Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000617.1

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Forward (+)

44822 .. 46200

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000617.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgcgaatcatcaatcagccaacagctgccgctattgcctatggtcttgacaaaaaagacaccactgttggcggaaaaaatgttcttattttttatcttggtggtggtactttcgatgtttcccttctcagaattgaaaagcgaatttttgaagtgaaagctactgccggagatacccatcttggtggtgaagattttgacaatagaatggtgaattattttgtacaagagttcaagaggaagcacgaaaaagacattagcaataattccaaatcactgagaagattgagaacatcttgtgaaagagcaaagagaactctttcttccactgctcaaaccacaattgagattgattctttattcgagggaattgactttcactccacaataacgagagcaaaatttgaagagatttacttggatctatttacagaatgtatgaagcctgtggagcagtgtttaagagatgctaaaatggattcgagtattgttcatgatgttgttcttgtaggcggatctactagaattcccaagattattgggtattttgagctcaacggcattggtattgctccaaagggagtgcctgagatccacgtttgctttgagatcgatgccaatggaattttggtcgtctctgccgaggaaaaaaaaacggggagtaagaacaaaattgcacttacaaataatagcaaaagcatgttatctaaggaggaaatcgagaagatggtcaaggaggccgagaagtataggtctgaggaagaggagaacacgaagagattggaggcgaagcttgcattggaagagtatgcatataacatgaaggacactatttttaatctcccaaaactcaaccgagtcgacaagaagaaaattgtggatgcatttgaagatgtcattcgatggcttgatgagaaaaaggatcagcttgctaaatgtgaagaatatgagggtaaaagggaaaagcttgaaaacctctgcattcccatatttgccgagatatatcagggtgctggtactcctaatatggaaaagggaggaacttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

349

Amino Acids

39.52

Weight (kDa)

6.11

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	3 cut(s)	30, 72, 513
AclWI	GGATC	4 cut(s)	429, 523, 586, 930
AcsI	RAATTY	4 cut(s)	144, 401, 525, 624
AfaI	GTAC	3 cut(s)	109, 225, 1018
AgsI	TTSAA	6 cut(s)	137, 152, 235, 407, 890, 971
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	6 cut(s)	26, 161, 553, 793, 928, 967
AluI	AGCT	6 cut(s)	26, 161, 553, 793, 928, 967
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	4 cut(s)	429, 523, 586, 930
AoxI	GGCC	1 cut(s)	738
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	4 cut(s)	144, 401, 525, 624
Asp700I	GAANNNNTTC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	200, 223
BanII	GRGCYC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	3 cut(s)	186, 721, 897
BceAI	ACGGC	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	522
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
BmsI	GCATC	3 cut(s)	457, 604, 871
Bsa29I	ATCGAT	1 cut(s)	612
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bse8I	GATNNNNATC	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	886
BseJI	GATNNNNATC	1 cut(s)	177
BseMII	CTCAG	4 cut(s)	142, 269, 579, 747
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	740
BshVI	ATCGAT	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	981
BsnI	GGCC	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	421, 515, 591, 609, 922
BspACI	CCGC	3 cut(s)	30, 72, 513
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	4 cut(s)	141, 270, 580, 748
BspDI	ATCGAT	1 cut(s)	612
BspHI	TCATGA	2 cut(s)	493, 1046
BspPI	GGATC	4 cut(s)	429, 523, 586, 930
BsrGI	TGTACA	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	5 cut(s)	421, 515, 591, 609, 922
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	4 cut(s)	402, 756, 770, 798
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	795, 930
BstDEI	CTNAG	5 cut(s)	128, 278, 588, 708, 756
BstF5I	GGATG	1 cut(s)	886
BstKTI	GATC	5 cut(s)	424, 518, 594, 612, 925
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	5 cut(s)	421, 515, 591, 609, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 451, 794
BstNSI	RCATGY	1 cut(s)	703
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	3 cut(s)	421, 515, 591
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	3 cut(s)	421, 515, 591
Bsu15I	ATCGAT	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	740
BsuTUI	ATCGAT	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	2 cut(s)	327, 461
BtsIMutI	CAGTG	4 cut(s)	63, 275, 327, 461
Cac8I	GCNNGC	2 cut(s)	795, 930
CciI	TCATGA	2 cut(s)	493, 1046
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	3 cut(s)	108, 224, 1017
CviAII	CATG	4 cut(s)	494, 700, 820, 1047
CviQI	GTAC	3 cut(s)	108, 224, 1017
DdeI	CTNAG	5 cut(s)	128, 278, 588, 708, 756
DpnI	GATC	5 cut(s)	423, 517, 593, 611, 924
DpnII	GATC	5 cut(s)	421, 515, 591, 609, 922
Eam1104I	CTCTTC	4 cut(s)	402, 756, 770, 798
EarI	CTCTTC	4 cut(s)	402, 756, 770, 798
EciI	GGCGGA	2 cut(s)	87, 528
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	525
EcoT22I	ATGCAT	2 cut(s)	814, 886
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	4 cut(s)	497, 703, 823, 1050
FatI	CATG	4 cut(s)	493, 699, 819, 1046
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	1 cut(s)	893
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	27, 30
HaeIII	GGCC	1 cut(s)	740
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	4 cut(s)	497, 703, 823, 1050
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	2 cut(s)	791, 965
HinfI	GANTC	4 cut(s)	6, 353, 479, 858
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	200, 223
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	2 cut(s)	131, 757
Hpy188III	TCNNGA	5 cut(s)	47, 235, 494, 721, 1047
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	2 cut(s)	134, 817
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	5 cut(s)	677, 797, 812, 884, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 451, 794
HpyF3I	CTNAG	5 cut(s)	128, 278, 588, 708, 756
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	497, 703, 823, 1050
Kzo9I	GATC	5 cut(s)	421, 515, 591, 609, 922
LmnI	GCTCC	2 cut(s)	451, 577
LpnPI	CCDG	5 cut(s)	181, 459, 600, 992, 999
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	3 cut(s)	457, 604, 871
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	597
MalI	GATC	5 cut(s)	423, 517, 593, 611, 924
MboI	GATC	5 cut(s)	421, 515, 591, 609, 922
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	3 cut(s)	421, 515, 591
MhlI	GDGCHC	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	867
Mph1103I	ATGCAT	2 cut(s)	814, 886
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	461, 837
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	981
MwoI	GCNNNNNNNGC	3 cut(s)	35, 451, 794
NdeII	GATC	5 cut(s)	421, 515, 591, 609, 922
NlaIII	CATG	4 cut(s)	497, 703, 823, 1050
NmeAIII	GCCGAG	3 cut(s)	667, 766, 1021
NsiI	ATGCAT	2 cut(s)	814, 886
NspI	RCATGY	1 cut(s)	703
PagI	TCATGA	2 cut(s)	493, 1046
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PctI	GAATGC	1 cut(s)	981
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	6, 353, 479
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	555
PsuI	RGATCY	3 cut(s)	421, 515, 591
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	109, 225, 1018
RsaNI	GTAC	3 cut(s)	108, 224, 1017
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	555
SalI	GTCGAC	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	461, 837
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	5 cut(s)	421, 515, 591, 609, 922
SchI	GAGTC	1 cut(s)	867
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	9 cut(s)	28, 163, 555, 600, 755, 795, 930, 969, 978
SfaNI	GCATC	3 cut(s)	457, 604, 871
SmiMI	CAYNNNNRTG	1 cut(s)	183
SsiI	CCGC	3 cut(s)	30, 72, 513
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	7 cut(s)	114, 363, 482, 612, 720, 861, 901
TatI	WGTACW	1 cut(s)	223
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	6, 353, 479
Tru1I	TTAA	2 cut(s)	461, 837
Tru9I	TTAA	2 cut(s)	461, 837
TscAI	CASTG	4 cut(s)	70, 282, 334, 461
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	4 cut(s)	455, 482, 836, 1035
TspRI	CASTG	4 cut(s)	70, 282, 334, 461
XapI	RAATTY	4 cut(s)	144, 401, 525, 624
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	2 cut(s)	814, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.