Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

27524472 .. 27524648

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1197000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGTTCAAGAAGCTGAGAAGTACAAGTCAGAAGATGAGGAGCACAAGAAGAAAATGGAGGCCAAGAATGCTCTGGAAAATTATGCCTACGACTTGAGCAACACGATCAAGGATGATAAGATTGCCTCCAAGCTGGACGCCGCTGACAAGAAGAAGATTGAGGATGCGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

59

Amino Acids

6.69

Weight (kDa)

4.95

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 57	6.6e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	8
AluBI	AGCT	2 cut(s)	14, 133
AluI	AGCT	2 cut(s)	14, 133
Alw21I	GWGCWC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	175
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	138
BseGI	GGATG	2 cut(s)	118, 169
BseMII	CTCAG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	7
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	118, 169
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	118, 169
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	22
CviJI	RGCY	3 cut(s)	14, 62, 133
CviKI_1	RGCY	3 cut(s)	14, 62, 133
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
FaiI	YATR	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	175
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	8, 74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	59, 119
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	175
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	44, 61, 163, 166
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	4 cut(s)	31, 52, 136, 154
MspA1I	CMGCKG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	2 cut(s)	16, 135
SfaNI	GCATC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	175
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XspI	CTAG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.