5I GGATG 3 cut(s) 505, 643, 883
BstKTI GATC 4 cut(s) 192, 217, 450, 748
BstMBI GATC 4 cut(s) 189, 214, 447, 745
BstMWI GCNNNNNNNGC 4 cut(s) 206, 210, 514, 740
BstNI CCWGG 2 cut(s) 28, 50
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 2 cut(s) 26, 48
BstV1I GCAGC 4 cut(s) 302, 574, 598, 856
BstV2I GAAGAC 2 cut(s) 76, 299
BsuRI GGCC 6 cut(s) 5, 32, 273, 347, 374, 418
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 3 cut(s) 505, 643, 883
BtsIMutI CAGTG 1 cut(s) 673
Cac8I GCNNGC 4 cut(s) 202, 211, 319, 602
CaiI CAGNNNCTG 1 cut(s) 872
Cfr10I RCCGGY 4 cut(s) 147, 209, 302, 377
Cfr13I GGNCC 2 cut(s) 30, 271
Csp6I GTAC 5 cut(s) 58, 145, 589, 673, 715
CspAI ACCGGT 2 cut(s) 147, 302
CviAII CATG 3 cut(s) 605, 619, 728
CviQI GTAC 5 cut(s) 58, 145, 589, 673, 715
DdeI CTNAG 4 cut(s) 549, 645, 765, 865
DpnI GATC 4 cut(s) 191, 216, 449, 747
DpnII GATC 4 cut(s) 189, 214, 447, 745
EaeI YGGCCR 1 cut(s) 345
EciI GGCGGA 3 cut(s) 92, 187, 220
Ecl136II GAGCTC 1 cut(s) 494
Eco24I GRGCYC 3 cut(s) 264, 430, 496
Eco53kI GAGCTC 1 cut(s) 494
Eco57I CTGAAG 2 cut(s) 717, 824
EcoICRI GAGCTC 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 26, 48
EcoT38I GRGCYC 3 cut(s) 264, 430, 496
FaeI CATG 3 cut(s) 608, 622, 731
FaiI YATR 7 cut(s) 258, 357, 597, 606, 620, 729, 819
FatI CATG 3 cut(s) 604, 618, 727
FauI CCCGC 1 cut(s) 593
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 6 cut(s) 288, 291, 563, 612, 732, 870
FokI GGATG 3 cut(s) 512, 650, 890
FriOI GRGCYC 3 cut(s) 264, 430, 496
Fsp4HI GCNGC 6 cut(s) 288, 291, 563, 612, 732, 870
GluI GCNGC 6 cut(s) 288, 291, 563, 612, 732, 870
GsaI CCCAGC 2 cut(s) 543, 876
HaeIII GGCC 6 cut(s) 5, 32, 273, 347, 374, 418
HapII CCGG 5 cut(s) 148, 210, 303, 378, 412
Hin1II CATG 3 cut(s) 608, 622, 731
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 5 cut(s) 99, 162, 324, 569, 795
HpaII CCGG 5 cut(s) 148, 210, 303, 378, 412
HphI GGTGA 3 cut(s) 157, 268, 790
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 7 cut(s) 21, 161, 406, 452, 574, 657, 804
Hpy188III TCNNGA 3 cut(s) 10, 497, 679
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 4 cut(s) 158, 185, 353, 371
HpyAV CCTTC 8 cut(s) 16, 481, 676, 692, 715, 766, 775, 823
HpyCH4III ACNGT 2 cut(s) 470, 754
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 300, 331
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 210, 514, 740
HpyF3I CTNAG 4 cut(s) 549, 645, 765, 865
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 3 cut(s) 608, 622, 731
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 4 cut(s) 189, 214, 447, 745
LmnI GCTCC 3 cut(s) 397, 491, 784
Lsp1109I GCAGC 4 cut(s) 302, 574, 598, 856
LweI GCATC 1 cut(s) 213
MaeII ACGT 1 cut(s) 366
MalI GATC 4 cut(s) 191, 216, 449, 747
MboI GATC 4 cut(s) 189, 214, 447, 745
MboII GAAGA 6 cut(s) 78, 81, 299, 781, 817, 893
MhlI GDGCHC 4 cut(s) 264, 430, 496, 789
MluCI AATT 1 cut(s) 650
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 773
MreI CGCCGGCG 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 857
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 5 cut(s) 148, 210, 303, 378, 412
MspR9I CCNGG 2 cut(s) 28, 50
Mva1269I GAATGC 1 cut(s) 859
MvaI CCWGG 2 cut(s) 28, 50
MwoI GCNNNNNNNGC 4 cut(s) 206, 210, 514, 740
NaeI GCCGGC 1 cut(s) 211
NdeII GATC 4 cut(s) 189, 214, 447, 745
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 608, 622, 731
NlaIV GGNNCC 3 cut(s) 47, 399, 467
NmeAIII GCCGAG 1 cut(s) 347
NspI RCATGY 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PctI GAATGC 1 cut(s) 859
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 4 cut(s) 99, 162, 569, 795
PflFI GACNNNGTC 1 cut(s) 179
PinAI ACCGGT 2 cut(s) 147, 302
PkrI GCNGC 6 cut(s) 289, 292, 564, 613, 733, 871
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 26, 48
PspFI CCCAGC 2 cut(s) 539, 872
PspGI CCWGG 2 cut(s) 26, 48
PspN4I GGNNCC 3 cut(s) 47, 399, 467
PspPI GGNCC 2 cut(s) 30, 271
PstNI CAGNNNCTG 1 cut(s) 872
PsyI GACNNNGTC 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 5 cut(s) 59, 146, 590, 674, 716
RsaNI GTAC 5 cut(s) 58, 145, 589, 673, 715
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 496
SatI GCNGC 6 cut(s) 288, 291, 563, 612, 732, 870
Sau3AI GATC 4 cut(s) 189, 214, 447, 745
Sau96I GGNCC 2 cut(s) 30, 271
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 2 cut(s) 28, 50
SduI GDGCHC 4 cut(s) 264, 430, 496, 789
SfaNI GCATC 1 cut(s) 213
SgrAI CRCCGGYG 2 cut(s) 209, 377
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 650
SsiI CCGC 7 cut(s) 43, 103, 198, 231, 288, 600, 732
SstI GAGCTC 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 26, 48
TaaI ACNGT 2 cut(s) 470, 754
TaiI ACGT 1 cut(s) 369
TaqI TCGA 3 cut(s) 339, 369, 435
TaqII GACCGA 1 cut(s) 98
TasI AATT 1 cut(s) 650
TatI WGTACW 3 cut(s) 57, 588, 714
TauI GCSGC 2 cut(s) 290, 734
TfiI GAWTC 4 cut(s) 99, 162, 569, 795
TscAI CASTG 1 cut(s) 673
TseI GCWGC 4 cut(s) 290, 562, 611, 869
TspDTI ATGAA 2 cut(s) 716, 894
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 1 cut(s) 179
XapI RAATTY 1 cut(s) 650
XceI RCATGY 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.