Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

123281 .. 128298

Gene Structure 5018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000250.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgcttgaaagggaggcaaaagacaagaagaagattgaagatgcaattgagcaagccattcaatggctggatgggaatcagcttgccgaggccgaggaatatgatgacaaggtgaaggagcttgaaggcatttgcaatcccatcattgccaagatgtatcaggggggtgctgctcccgacatgggtatgggtggaggcatggatgaagatgttcctcctgctggtggcagtggtgcaggtcccaagattgaggaagttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

87

Amino Acids

9.31

Weight (kDa)

4.21

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	63
AfiI	CCNNNNNNNGG	4 cut(s)	63, 182, 221, 224
AgsI	TTSAA	4 cut(s)	8, 38, 62, 125
AluBI	AGCT	2 cut(s)	82, 121
AluI	AGCT	2 cut(s)	82, 121
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	65, 149
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	87, 93
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 182, 221, 224
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	87, 93
BseGI	GGATG	2 cut(s)	76, 208
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	4 cut(s)	63, 182, 221, 224
BseMI	GCAATG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	63, 182, 221, 224
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	87, 93
BstC8I	GCNNGC	2 cut(s)	54, 84
BstF5I	GGATG	2 cut(s)	76, 208
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	76, 208
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	54, 84
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	2 cut(s)	181, 199
CviJI	RGCY	5 cut(s)	56, 67, 82, 92, 121
CviKI_1	RGCY	5 cut(s)	56, 67, 82, 92, 121
Eco47I	GGWCC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	239
FaeI	CATG	2 cut(s)	184, 202
FaiI	YATR	4 cut(s)	102, 182, 188, 200
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	2 cut(s)	180, 198
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	83, 215
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	184, 202
HinfI	GANTC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	109, 119
HpyCH4V	TGCA	3 cut(s)	44, 135, 236
Hsp92II	CATG	2 cut(s)	184, 202
LmnI	GCTCC	2 cut(s)	118, 178
LpnPI	CCDG	5 cut(s)	53, 146, 207, 222, 231
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	40, 43, 50, 218
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	1 cut(s)	45
MnlI	CCTC	6 cut(s)	7, 82, 88, 188, 225, 244
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	262
MslI	CAYNNNNRTG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	45
NlaIII	CATG	2 cut(s)	184, 202
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	2 cut(s)	112, 118
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	239
SetI	ASST	4 cut(s)	84, 114, 123, 241
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	45
TasI	AATT	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.