Rh4AG130400

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001819
Physical Location & Seq
Reverse (-)
28265990 .. 28269478
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG130400.1

Sequence Viewer

Length: 561 bp
ATGTTCAACAGTGCAAAAATCGCATTACTCAATCTCTGTGATGTCAATCCCTTCAAATGTCAGAATCAAAGTGTGTGTGTGTGTGTGCAGACTGTGGAGGGAGAAGAAATTGAAAACCTGCACTGCATATTGGTTGATGAACAGGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGACTTTGATGGAGGATGAACCAGAAAAGTATCAGAGCCATTTCAGTGAATACATTAAGAAAGGAATAGTAGCAGATAACATTGAAGAGATTTACAAGAAAGTGCATGCAGCCATCAGGGCCGACCCTGCAATGAAGAAATCTGAAAAGCCTCAACACTCGGAACACAAGAGCATAATCTCAATTGCATCTCAATTGATTTACAAGATAAAAAAAAAAAACAACATAAATAGAATTTTCTATATTAAAATAATATTCAAATTTGACATAGCCTTTGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

186

Amino Acids

21.22

Weight (kDa)

7.66

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18_c PF14204 120 - 150 1.1e-08 Ribosomal L18 C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 2 cut(s) 510, 536
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 1 cut(s) 234
AgsI TTSAA 5 cut(s) 7, 55, 113, 362, 535
AluBI AGCT 3 cut(s) 149, 220, 557
AluI AGCT 3 cut(s) 149, 220, 557
AoxI GGCC 2 cut(s) 256, 396
ApeKI GCWGC 3 cut(s) 217, 266, 386
ApoI RAATTY 2 cut(s) 510, 536
ArsI GACNNNNNNTTYG 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 396
BalI TGGCCA 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 229, 253, 398
BccI CCATC 2 cut(s) 280, 398
BfuAI ACCTGC 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 3 cut(s) 218, 267, 387
BlsI GCNGC 3 cut(s) 219, 268, 388
BmgT120I GGNCC 1 cut(s) 396
BmsI GCATC 2 cut(s) 214, 473
Bpu10I CCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 414
Bse8I GATNNNNATC 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 45
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 219
BseXI GCAGC 3 cut(s) 229, 253, 398
BsgI GTGCAG 2 cut(s) 104, 107
BshFI GGCC 2 cut(s) 258, 398
BsnI GGCC 2 cut(s) 258, 398
BspANI GGCC 2 cut(s) 258, 398
BspCNI CTCAG 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 4 cut(s) 11, 94, 158, 179
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 228, 558
BstF5I GGATG 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 20, 395, 404, 554
BstNSI RCATGY 1 cut(s) 386
BstV1I GCAGC 3 cut(s) 229, 253, 398
BsuRI GGCC 2 cut(s) 258, 398
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 4 cut(s) 16, 121, 184, 328
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 233
CviAII CATG 3 cut(s) 260, 274, 383
CviJI RGCY 9 cut(s) 149, 220, 258, 315, 389, 398, 427, 548, 557
CviKI_1 RGCY 9 cut(s) 149, 220, 258, 315, 389, 398, 427, 548, 557
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 2 cut(s) 228, 558
DraIII CACNNNGTG 1 cut(s) 179
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 263, 277, 386
FatI CATG 3 cut(s) 259, 273, 382
Fnu4HI GCNGC 3 cut(s) 218, 267, 387
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 218, 267, 387
GluI GCNGC 3 cut(s) 218, 267, 387
HaeIII GGCC 2 cut(s) 258, 398
Hin1II CATG 3 cut(s) 263, 277, 386
HinfI GANTC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 63, 312, 421, 439
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 4 cut(s) 11, 94, 158, 179
HpyCH4V TGCA 9 cut(s) 14, 88, 121, 126, 269, 382, 386, 407, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 395, 404, 554
HpyF3I CTNAG 2 cut(s) 228, 558
Hsp92II CATG 3 cut(s) 263, 277, 386
LmnI GCTCC 2 cut(s) 146, 554
LpnPI CCDG 6 cut(s) 128, 131, 180, 312, 379, 417
Lsp1109I GCAGC 3 cut(s) 229, 253, 398
LweI GCATC 2 cut(s) 214, 473
MboII GAAGA 3 cut(s) 116, 374, 424
MfeI CAATTG 2 cut(s) 459, 470
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 5 cut(s) 108, 459, 470, 510, 536
MluNI TGGCCA 1 cut(s) 258
MnlI CCTC 6 cut(s) 91, 180, 223, 270, 283, 438
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 333, 522
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 258
MunI CAATTG 2 cut(s) 459, 470
MwoI GCNNNNNNNGC 4 cut(s) 20, 395, 404, 554
NlaIII CATG 3 cut(s) 263, 277, 386
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 219, 268, 388
PspPI GGNCC 1 cut(s) 396
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 333, 522
SatI GCNGC 3 cut(s) 218, 267, 387
Sau96I GGNCC 1 cut(s) 396
SetI ASST 6 cut(s) 120, 151, 191, 222, 234, 559
SfaNI GCATC 2 cut(s) 214, 473
SmiMI CAYNNNNRTG 1 cut(s) 321
SphI GCATGC 1 cut(s) 386
Sse9I AATT 5 cut(s) 108, 459, 470, 510, 536
SspI AATATT 1 cut(s) 531
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 11, 94, 158, 179
TasI AATT 5 cut(s) 108, 459, 470, 510, 536
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 333, 522
Tru9I TTAA 2 cut(s) 333, 522
TscAI CASTG 4 cut(s) 16, 128, 184, 328
TseI GCWGC 3 cut(s) 217, 266, 386
TspDTI ATGAA 3 cut(s) 153, 309, 425
TspRI CASTG 4 cut(s) 16, 128, 184, 328
XapI RAATTY 2 cut(s) 510, 536
XceI RCATGY 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.