pycom15g37450

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001819
Physical Location & Seq
Reverse (-)
37407358 .. 37409469
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g37450.7

Sequence Viewer

Length: 759 bp
ATGGCTTTCGCCAAAGCTCAGAAATCAAGGGCTTACTTCAAGAGATTTCAAGTGAAGTACAGGAGAAGGCGAGAGGGAAAGACCGACTACCGTGCCAGGATTAGGCTCATCAACCAAGACAAGAACAAGTACAACACACCCAAGTACCGGTTTGTCGTGAGATTTACCAACAAGGATATTGTTGCTCAGATTATATCTGCCAGTATTGCTGGTGATTTGGTTCTTGCTGCAGCCTACTCCCATGAGCTCCCACACTATGGGCTTGAAGTTGGTCTCACAAACTATGCAGCAGCCTACTGCACTGGCCTACTCTTGGCTCGTCGTGTGTTGAAGAAGCTTGAAATGGATGATGAGTACGAGGGAAATGTTGAGGCCACTGGTGAAGACTACTCTGTAGAGCCAGCTGAGAGCAGGAGGCCATTCCGTGCTCTTCTTGATGTTGGCCTGATCAGGACCACCACAGGAAACCGTGTATTCGGTGCCTTGAAGGGTGCTTTGGATGGGGGTTTGGATATTCCTCACAGTGAAAAGAGGTTTGCTGGTTTCTCCAAGGATAGCAAGCAACTTGACGCTGAGATTCATCGCAAGTACATTTATGGTGGCCATGTTGCTGCATACATGAGGACTTTGGCGGAGGACGAGCCAGAGAAATACCAGAGTCACTTCAGTGAATATATTAAGAAAGGCATTGAAGCGGATGACATCGAGGAGGTGTACAAGAAAGTTCATGCTGCCATCCGTGCTCGATCCTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

253

Amino Acids

28.82

Weight (kDa)

9.43

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 2 cut(s) 632, 695
AclWI GGATC 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 649
AfaI GTAC 6 cut(s) 59, 131, 146, 356, 590, 716
AfiI CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
AgeI ACCGGT 1 cut(s) 147
AgsI TTSAA 7 cut(s) 40, 50, 266, 331, 341, 487, 692
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AleI CACNNNNGTG 1 cut(s) 666
AluBI AGCT 4 cut(s) 17, 247, 337, 404
AluI AGCT 4 cut(s) 17, 247, 337, 404
Alw21I GWGCWC 3 cut(s) 249, 430, 745
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 741
AoxI GGCC 5 cut(s) 304, 372, 416, 442, 601
ApeKI GCWGC 6 cut(s) 227, 230, 287, 290, 611, 731
AsiGI ACCGGT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 224, 392
AvaII GGWCC 1 cut(s) 453
BaeI ACNNNNGTAYC 2 cut(s) 128, 161
BalI TGGCCA 1 cut(s) 603
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 3 cut(s) 249, 430, 745
BbvI GCAGC 6 cut(s) 214, 242, 299, 302, 598, 718
BccI CCATC 2 cut(s) 494, 743
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 2 cut(s) 228, 393
BisI GCNGC 6 cut(s) 228, 231, 288, 291, 612, 732
BlsI GCNGC 6 cut(s) 229, 232, 289, 292, 613, 733
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 549
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 3 cut(s) 201, 307, 382
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 4 cut(s) 352, 505, 703, 735
BseLI CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
BseMII CTCAG 4 cut(s) 32, 200, 396, 564
BseNI ACTGG 3 cut(s) 201, 307, 382
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 6 cut(s) 214, 242, 299, 302, 598, 718
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 5 cut(s) 306, 374, 418, 444, 603
BshNI GGYRCC 1 cut(s) 479
BshTI ACCGGT 1 cut(s) 147
BsiHKAI GWGCWC 3 cut(s) 249, 430, 745
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 102, 147, 257, 313
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 5 cut(s) 306, 374, 418, 444, 603
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 249, 430, 745
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 2 cut(s) 447, 746
BspACI CCGC 2 cut(s) 632, 695
BspANI GGCC 5 cut(s) 306, 374, 418, 444, 603
BspCNI CTCAG 4 cut(s) 31, 199, 397, 565
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 741
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 3 cut(s) 201, 307, 382
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 2 cut(s) 447, 746
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 92, 470, 524
Bst6I CTCTTC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 2 cut(s) 402, 560
BstDEI CTNAG 4 cut(s) 18, 186, 405, 573
BstF5I GGATG 4 cut(s) 352, 505, 703, 735
BstKTI GATC 2 cut(s) 450, 749
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 447, 746
BstMWI GCNNNNNNNGC 2 cut(s) 206, 740
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 228, 393
BstV1I GCAGC 6 cut(s) 214, 242, 299, 302, 598, 718
BstV2I GAAGAC 1 cut(s) 390
BsuRI GGCC 5 cut(s) 306, 374, 418, 444, 603
BtgZI GCGATG 1 cut(s) 566
BtsCI GGATG 4 cut(s) 352, 505, 703, 735
BtsIMutI CAGTG 4 cut(s) 300, 375, 529, 673
Cac8I GCNNGC 2 cut(s) 402, 560
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 453
CseI GACGC 1 cut(s) 578
Csp6I GTAC 6 cut(s) 58, 130, 145, 355, 589, 715
CspAI ACCGGT 1 cut(s) 147
CviAII CATG 4 cut(s) 242, 605, 619, 728
CviQI GTAC 6 cut(s) 58, 130, 145, 355, 589, 715
DdeI CTNAG 4 cut(s) 18, 186, 405, 573
DpnI GATC 2 cut(s) 449, 748
DpnII GATC 2 cut(s) 447, 746
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 647
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 4 cut(s) 245, 608, 622, 731
FatI CATG 4 cut(s) 241, 604, 618, 727
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 6 cut(s) 228, 231, 288, 291, 612, 732
FokI GGATG 4 cut(s) 359, 512, 710, 722
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 6 cut(s) 228, 231, 288, 291, 612, 732
GluI GCNGC 6 cut(s) 228, 231, 288, 291, 612, 732
HaeIII GGCC 5 cut(s) 306, 374, 418, 444, 603
HapII CCGG 1 cut(s) 148
HgaI GACGC 1 cut(s) 578
Hin1II CATG 4 cut(s) 245, 608, 622, 731
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 577, 658
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 224, 392
Hpy166II GTNNAC 1 cut(s) 715
Hpy188I TCNGA 2 cut(s) 21, 189
Hpy188III TCNNGA 4 cut(s) 40, 157, 434, 451
Hpy8I GTNNAC 1 cut(s) 715
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 60, 481
HpyCH4III ACNGT 3 cut(s) 92, 470, 524
HpyCH4V TGCA 4 cut(s) 230, 287, 300, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 740
HpyF3I CTNAG 4 cut(s) 18, 186, 405, 573
Hsp92II CATG 4 cut(s) 245, 608, 622, 731
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 2 cut(s) 447, 746
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 6 cut(s) 214, 242, 299, 302, 598, 718
MaeIII GTNAC 1 cut(s) 659
MalI GATC 2 cut(s) 449, 748
MboI GATC 2 cut(s) 447, 746
MboII GAAGA 3 cut(s) 343, 395, 422
MhlI GDGCHC 3 cut(s) 249, 430, 745
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 1 cut(s) 754
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 1 cut(s) 667
Mox20I TGGCCA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 603
MseI TTAA 2 cut(s) 678, 757
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 206, 740
NdeII GATC 2 cut(s) 447, 746
NlaIII CATG 4 cut(s) 245, 608, 622, 731
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 666
PciSI GCTCTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 577
PflMI CCANNNNNTGG 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 147
PkrI GCNGC 6 cut(s) 229, 232, 289, 292, 613, 733
PleI GAGTC 1 cut(s) 666
PpsI GAGTC 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 453
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 6 cut(s) 59, 131, 146, 356, 590, 716
RsaNI GTAC 6 cut(s) 58, 130, 145, 355, 589, 715
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 678, 757
SatI GCNGC 6 cut(s) 228, 231, 288, 291, 612, 732
Sau3AI GATC 2 cut(s) 447, 746
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 3 cut(s) 249, 430, 745
SetI ASST 6 cut(s) 19, 249, 339, 406, 536, 714
SfcI CTRYAG 2 cut(s) 228, 393
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 666
Sse9I AATT 1 cut(s) 754
SsiI CCGC 2 cut(s) 632, 695
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 3 cut(s) 92, 470, 524
TaqI TCGA 2 cut(s) 705, 745
TaqII GACCGA 1 cut(s) 98
TasI AATT 1 cut(s) 754
TatI WGTACW 4 cut(s) 57, 129, 588, 714
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 2 cut(s) 678, 757
Tru9I TTAA 2 cut(s) 678, 757
TscAI CASTG 4 cut(s) 307, 382, 529, 673
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 6 cut(s) 227, 230, 287, 290, 611, 731
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 569, 716
TspGWI ACGGA 2 cut(s) 413, 728
TspRI CASTG 4 cut(s) 307, 382, 529, 673
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.