Rh4DG220400
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003935
Physical Location & Seq
Reverse (-)
42178472 .. 42178783
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG220400.1

Sequence Viewer

Length: 312 bp
ATGGAAATTGCGAGAATGATCAAGGAGGCAGAAAAATACAGGTTTGAAGATGAGGAGAATAAGAAGAAATTGGAGGCTAAGGCTGCATTGATGGACTATACACATGACACGGAGGAAAAAATTCCTAGTCTCAGAAAGCTCAACCGAGCGGACAAGAAGAAATATGAGGGTGAGGTTGCAAGGACCTGCCGGTGGCTTGACGAGAACGAAAACCGACTTGCTGAACGCAAAGAATATGAGGACCAGATGAAAAAGCTTGAGAACGTTTGCAATCGCATAATTGGCAAGATGCACCAGGATCGGTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

103

Amino Acids

12.45

Weight (kDa)

7.68

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 98 1.1e-07 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
AccBSI CCGCTC 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AclI AACGTT 1 cut(s) 264
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 139, 256
AluI AGCT 2 cut(s) 139, 256
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 120
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 183, 241
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 183, 241
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 2 cut(s) 183, 241
BmgT120I GGNCC 2 cut(s) 183, 241
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 189
BseBI CCWGG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 18, 298
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 189
BssMI GATC 2 cut(s) 18, 298
Bst2UI CCWGG 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 78, 131
BstKTI GATC 2 cut(s) 21, 301
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 18, 298
BstMWI GCNNNNNNNGC 2 cut(s) 83, 282
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 70
BveI ACCTGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 183, 241
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 77, 83, 139, 196, 256
CviKI_1 RGCY 5 cut(s) 77, 83, 139, 196, 256
DdeI CTNAG 2 cut(s) 78, 131
DpnI GATC 2 cut(s) 20, 300
DpnII GATC 2 cut(s) 18, 298
Eco47I GGWCC 2 cut(s) 183, 241
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 99, 105, 165, 237, 278
FatI CATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 84
HapII CCGG 1 cut(s) 190
Hin1II CATG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 254
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 86, 179, 270, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 282
HpyF3I CTNAG 2 cut(s) 78, 131
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 18, 298
LpnPI CCDG 6 cut(s) 25, 199, 203, 257, 281, 308
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 264
MalI GATC 2 cut(s) 20, 300
MbiI CCGCTC 1 cut(s) 149
MboI GATC 2 cut(s) 18, 298
MboII GAAGA 3 cut(s) 59, 76, 169
MluCI AATT 4 cut(s) 6, 68, 120, 279
MnlI CCTC 7 cut(s) 19, 46, 67, 106, 160, 166, 232
MroXI GAANNNNTTC 1 cut(s) 120
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 83, 282
NdeII GATC 2 cut(s) 18, 298
NlaIII CATG 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspPI GGNCC 2 cut(s) 183, 241
PspPPI RGGWCCY 1 cut(s) 183
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 18, 298
Sau96I GGNCC 2 cut(s) 183, 241
ScrFI CCNGG 1 cut(s) 296
SetI ASST 6 cut(s) 44, 141, 177, 188, 258, 267
SfaNI GCATC 1 cut(s) 279
SinI GGWCC 2 cut(s) 183, 241
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 6, 68, 120, 279
SsiI CCGC 1 cut(s) 149
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 267
TasI AATT 4 cut(s) 6, 68, 120, 279
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 183, 241
XapI RAATTY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.