Rh7BG193400
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003935
Physical Location & Seq
Reverse (-)
15765365 .. 15766112
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG193400.1

Sequence Viewer

Length: 615 bp
ATGAAGGTTGTGATCCCAAGAAACAGTACCATTCCCACCAAGAAAGAAAGAGCTTCTAAAACCGTCCAAGATGGACAAACATGTATAAATTATAGAGTGTACGAGGGTGAAAGACCAAGAGCCAGAGACAACAGATTGTTGGGTACATTTAGGCTCGAAGGGATCCAGCCTGCTGCTAGGGGAGTAGCTCAGATCACAGTTTGCATGGAGATCGATTCCGATGGAATTCTGGTTGTGTCTGCTGAGGAAAAATCGACAGGGAATAAGAGCAAGACCACAATTACCAATAACAGCAAAGGCAACCTATCTAAGGAGGAGATCGAGCGGATGATGCAGGAGGCAGAGAAGTACAAGTTAGAGGACGAGGAGAATATGAAGAAAATGGAGGCTAAGTTTGCATTGGTCGACTATATGCATACAATTAAGGACATGGTTTCTTCTGATGAGCTCCAAGATCTCAGTCGAGGGCACAAGAAGAAAATTGAAGTTGCGGTTAGAAAGGTTCGTCATTGGCTTGAAGAGAATCAGGATCAACTTGCTGAATGTGAAGAATATGAGGATAAGAGGGAAAAGCTTGAAAACACTTACAATCGAATAATTGCAAAGAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

204

Amino Acids

23.6

Weight (kDa)

6.86

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 202 6.7e-43 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 405
AciI CCGC 2 cut(s) 325, 491
AclWI GGATC 4 cut(s) 7, 157, 170, 537
AcsI RAATTY 1 cut(s) 225
AfaI GTAC 4 cut(s) 28, 101, 145, 350
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 3 cut(s) 485, 518, 578
AluBI AGCT 4 cut(s) 53, 188, 448, 574
AluI AGCT 4 cut(s) 53, 188, 448, 574
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 4 cut(s) 7, 157, 170, 537
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 471
BamHI GGATCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 450
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 65, 215
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 177
BglII AGATCT 1 cut(s) 454
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 203, 234, 472
BseRI GAGGAG 2 cut(s) 329, 380
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 450, 471
Bsp143I GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
BspACI CCGC 2 cut(s) 325, 491
BspCNI CTCAG 3 cut(s) 202, 235, 471
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 4 cut(s) 7, 157, 170, 537
BsrBI CCGCTC 1 cut(s) 325
BssMI GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
Bst4CI ACNGT 3 cut(s) 26, 64, 199
Bst6I CTCTTC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 5 cut(s) 189, 243, 309, 390, 458
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 7 cut(s) 15, 165, 195, 213, 321, 457, 532
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
BstMWI GCNNNNNNNGC 2 cut(s) 331, 395
BstNSI RCATGY 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 162, 454
BstYI RGATCY 2 cut(s) 162, 454
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 4 cut(s) 27, 100, 144, 349
CviAII CATG 3 cut(s) 81, 205, 430
CviJI RGCY 9 cut(s) 53, 122, 154, 169, 188, 389, 448, 514, 574
CviKI_1 RGCY 9 cut(s) 53, 122, 154, 169, 188, 389, 448, 514, 574
CviQI GTAC 4 cut(s) 27, 100, 144, 349
DdeI CTNAG 5 cut(s) 189, 243, 309, 390, 458
DpnI GATC 7 cut(s) 14, 164, 194, 212, 320, 456, 531
DpnII GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 450
FaeI CATG 3 cut(s) 84, 208, 433
FatI CATG 3 cut(s) 80, 204, 429
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 174
Hin1II CATG 3 cut(s) 84, 208, 433
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 2 cut(s) 215, 523
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 100, 406
Hpy188I TCNGA 3 cut(s) 192, 220, 442
Hpy188III TCNNGA 1 cut(s) 527
Hpy8I GTNNAC 2 cut(s) 100, 406
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 26, 64, 199
HpyCH4V TGCA 5 cut(s) 204, 334, 398, 415, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 395
HpyF3I CTNAG 5 cut(s) 189, 243, 309, 390, 458
Hsp92II CATG 3 cut(s) 84, 208, 433
Kzo9I GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
LmnI GCTCC 1 cut(s) 453
LpnPI CCDG 7 cut(s) 136, 179, 183, 215, 243, 320, 512
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 177
MalI GATC 7 cut(s) 14, 164, 194, 212, 320, 456, 531
MbiI CCGCTC 1 cut(s) 325
MboI GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
MboII GAAGA 5 cut(s) 388, 429, 487, 530, 560
MflI RGATCY 2 cut(s) 162, 454
MhlI GDGCHC 2 cut(s) 450, 471
MluCI AATT 6 cut(s) 88, 225, 279, 420, 480, 597
Mph1103I ATGCAT 1 cut(s) 417
MseI TTAA 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 331, 395
NdeII GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
NlaIII CATG 3 cut(s) 84, 208, 433
NlaIV GGNNCC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 84
PciI ACATGT 1 cut(s) 80
PfeI GAWTC 2 cut(s) 215, 523
PkrI GCNGC 1 cut(s) 175
PscI ACATGT 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 164
PsuI RGATCY 2 cut(s) 162, 454
RsaI GTAC 4 cut(s) 28, 101, 145, 350
RsaNI GTAC 4 cut(s) 27, 100, 144, 349
SacI GAGCTC 1 cut(s) 450
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 7 cut(s) 12, 162, 192, 210, 318, 454, 529
SduI GDGCHC 2 cut(s) 450, 471
SetI ASST 7 cut(s) 9, 55, 190, 306, 450, 504, 576
SfaNI GCATC 1 cut(s) 321
Sse9I AATT 6 cut(s) 88, 225, 279, 420, 480, 597
SsiI CCGC 2 cut(s) 325, 491
SspMI CTAG 1 cut(s) 177
SstI GAGCTC 1 cut(s) 450
TaaI ACNGT 3 cut(s) 26, 64, 199
TaqI TCGA 7 cut(s) 156, 213, 254, 321, 405, 463, 592
TasI AATT 6 cut(s) 88, 225, 279, 420, 480, 597
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 2 cut(s) 215, 523
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 17, 389
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 225
XceI RCATGY 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.