Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

18283662 .. 18284337

Gene Structure 676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTTATTGTCATCCCAAGAAACACTACCATTCCGAGTAAAAAAGTAAAGATCGGCACAACCGTCTGTAATCATCAGAAAGAAGTATTGACTAAGGTATATGAGGGTGAAAGAACAATAGCTAAAGAAAACAAATTGTTGGGTCAATTTGTGCTCTCAGGCCTCCAACTAGCTGCAAGGGGTGTGCCTGAAATCCTTGTTTGCTTTGAGACTGATGCCAACGGAATTTTGATTGTCTCTGCCAGGGACAAAAAAACAAGGCAGCAGAAAATGATGACAATCACAAGAGACAATTACAGGTTATCCAAGTGGGAAATTGAGAAGATGGTCAAGGAGGCAGAGAAGTACAAGTTAGAGGATGAGGAATTCAAAAATAAAGTGGAGGCTAAAATGGCATTGGAAAACTATGCAAATGACATGAGGAACACAGTTTCTCATCTCCCAAAGCTCGAGCTCGTGGACAAGAAGAAAATTGGGAATGCGATTAAACAGGCAAAACGGTGGCTCAATGAAAACCAGCTTGCTAAATTTGACGAATATAGGGATCAGACGAAACGGCTAGAGAACATTTGCAATCCCATTATTGCCAAAGCCAGGGGTGATGGGAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

204

Amino Acids

23.41

Weight (kDa)

9.5

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	4 - 198	2.2e-42	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	3 cut(s)	225, 365, 527
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	594
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	242, 593
AluBI	AGCT	5 cut(s)	122, 173, 448, 454, 520
AluI	AGCT	5 cut(s)	122, 173, 448, 454, 520
Alw21I	GWGCWC	2 cut(s)	156, 456
Alw26I	GTCTC	3 cut(s)	203, 241, 282
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	173, 262
ApoI	RAATTY	3 cut(s)	225, 365, 527
AsuHPI	GGTGA	2 cut(s)	119, 611
AvaI	CYCGRG	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	455
Bbv12I	GWGCWC	2 cut(s)	156, 456
BbvI	GCAGC	2 cut(s)	160, 274
BccI	CCATC	2 cut(s)	319, 596
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	2 cut(s)	244, 595
BcoDI	GTCTC	3 cut(s)	203, 241, 282
BfaI	CTAG	2 cut(s)	170, 560
BisI	GCNGC	2 cut(s)	174, 263
BlsI	GCNGC	2 cut(s)	175, 264
Bme1390I	CCNGG	2 cut(s)	244, 595
BmeT110I	CYCGRG	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	244, 595
BmsI	GCATC	1 cut(s)	205
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	243, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	244, 595
BseDI	CCNNGG	2 cut(s)	243, 594
BseGI	GGATG	2 cut(s)	12, 364
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	160, 274
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	156, 456
BsiHKCI	CYCGRG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	3 cut(s)	203, 241, 282
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	156, 456
Bsp143I	GATC	2 cut(s)	51, 544
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	170
BspPI	GGATC	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	243, 594
BssMI	GATC	2 cut(s)	51, 544
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	244, 595
Bst4CI	ACNGT	3 cut(s)	64, 430, 501
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	93, 157
BstF5I	GGATG	2 cut(s)	12, 364
BstKTI	GATC	2 cut(s)	54, 547
BstMAI	GTCTC	3 cut(s)	203, 241, 282
BstMBI	GATC	2 cut(s)	51, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	2 cut(s)	244, 595
BstSCI	CCNGG	2 cut(s)	242, 593
BstV1I	GCAGC	2 cut(s)	160, 274
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	12, 364
Cac8I	GCNNGC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	93, 157
DpnI	GATC	2 cut(s)	53, 546
DpnII	GATC	2 cut(s)	51, 544
Ecl136II	GAGCTC	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	242, 593
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	1 cut(s)	421
FaiI	YATR	5 cut(s)	100, 102, 408, 419, 540
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	174, 263
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	174, 263
FspBI	CTAG	2 cut(s)	170, 560
GluI	GCNGC	2 cut(s)	174, 263
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	421
HphI	GGTGA	2 cut(s)	119, 611
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	3 cut(s)	36, 78, 549
Hpy8I	GTNNAC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	64, 430, 501
HpyCH4V	TGCA	3 cut(s)	176, 410, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	93, 157
Hsp92II	CATG	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	51, 544
LpnPI	CCDG	9 cut(s)	144, 201, 229, 256, 283, 476, 530, 580, 607
Lsp1109I	GCAGC	2 cut(s)	160, 274
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	170, 560
MalI	GATC	2 cut(s)	53, 546
MboI	GATC	2 cut(s)	51, 544
MboII	GAAGA	2 cut(s)	334, 478
MhlI	GDGCHC	2 cut(s)	156, 456
MluCI	AATT	8 cut(s)	134, 146, 225, 292, 315, 365, 471, 527
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	97, 173, 328, 349, 355, 376, 414
MseI	TTAA	1 cut(s)	486
MspR9I	CCNGG	2 cut(s)	244, 595
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	2 cut(s)	244, 595
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	51, 544
NlaIII	CATG	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	175, 264
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	242, 593
PspGI	CCWGG	2 cut(s)	242, 593
PspXI	VCTCGAGB	1 cut(s)	449
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	2 cut(s)	174, 263
Sau3AI	GATC	2 cut(s)	51, 544
ScrFI	CCNGG	2 cut(s)	244, 595
SduI	GDGCHC	2 cut(s)	156, 456
SetI	ASST	7 cut(s)	99, 124, 175, 302, 450, 456, 522
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	8 cut(s)	134, 146, 225, 292, 315, 365, 471, 527
SseBI	AGGCCT	1 cut(s)	162
SspMI	CTAG	2 cut(s)	170, 560
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	242, 593
TaaI	ACNGT	3 cut(s)	64, 430, 501
TaqI	TCGA	1 cut(s)	450
TasI	AATT	8 cut(s)	134, 146, 225, 292, 315, 365, 471, 527
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseI	GCWGC	2 cut(s)	173, 262
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	237
XapI	RAATTY	3 cut(s)	225, 365, 527
XhoI	CTCGAG	1 cut(s)	449
XspI	CTAG	2 cut(s)	170, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.