Rmu_sc0001196.1_g000017

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001196.1
OG0001819
Physical Location & Seq
Reverse (-)
91762 .. 92738
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001196.1_g000017.1.cds

Sequence Viewer

Length: 450 bp
atgttaactaataatgttttgcttagtcaagagaaattgggagctttggacggtggtttggatattccacacagtgataagaggtttgctggtttctccaaggacaacaagcagcttgatgctgaggtccatcgtaagtatatctatggtggccatgttgctgcatacatgaggactttgatggaggatgaaccagaaaagtatcagagccatttcagtgaatacattaagaaaggaataggagcagataacattgaagagatttacaagaaagtgcatgcagccatcagggccgaccctacaataaaaaaatctgaaaagcctcaacgcttggaacacaagaggtttaacctcaagaagcttacctacgaggaaaggaagaacaaattgatcgagagactgaatgccttcaactcagccgcccatgctgatgacgacgatgatgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

149

Amino Acids

17.2

Weight (kDa)

6.66

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 257, 412
AluBI AGCT 3 cut(s) 44, 115, 361
AluI AGCT 3 cut(s) 44, 115, 361
Alw26I GTCTC 1 cut(s) 391
AoxI GGCC 2 cut(s) 151, 291
ApeKI GCWGC 3 cut(s) 112, 161, 281
Asp700I GAANNNNTTC 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 127, 291
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 124, 148, 293
BccI CCATC 3 cut(s) 138, 175, 293
BcoDI GTCTC 1 cut(s) 391
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 4 cut(s) 113, 162, 282, 420
BlsI GCNGC 4 cut(s) 114, 163, 283, 421
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 291
BmsI GCATC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 114, 429
BseXI GCAGC 3 cut(s) 124, 148, 293
BshFI GGCC 2 cut(s) 153, 293
BsmAI GTCTC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 2 cut(s) 153, 293
Bsp143I GATC 1 cut(s) 390
BspACI CCGC 1 cut(s) 420
BspANI GGCC 2 cut(s) 153, 293
BspCNI CTCAG 2 cut(s) 115, 428
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 53, 74
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 23, 123, 415
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 290, 425
BstNSI RCATGY 1 cut(s) 281
BstV1I GCAGC 3 cut(s) 124, 148, 293
BsuRI GGCC 2 cut(s) 153, 293
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 79, 223
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 127, 291
CviAII CATG 4 cut(s) 155, 169, 278, 425
CviJI RGCY 9 cut(s) 44, 115, 153, 210, 284, 293, 322, 361, 419
CviKI_1 RGCY 9 cut(s) 44, 115, 153, 210, 284, 293, 322, 361, 419
DdeI CTNAG 3 cut(s) 23, 123, 415
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
DraIII CACNNNGTG 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 158, 172, 281, 428
FaiI YATR 7 cut(s) 141, 147, 156, 166, 170, 279, 426
FatI CATG 4 cut(s) 154, 168, 277, 424
Fnu4HI GCNGC 4 cut(s) 113, 162, 282, 420
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 4 cut(s) 113, 162, 282, 420
GluI GCNGC 4 cut(s) 113, 162, 282, 420
HaeIII GGCC 2 cut(s) 153, 293
Hin1II CATG 4 cut(s) 158, 172, 281, 428
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 359
HpaI GTTAAC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 207, 316
Hpy188III TCNNGA 3 cut(s) 29, 355, 394
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 2 cut(s) 53, 74
HpyCH4V TGCA 3 cut(s) 164, 277, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 425
HpyF3I CTNAG 3 cut(s) 23, 123, 415
Hsp92II CATG 4 cut(s) 158, 172, 281, 428
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 41, 242
LpnPI CCDG 3 cut(s) 75, 207, 274
Lsp1109I GCAGC 3 cut(s) 124, 148, 293
LweI GCATC 1 cut(s) 109
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 2 cut(s) 269, 391
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 2 cut(s) 35, 386
MluNI TGGCCA 1 cut(s) 153
MnlI CCTC 8 cut(s) 75, 118, 165, 178, 333, 336, 362, 364
Mox20I TGGCCA 1 cut(s) 153
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 153
MseI TTAA 3 cut(s) 5, 228, 348
MslI CAYNNNNRTG 2 cut(s) 216, 429
Msp20I TGGCCA 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 290, 425
NdeII GATC 1 cut(s) 390
NlaIII CATG 4 cut(s) 158, 172, 281, 428
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 407
PkrI GCNGC 4 cut(s) 114, 163, 283, 421
PspPI GGNCC 2 cut(s) 127, 291
RseI CAYNNNNRTG 2 cut(s) 216, 429
SaqAI TTAA 3 cut(s) 5, 228, 348
SatI GCNGC 4 cut(s) 113, 162, 282, 420
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 2 cut(s) 127, 291
SetI ASST 8 cut(s) 46, 86, 117, 129, 347, 354, 363, 368
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 2 cut(s) 216, 429
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 281
Sse9I AATT 2 cut(s) 35, 386
SsiI CCGC 1 cut(s) 420
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 53, 74
TaqI TCGA 1 cut(s) 393
TasI AATT 2 cut(s) 35, 386
TauI GCSGC 1 cut(s) 422
Tru1I TTAA 3 cut(s) 5, 228, 348
Tru9I TTAA 3 cut(s) 5, 228, 348
TscAI CASTG 2 cut(s) 79, 223
TseI GCWGC 3 cut(s) 112, 161, 281
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 79, 223
VpaK11BI GGWCC 1 cut(s) 127
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.