Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001819

Physical Location & Seq

Genomic Coordinates Reverse (-)

40397645 .. 40400143

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGGACTTTGATGGAGGATGAACCAGAAAAGTATCAGAGCCATTTCAGTGAATACATTAAGAAAGGAATAGTAGCAGATAACATTGAAGAGATTTACAAGAAAGTGCATGCAGCCATCAGGGCCGACTCTGCAATGAAGAAATCTGAAAAGCCTCAACACTCGGAACACAAGAGCATAATCTCAATTGTATCTCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

67

Amino Acids

7.76

Weight (kDa)

6.91

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18_c	PF14204	29 - 59	3e-08	Ribosomal L18 C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25520 AT3G25520 AT3G25520 AT5G39740 AT5G39740
fragaria_vesca	FvH4_1g00510 FvH4_4g03590
malus_domestica	MD02G1004200.v1.1 MD07G1108900.v1.1 MD15G1147900.v1.1 MD15G1148000.v1.1 MD15G1422600.v1.1
prunus_persica	Prupe.1G039100_v2.0.a1 Prupe.7G266900_v2.0.a1 Prupe.7G266900_v2.0.a1 Prupe.7G266900_v2.0.a1
pyrus_communis	pycom02g00270 pycom15g13230 pycom15g37450
rosa_chinensis	RchiOBHm_Chr2g0085141 RchiOBHm_Chr4g0392961 RchiOBHm_Chr5g0042531
rosa_laevigata	RLG00000009778 RLG00000015659
rosa_multiflora	Rmu_co8484969.1_g000001 Rmu_sc0001196.1_g000017 Rmu_sc0002784.1_g000056 Rmu_sc0008647.1_g000012 Rmu_ssc0000204.1_g000006
rosa_roxburghii	Rroxscaffold_2G00114350 Rroxscaffold_2G00155620 Rroxscaffold_3G00223930 Rroxscaffold_5G00338070
rosa_rugosa	Rorug01G0457800 Rorug03G0341700
rosa_samantha	Rh2AG006200 Rh2BG006900 Rh2CG007700 Rh2DG007700 Rh4AG045100 Rh4AG130400 Rh4BG041000 Rh4CG048700 Rh4DG042700 Rh5BG291600
rosa_wichuraiana	Rw2G000570 Rw4G003540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	89
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	7, 125
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstNSI	RCATGY	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	42, 116, 125, 154
CviKI_1	RGCY	4 cut(s)	42, 116, 125, 154
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	111, 179
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	39, 148, 166
HpyCH4V	TGCA	3 cut(s)	109, 113, 134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
Hsp92II	CATG	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	39, 106
Lsp1109I	GCAGC	1 cut(s)	125
MboII	GAAGA	2 cut(s)	101, 151
MfeI	CAATTG	2 cut(s)	186, 199
MluCI	AATT	2 cut(s)	186, 199
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	10, 165
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	48
MunI	CAATTG	2 cut(s)	186, 199
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NlaIII	CATG	1 cut(s)	113
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	122
SgeI	CNNG	6 cut(s)	38, 112, 122, 133, 175, 184
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	186, 199
TasI	AATT	2 cut(s)	186, 199
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	36, 152
TspRI	CASTG	1 cut(s)	55
XceI	RCATGY	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.